mRNA_C-linearis_contig106.1009.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig106.1009.1 vs. uniprot
Match: D7FSQ1_ECTSI (Adhesin-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSQ1_ECTSI) HSP 1 Score: 514 bits (1323), Expect = 3.620e-178 Identity = 259/407 (63.64%), Postives = 311/407 (76.41%), Query Frame = 1 Query: 37 MKPISVALLGISVLECLGSTRAAYTIMTIANCAELQAAAEATATSGDILGQLVEAGIVCDDWVNVEVVENKLKLDGDAGTTYTLEKVRFEVKTGAVLRVEVPVEFTGGDEMVSGGVAAAVPGFSQTVNGGALNVEEGATVRFLSSVKMENIGVDTVDLDNMVHGGCIYNKGDIRFEGEFYAEACHAVSSIDEYRVALGGNGAGIWNGIEAQIVFKQAVEMHFCGDWVSPHMHPNFSEPGADGGAIYTDGKVSFFEDALFQNNQGDEGAALWIGVSGVVKFLKRSKARFLYNSGYGDGGAVHNKGVLVMRNTAEFNQGRTSFGRGGCIFYGPSAEAVFLKSVEFFGCTTNMRDGGAIYIDYDNLEFLPQDATYDSNRIVNNFDGIYKCDTIYVAGDGTGDEDAYSCLP 1257
MK ++VA +G + L G AA T M I+NCAELQAAAEATAT G++LGQLVE I CD+W++VE+ ENKLKLDGD G TY +KVRF VK+GA+LRV+VPVEFTG +Q V+GG LNVEEG RFLSSV M+ IGVDTVDL +M HGGC+YN+G +RFEGEFYA C VS+I+EYRVA+ GNGAGIWNG +A++VFK+AVEM FCG+W N +EPG+DGGAIY+DG+VSFFEDALF NN+ DEG ALWIGV+GVVKFLK +KA F NSG G+GG ++N GVLVMRNTA FNQGR++ G GGCI GP++E VF+K+V F GC + G AIYIDYDN+EFLP+DATY N IVNN DG YKC+ +YV GDG+GDEDAY CLP
Sbjct: 1 MKQVAVAAIGAAALSAAGCM-AAPTPMDISNCAELQAAAEATATVGNVLGQLVEEEIFCDEWLSVEIPENKLKLDGDDGVTYKFDKVRFVVKSGAILRVDVPVEFTGDR--------------TQVVHGGVLNVEEGGKARFLSSVSMDGIGVDTVDLADMKHGGCVYNQGYVRFEGEFYANGCETVSTIEEYRVAMAGNGAGIWNGKDAKVVFKEAVEMDFCGNWP---WTSNGAEPGSDGGAIYSDGEVSFFEDALFTNNEADEGGALWIGVTGVVKFLKSAKATFQSNSGPGNGGTINNYGVLVMRNTASFNQGRSTDGSGGCISCGPASEMVFVKNVLFDGCQST-EHGAAIYIDYDNVEFLPEDATYTDNFIVNNSDGFYKCEDVYVVGDGSGDEDAYMCLP 388
BLAST of mRNA_C-linearis_contig106.1009.1 vs. uniprot
Match: D7G627_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G627_ECTSI) HSP 1 Score: 350 bits (898), Expect = 8.160e-114 Identity = 197/381 (51.71%), Postives = 251/381 (65.88%), Query Frame = 1 Query: 115 MTIANCAELQAAAEATATSGDILGQLVEAGIVCDDWVNVEVVENKLKLDGDAGTTYTLEKVRFEVKTGAVLRVEVPVEFTGGDEMVSGGVAAAVPGFSQTVNGGALNVEEGATVRFLSSVKMENIGVDTVDLDNMVHGGCIYNKGDIRFEGEFYAEACHAVSSIDEYRVALGGNGAGIWNGIEAQIVFKQAVEMHFCGDWVSPHMHPNFSEPGADGGAIYTDGKVSFFEDALFQNNQGDEGAALWIGVSGVVKFLKRSKARFLYNSGYGDGGAVHNKGVLVMRNTAEFNQGRTSFGRGGCIFYGPSAEAVFLKSVEFFGCTTNMRDGGAIYIDYDNLEFLPQDATYDSNRIVNNFDGIYKCDTIYVAGDGTGDEDAYSCLP 1257
M IA+CA+LQ+AA A + G+I G LVE+ I CDDW VE+ +NKLKL G A TT+T VRF V GA+LRV+ VEFTG E G A P F + VNGG LNV RFL SVKM ++GV+TV+ D M HGGCIYN+G +RFEG F A+AC S+ ++Y GNG +WNG +A++VFK+AVEM C + + ++ G +GGA+YT+GK+SF+EDA+F +N+GDEG A+WIGV+ VVKFLKRSKA F N+ GG + N+GVLVMRNTA F G S GG I G +E VF+K V+F G + + GGAI Y N+EFLPQDATY+ N ++ N D Y C +YV G G ED Y CLP
