Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 3 |
Model size | 448 |
Cds size | 267 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927398.2102141-UTR-C-linearis_contig106:445107..445134 | 1622927398.2102141-UTR-C-linearis_contig106:445107..445134 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig106 445108..445134 - |
1690879677.004998-UTR-C-linearis_contig106:445107..445134 | 1690879677.004998-UTR-C-linearis_contig106:445107..445134 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig106 445108..445134 - |
1622927398.2363877-UTR-C-linearis_contig106:445681..445701 | 1622927398.2363877-UTR-C-linearis_contig106:445681..445701 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig106 445682..445701 - |
1690879677.0352378-UTR-C-linearis_contig106:445681..445701 | 1690879677.0352378-UTR-C-linearis_contig106:445681..445701 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig106 445682..445701 - |
1622927398.2476258-UTR-C-linearis_contig106:446824..446958 | 1622927398.2476258-UTR-C-linearis_contig106:446824..446958 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig106 446825..446958 - |
1690879677.0443695-UTR-C-linearis_contig106:446824..446958 | 1690879677.0443695-UTR-C-linearis_contig106:446824..446958 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig106 446825..446958 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622927398.2187936-CDS-C-linearis_contig106:445134..445157 | 1622927398.2187936-CDS-C-linearis_contig106:445134..445157 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig106 445135..445157 - |
1690879677.0145693-CDS-C-linearis_contig106:445134..445157 | 1690879677.0145693-CDS-C-linearis_contig106:445134..445157 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig106 445135..445157 - |
1622927398.2272336-CDS-C-linearis_contig106:445437..445681 | 1622927398.2272336-CDS-C-linearis_contig106:445437..445681 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig106 445438..445681 - |
1690879677.0258644-CDS-C-linearis_contig106:445437..445681 | 1690879677.0258644-CDS-C-linearis_contig106:445437..445681 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig106 445438..445681 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig106.1007.1 >prot_C-linearis_contig106.1007.1 ID=prot_C-linearis_contig106.1007.1|Name=mRNA_C-linearis_contig106.1007.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=89bp
MPFGSDDVAAFMLLASMMFLCDDEDEFLLEALQMADYNESGDFLEGSTRT GKPKPHDERWWEEKSARHLSSAQFRSFFLGAGSLRSKS* back to topmRNA from alignment at C-linearis_contig106:445108..446958- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig106.1007.1 ID=mRNA_C-linearis_contig106.1007.1|Name=mRNA_C-linearis_contig106.1007.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1851bp|location=Sequence derived from alignment at C-linearis_contig106:445108..446958- (Chordaria linearis ClinC8C monoicous) CAGCCTCCAAAGCGCGACAGGGGCTCTCTCCCATCTCCTCCTACCAACAC
