mRNA_C-linearis_contig106.1006.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: A0A6H5JSG7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG7_9PHAE) HSP 1 Score: 402 bits (1033), Expect = 3.540e-136 Identity = 190/267 (71.16%), Postives = 219/267 (82.02%), Query Frame = 3 Query: 447 CRKGERGPMFDPCERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGACILGDSAFAESAWMRTPIGTPQTRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFIYLREGESPAEQGLD 1247 CRKG RGP FDPCERVAVFM+RLGGD T RQTA+QF LS+GTVSQVTLEVAR V++ LR + V WPSP EQ+ MS WELEK LR VIG IDGSHI+ LAP D+LQ ++Y+YK FYSISLLAIVDN+G+FRWF SGAPG+C DSG+L +T FY V+ + +P R+L +GACILGDSAFAES WMRTPIG P R ERFFNYKHSS RFRVEHAFGRLKKKFRAL GLDC L HC T++NACV+LHNFI++ EGESPA+ G+D Sbjct: 2 CRKGRRGPPFDPCERVAVFMWRLGGDSTVRQTALQFGLSDGTVSQVTLEVARRVDKYLRDECVWWPSPEEQRDMSAAWELEKHLRGVIGAIDGSHIKILAPPDSLQTSYYNYKHFYSISLLAIVDNEGMFRWFCSGAPGACADSGVLTDTAFYEMVQEDQAQPVSSRQLFANGACILGDSAFAESPWMRTPIGKPDNRAERFFNYKHSSMRFRVEHAFGRLKKKFRALLNGLDCHLDHCPTIVNACVILHNFIFMCEGESPADHGVD 268
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: A0A6H5JA50_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA50_9PHAE) HSP 1 Score: 287 bits (735), Expect = 3.030e-92 Identity = 136/234 (58.12%), Postives = 165/234 (70.51%), Query Frame = 3 Query: 402 TFKELVKRLYGTTDFCRKGERGPMFDPCERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGACILGDSAFAESAWMRTPIGTPQTRPERFFNYKHSSQRFRVEHAFG 1103 TF+ LV L+GTT R GP DPCERVAVF++R+G R TA FN++EG V T+ VAR + +RL +YVRWPSP EQ ++S WE EK LR V+GGIDGSHI+ AP ++ QLA+Y+YK+FYSI LLAIVDN+GLFRW SG GSCGDSG+LQ T FY + E KP RR+ +GACILGDSAFAE WMRTP P +R +R+FN+ HSS R RVEHA G Sbjct: 14 TFRRLVHALFGTTYVFRVNNTGPYIDPCERVAVFLFRVGHGSGVRATASHFNMAEGAVVNWTMSVARRIRKRLLCEYVRWPSPEEQSEISTAWEKEKSLRKVVGGIDGSHIKIPAPTEHQQLAYYNYKKFYSIILLAIVDNRGLFRWTCSGCAGSCGDSGVLQHTKFYKAAQREQSKPVDERRIFANGACILGDSAFAEGPWMRTPYTMPSSREQRYFNFMHSSMRMRVEHALG 247
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: UPI0014255786 (protein ALP1-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014255786) HSP 1 Score: 129 bits (324), Expect = 1.300e-29 Identity = 91/273 (33.33%), Postives = 134/273 (49.08%), Query Frame = 3 Query: 402 TFKELVKRLYGTTDFCRKGER--GPMFDPCERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARV-ESETPKPPKRRRLMYDGA--CILGDSAFAESAWMRTPIGTPQTRP--ERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHN 1199 TFK +V L F K E GP F RVA+ +YRL +TA QF ++ T + EV +E L ++ +P+ E KK ++++++ G V+G IDG+HI +AP+D Q +Y+ K +YSI L +VD G+F G PGS D+ + ++F + + + KP L ILGD A+ + P +P + FNYK S R VEHAFGRLK ++R L K + ++ AC LHN Sbjct: 120 TFKYVVDEL---RPFIEKSENNNGPTFSTEWRVAMTLYRLSSGIPFNRTANQFGSAKSTACTIYHEVCEAIEAVLMPKFITFPTGQELKKNIEKFKMKGGFPQVVGAIDGTHIAIIAPRDQPQ-DYYNRKEYYSIVLQGVVDANGMFIDTFCGMPGSVNDARVFHISNFGEAIKDGKIFKPYIEETLNGTNIPPLILGDGAYPLLTNLMRPFPNRPNKPREQTRFNYKLSQCRVIVEHAFGRLKGRWRILLKRNEHETHKLRPVVQACCTLHN 388