Sbjct: 26 MDIASCADLQSAAGAL-SGGNIEGVLVESEITCDDWTTVEISQNKLKLTGQA-TTFT--SVRFVVADGAILRVDTAVEFTGDQERRQGDGLA--PAFLEAVNGGVLNVAPEGYARFLDSVKMYSVGVNTVEDDTMQHGGCIYNEGYVRFEGTFTADACRVGSTAEKYP----GNGGALWNGPDAKVVFKEAVEMTNCYGKKTEDYNGRYT--GLEGGAVYTEGKISFYEDAVFTDNEGDEGGAMWIGVTAVVKFLKRSKATFARNTSENRGGHIMNEGVLVMRNTAVFEDG-VSGSSGGAINAGDVSEMVFIKHVDFIGNSADAH-GGAIATTYPNIEFLPQDATYEGN-VLQNADYDYVCPDVYVNGSEDGGEDGYICLP 391
BLAST of mRNA_C-linearis_contig106.1009.1 vs. uniprot
Match: D8LU56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU56_ECTSI) HSP 1 Score: 314 bits (805), Expect = 5.380e-100 Identity = 182/403 (45.16%), Postives = 241/403 (59.80%), Query Frame = 1 Query: 52 VALLGISVLECLGSTRAAYTI-MTIANCAELQAAAEATATSGDILGQLVEAGIVCDDWVNVEVVENKLKLDGDAGTTYTLEKVRFEVKTGAVLRVEVPVEFTGGDEMVSGGVAAAVPGFSQTVNGGALNVEEGATVRFLSSVKMENIGVDTVDLDNMVHGGCIYNKGDIRFEGEFYAEACHAVSSIDEYRVALGGNGAGIWNGIEAQIVFKQAVEMHFCGDWVSPHMHPNFSEPGADGGAIYTDGKVSFFEDALFQNNQGDEGAALWIGVSGVVKFLKRSKARFLYNSGYGDGGAVHNKGVLVMRNTAEFNQGRTSFGRGGCIFYGPSAEAVFLKSVEFFGCTTNMRDGGAIYIDYDNLEFLPQDATYDSNRIVNNFDGIYKCDTIYVAGDGTGDEDAYSCLP 1257
++ LG+ C T A Y + IA+CA+L AA+A + GDI ++EA I CD+W VEV +NKLK G +G T+T RF V GAVLR +VP+ TG +Q VNGG LNV +G RFL SV M ++GV +V + MVHGGC+YN+G IRFEG F A+ C VSS + + G+G G+WNG +IVFK+AVEM CG+ ++ G DGGAIYTDGKVSF+EDA F +N+ DEG A+ IGV G +KFLK++K F N+ G GG ++N G LV+RNT F+ G G GG I+ G + +F+K V+F T GGAI Y N++ LP+DATY N N D ++C+ +YV GD G ED Y C+P
Sbjct: 5 ISALGLLAHSCF--TNAVYVATIDIASCADLLTAADAL-SGGDIEANIMEADIACDEWTTVEVGQNKLKFVG-SGATFT--SARFVVAAGAVLRADVPLVLTGDQ--------------TQAVNGGLLNVADGGKARFLDSVAMNDVGVLSVSEEAMVHGGCVYNEGLIRFEGTFSADGCKTVSS--DTASVIPGDGGGLWNGPGGKIVFKEAVEMKNCGERTGLR---SWRSQGLDGGAIYTDGKVSFYEDAQFTDNEADEGGAICIGVDGELKFLKKAKVTFTGNNSEGSGGHINNDGTLVLRNTGVFSDGYAG-GSGGAIYAGDFSSMLFVKHVDFLDNTAGAH-GGAIATSYPNIDDLPEDATYQGNSRTNA-DSDFECNNVYVNGDAGGGEDGYICIP 379
BLAST of mRNA_C-linearis_contig106.1009.1 vs. uniprot
Match: A0A6H5L171_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L171_9PHAE) HSP 1 Score: 278 bits (711), Expect = 3.310e-87 Identity = 147/286 (51.40%), Postives = 189/286 (66.08%), Query Frame = 1 Query: 400 GFSQTVNGGALNVEEGATVRFLSSVKMENIGVDTVDLDNMVHGGCIYNKGDIRFEGEFYAEACHAVSSIDEYRVALGGNGAGIWNGIEAQIVFKQAVEMHFCGDWVSPHMHPNFSEPGADGGAIYTDGKVSFFEDALFQNNQGDEGAALWIGVSGVVKFLKRSKARFLYNSGYGDGGAVHNKGVLVMRNTAEFNQGRTSFGRGGCIFYGPSAEAVFLKSVEFFGCTTNMRDGGAIYIDYDNLEFLPQDATYDSNRIVNNFDGIYKCDTIYVAGDGTGDEDAYSCLP 1257