GCGAGTGTCTGTGGTCTTGCCCCAGTGAAGAGGGTCTCAGGACGCATAAT
CGGGAGGAGCCGTCATAAATAATACACGCACCAGGTGGGGCCGAAGAAGA
TTCCACACCCATGTTTACTTTGCGTCCCGCGGTCAAGTCTGAGCCGCTTT
CCAGGGCCGTAGGAGCGCGCGGTTTGAGCGAGACGCCTGCCCCTTTAGGA
AACAGCAGTCGAGACAGGCACACGCCGGTTTTCCAGTAAACTTTACGCTC
TGCACCAAGAATGGGCGGCGCGACAGCCCACATTTCGTGTTCGGAGCCTC
TTCGGAGCACACCACCTGGAGCACACAAAAAGCAAAAAAGCAGCACCTCC
CACAGTCCCGTGAACACGCGCCGCCGCCTAGCGCTGTCGGGGTTCTTCTT
GGCTCCTGTATAGTACCTGGTACAGTAGTATATATCTAAAGTATATGCAC
TCTTTCTATAGATGGCACCTGAAGGGTTATCTTGAAGCGGAGCTGCAGAT
GTAGGGTTAAATGCACCTGCCAGGTCTGCTGGTCTAGATTTCAGTATACT
GCTGGAGAGCAGCTCGTCTAGACTCCTACTTTACTAGTGTAATAGTCTCT
ACTCTGTCTCTGCGGTGTAGGCCCCCGGGACTATGGGTGTACTGTTGTAG
TGTTTTATGTACACGGACTAGTTTTACCAGACGACCGGCTGGGCGTGAGC
ATCGGCTGCATCTGGGTTACTCTCTCTTGCCTCGCACATAATTGCTGCTG
CGGCACGTACTTGCTGCTGCGCACGTAGCTGCTGCTGCGCGCGGTGCAGG
TACGGCGGGCCGGTACTGTTGTAGACTGTAAATATCTGCCACGCCGACGA
TGTGGAAACAATTCCTAGCCCTATTCGTGTGCACTTTTTCCGAACTCCAC
GCAAGTACCATGATAGGGTTGGGAGTGCCTTCTGGCGGAACCTCCGAGGG
CCCATCAATATAGCTGCCCTCAATTTTACGTGCGTGCTAATCCACTTTCG
TAAATCTCGTTGTTGTACATAGCGTGCGAAAGCTCAAGCATTGCGTGATC
AATCGACGAACGGTACAAATTAAAACTCCTGTTGTGTCACGAGAAGGTGC
GTGTGCCACAAAGGACTGCATGGGTGTAAAGCCCGTGCGAAATCCTGACC
TTGACGCTTATCGCTCCTTCTTGTCGGCCCGTTCCCCGCGTCTCTGTCTT
CCCACAGAGAGCATCTGCTGCTCAGCCATGCCTTTCGGATCGGATGACGT
CGCGGCCTTTATGTTGCTTGCGAGCATGATGTTCCTATGCGACGATGAAG
ACGAGTTCCTACTGGAAGCTCTGCAGATGGCCGACTACAACGAATCGGGC
GACTTCCTGGAGGGCTCGACGAGAACGGGGAAGCCCAAACCGCATGACGA
GCGGTGGTGGGAGGAGAAATCGGCGAGACACCTGAGCAGCGCTCAGTTCA
GGTCCTTTTTTTTAGGTGCAGGTGCGAACAGTTTATTATTTTACTTTCAG
TGCAAAGGCGGGTTGCCGTATCGCCTAATACATGAGGTTGTCGCAGCACC
GTACCCCGTCCCTCCTCCCGAGTGCCACCTATGCGCTAGATGTGGTACCG
TTGAGCATGCCAATACTTGCAGATCAAACAAGGAAATGATGACCGCCTCC
AGGCACCCCCACAGCCTCGTGGCCTTACCTTAAAATCAGGCAGGCATGCT
TACATCGTTCTCGCTCTGCCTGTCAAACATGTCCACCTCCCAACTTGACA
GGAAGCCTACGTTCAAAGAGCTAGTGAAGAGGCTGTATGGCACGACGGAC
T back to topCoding sequence (CDS) from alignment at C-linearis_contig106:445108..446958- >mRNA_C-linearis_contig106.1007.1 ID=mRNA_C-linearis_contig106.1007.1|Name=mRNA_C-linearis_contig106.1007.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at C-linearis_contig106:445108..446958- (Chordaria linearis ClinC8C monoicous) ATGCCTTTCGGATCGGATGACGTCGCGGCCTTTATGTTGCTTGCGAGCAT GATGTTCCTATGCGACGATGAAGACGAGTTCCTACTGGAAGCTCTGCAGA TGGCCGACTACAACGAATCGGGCGACTTCCTGGAGGGCTCGACGAGAACG GGGAAGCCCAAACCGCATGACGAGCGGTGGTGGGAGGAGAAATCGGCGAG ACACCTGAGCAGCGCTCAGTTCAGGTCCTTTTTTTTAGGTGCAGATGCCT TTCGGATCGGATGACGTCGCGGCCTTTATGTTGCTTGCGAGCATGATGTT CCTATGCGACGATGAAGACGAGTTCCTACTGGAAGCTCTGCAGATGGCCG ACTACAACGAATCGGGCGACTTCCTGGAGGGCTCGACGAGAACGGGGAAG CCCAAACCGCATGACGAGCGGTGGTGGGAGGAGAAATCGGCGAGACACCT GAGCAGCGCTCAGTTCAGGTCCTTTTTTTTAGGTGCAGGAAGCCTACGTT CAAAGAGCTAGGAAGCCTACGTTCAAAGAGCTAG back to top
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