G Q VNGG LNV RFL SVKM ++GV+TV+ D M HGGCIYN+G +RFEG F A+AC S+ ++Y GNG +WNG +A++VFK+AVEM C + + ++ G +GGA+YT+GK+SF+EDA+F +N+GDEG A+WIG +GVVKFLKRSKA F N+ GG + N+GVLVMRNTA F G S GG I G ++E VF+K V F G + + GGAI Y N+EFLPQDATY+ N ++ N D Y C +YV G G ED Y CLP
Sbjct: 9 GRGQAVNGGVLNVAPEGYARFLDSVKMYSVGVNTVEDDTMQHGGCIYNEGYVRFEGTFTADACRVGSTAEKYP----GNGGALWNGPDAKVVFKEAVEMTNCYGKKTEDYNGRYT--GLEGGAVYTEGKISFYEDAVFTDNEGDEGGAMWIGGTGVVKFLKRSKATFARNTSENRGGHIMNEGVLVMRNTAVFEDG-VSGSSGGAINAGDASEMVFIKHVNFIGNSADAH-GGAIATTYPNIEFLPQDATYEGN-VLQNADYDYVCPDVYVNGSEDGGEDGYICLP 285
BLAST of mRNA_C-linearis_contig106.1009.1 vs. uniprot
Match: A0A6H5JCE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCE5_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 6.780e-17 Identity = 85/299 (28.43%), Postives = 133/299 (44.48%), Query Frame = 1 Query: 121 IANCAELQAAAEATATSGDILGQLVEAGIVCDDWVNVEVVENKL------KLDGDAGTTYTLEKVRFEVKTGAVLRVEVPVEFTGGDEMVSGGVAAAVPGFSQTVNGGALNVEEGATVRFLSSVKMENIGV-----DTVDLDNMVH-GGCIYNKGDIRFEGEFYAEACHAVSSIDEYRVALGGNGAGIWNGIEAQIVFKQAVEMHFCGDWVSPHMHPNFSEPGADGGAIYTDGKVSFFEDALFQNNQGDEGAALWIGVSGVVKFLKRSKARFL-YNSGYGDGGAVHNKGVLVMRNTAEF 978
I C +L AA E T T ++ A I C+ + N+ + N L +D +G++ +L VR +V GA L E V F G +E V+GGA+ V EG+TVRFL+ V+M++I + + D + V GGC++ G R +GE C +S E + G G ++ G ++F V + H+ +F G GG IY GKV+ D+ F++ G A++ G F ++A F N+ +G A+ N+G A F
Sbjct: 103 IETCDDLLAAFEQTQTEDVVVEMHPFADIECETFTNMTMTSNSLTVSSSENIDNFSGSS-SLVNVRLDVTNGAKLFWETNVIFEGDEET------------DLMVDGGAVYVGEGSTVRFLNDVQMQDIAIINERDEDSDFSSFVRSGGCVWTAGYFRVDGEATFTGCD-ISGAGE---SPPGPGGAVYVGETGSVLFNGGVTI------TDTHITDDF---GGSGGGIYNLGKVNIKGDSRFEDISASSGVAIYNGEGATFNFRSGARAFFKDLNNRDSEGSALFNRGFFKFSGPALF 375
BLAST of mRNA_C-linearis_contig106.1009.1 vs. uniprot
Match: D7G1Q9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1Q9_ECTSI) HSP 1 Score: 68.6 bits (166), Expect = 5.290e-9 Identity = 74/293 (25.26%), Postives = 115/293 (39.25%), Query Frame = 1 Query: 121 IANCAELQAAAEATATSGDILGQLVEAGIVCDDWVNVEVVENKLKLDGDAGTTYTLEKVRFEVKTGAVLRVEVPVEFTGGDEMVSGGVAAAVPGFSQTVNGGALNVEEGATVRFLSSVKMENIGV-----DTVDLDNMVH-GGCIYNKGDIRFEGEFYAEACHAVSSIDEYRVALGGNGAGIWNGIEAQIVFKQAVEMHFCGDWVSPHMHPNFSEPGADGGAIYTDGKVSFFEDALFQNNQGDEGAALWIGVSGVVKFLKRSKARFL-YNSGYGDGGAVHNKGVLVMRNTAEF 978
I C +L AA E T T ++ A I CD + N+ + N L L E V F G +E V+GGA+ V EG+TVRFL+ V+M ++ + + D + V GGC++ G R +GE C + + + + G G ++ G ++F + V + + +F G GG IY GKV+ D+ F+ G A++ G F + A F N+ +G A+ N G A F
Sbjct: 22 IETCDDLLAAFEQTQTEDVVVEMHPFADIECDTFTNMTMTSNTLTLFW-----------------------ETNVIFEGDEEA------------ELMVDGGAVYVGEGSTVRFLNDVQMRDVVIINERDEDSDFASFVRSGGCVWTAGYFRVDGEATFTGCDIIGAGE----SPPGPGGAVYVGETGSVLFNEGVTI------TETSITDDF---GGKGGGIYNLGKVNIKGDSRFEEISASAGVAIYNGEGATFNFRNGAGAFFRDLNNRDSEGSALVNLGFFKFSGPAFF 266
BLAST of mRNA_C-linearis_contig106.1009.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI) HSP 1 Score: 55.8 bits (133), Expect = 9.630e-5 Identity = 85/309 (27.51%), Postives = 113/309 (36.57%), Query Frame = 1 Query: 265 DAGTTYTLEKVRFEVKTGAVLRVEVPVEFTGGDEMVSGGVAAAVPGF------SQTVNGGALNVEEGATVRFL-------SSVKMENIG-VDTVDLDNMVHGGCIY---NKGDIRFEGE--FYAEACHAVSSIDEYRVALGGNGAGIWNGIEAQIVFKQAVEMHFCGDWVSPHMHPNFSEPGADGGAIYTDGKVSFFEDALFQNNQGDEGAALWIGVSGVVKFLKRSKARFLYNSGY--------GDGGAVH-NKGVLVMRNTAEFNQGRTSFGRGGCIFYGPSAEAVFLKSVEFFGCTTNMRDGGAIY 1107
DA T E RF V+ L+ VP G + G P Q NGG L+V EGAT F+ +SV ++ IG V D + G Y G I +G F +A + + G I N I+FK + M + F E GGAIY G++ ++LF N +G ++ G + F A F NS Y DGG V+ N G L N A G G GG I+ + + S F M GGAIY
Sbjct: 44 DASTFACDEYTRFRVRNAMTLKATVPAVEFGNFSLKVLGELTVEPDVMFNGVVDQVKNGGVLSVAEGATATFMGTSEFSDNSVAVKQIGPVSCGDGCTRIGRGLSYIVKKGGAIHNKGTLTFEGDATFERNEVHTEDSVEQGKAGAISNTGSGTILFKSKLTM-------KDNEADGFFE--GIGGAIYNRGEIVVEGESLFSLNTSSDGGGIYQTSIGTMTF--NGAATFSENSAYDLLGGGLMNDGGVVNINAGSLFELNGAS---GSGDGGLGGAIYNTNAGVVTLMGSTTFRENAAFM--GGAIY 336 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig106.1009.1 >prot_C-linearis_contig106.1009.1 ID=prot_C-linearis_contig106.1009.1|Name=mRNA_C-linearis_contig106.1009.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=408bp MKPISVALLGISVLECLGSTRAAYTIMTIANCAELQAAAEATATSGDILGback to top mRNA from alignment at C-linearis_contig106:468949..488574+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig106.1009.1 ID=mRNA_C-linearis_contig106.1009.1|Name=mRNA_C-linearis_contig106.1009.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=19626bp|location=Sequence derived from alignment at C-linearis_contig106:468949..488574+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig106:468949..488574+ >mRNA_C-linearis_contig106.1009.1 ID=mRNA_C-linearis_contig106.1009.1|Name=mRNA_C-linearis_contig106.1009.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2448bp|location=Sequence derived from alignment at C-linearis_contig106:468949..488574+ (Chordaria linearis ClinC8C monoicous)back to top |