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: UPI0010FB0173 (protein ALP1-like n=2 Tax=Nylanderia fulva TaxID=613905 RepID=UPI0010FB0173) HSP 1 Score: 123 bits (308), Expect = 4.280e-28 Identity = 70/240 (29.17%), Postives = 125/240 (52.08%), Query Frame = 3 Query: 486 ERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGACILGDSAFAESAWMRTPIGTPQTRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFI 1205 +++AV +Y+L R + + TV + +V + + + + +Y+ P E K +++ +E + G+ +IG IDG+HIE + P + + F + K + S ++LA+VD+ G FR V+ PGSC D+ +L+++ Y + PK + M I+GD A+ W+ + + FN +S R VE AFGRLK ++R L + ++C ++ AC +LHNF+ Sbjct: 41 KQIAVALYKLASTAEYRVIGNTMGIHKSTVKKCVYKVVKAINQIMLQNYIYMPHEKEAKFIAQNFEEKCGIPQIIGSIDGTHIEIIPPSEGCK-DFVNRKGWPSYNVLAVVDHNGRFRNIVAKHPGSCHDAAVLKDSTLYKNSNTIIPKETQNINGMEIPFIIVGDPAYPLLPWLLKGYSGSLSAEQESFNVYLNSARVSVEMAFGRLKARWRILHQ-INCDYIFAPEIIVACCILHNFV 278
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: A0A1Y1KPL4_PHOPY (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KPL4_PHOPY) HSP 1 Score: 118 bits (296), Expect = 1.000e-27 Identity = 67/197 (34.01%), Postives = 110/197 (55.84%), Query Frame = 3 Query: 627 DYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGACILGDSAFAESAWMRTPI--GTPQTRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFIYL 1211 ++++WP+ E + K++ K +RNVIG IDGSHIE PK++ Q+ + + K ++SI L +V+ +F G PGS D+ +L+++ Y+ + +E+P +Y+ +LGDSA+ W+ TPI T + +NY+HSS R +E+AFG LK +FR LRK + + A ++HN L Sbjct: 12 NFIQWPNEVECVDIEKKFAKVKNIRNVIGAIDGSHIEICRPKEH-QVDYCNRKGYHSIILQGVVNRDKVFLDVYCGEPGSMHDARVLRKSPLYSAIGTESP--------IYNKYLLLGDSAYPTLPWLMTPIKDNGHLTEQQHIYNYEHSSTRICIENAFGLLKGRFRRLRKYDNINIQFIVKCTIAACIIHNICIL 199
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: UPI00193D326F (protein ALP1-like isoform X1 n=1 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193D326F) HSP 1 Score: 123 bits (308), Expect = 1.110e-27 Identity = 73/240 (30.42%), Postives = 125/240 (52.08%), Query Frame = 3 Query: 486 ERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGACILGDSAFAESAWMRTPIGTPQTRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFI 1205 ++VAV +Y+L R + + +V + V + + + + +Y+ P+ +E ++ +E + + +IG IDG+HIE + PK+ + F + K + S ++LAIVD+ G FR V PGSC D+ +L+E+ Y ++ PK + M I+GD A+ W+ + E FN +S R +E AFGRLK ++R L K ++C + ++ AC VLHNF+ Sbjct: 142 KQVAVALYKLASTAEYRVIGNAMGIHKSSVKKCLYRVIKAINKVMLQNYINMPNENEANLIASNFENKCFIPQIIGSIDGTHIEIIPPKEGYR-DFINRKGWPSYNVLAIVDHNGRFRNIVIKHPGSCHDAAVLKESMLYKDADTLIPKKTRNINGMEIPFIIVGDPAYPLLPWLIKGFSGSLSSEEESFNVYLNSARVSIEMAFGRLKARWRILHK-INCDYSFAPEIIAACCVLHNFL 379
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: UPI00193DE84E (protein ALP1-like n=2 Tax=Solenopsis invicta TaxID=13686 RepID=UPI00193DE84E) HSP 1 Score: 122 bits (305), Expect = 2.810e-27 Identity = 72/240 (30.00%), Postives = 125/240 (52.08%), Query Frame = 3 Query: 486 ERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGACILGDSAFAESAWMRTPIGTPQTRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFI 1205 ++VAV +Y+L R + + +V + V + + + + +Y+ P+ ++ ++ +E + + +IG IDG+HIE + PK+ + F + K + S ++LAIVD+ G FR V PGSC D+ +L+E+ Y ++ PK + M I+GD A+ W+ + E FN +S R +E AFGRLK ++R L K ++C + ++ AC VLHNF+ Sbjct: 95 KQVAVALYKLASTAEYRVIGNAMGIHKSSVKKCLYRVIKAINKVMLQNYINMPNENKANLIASNFENKCFIPQIIGSIDGTHIEIIPPKEGYR-DFINRKGWPSYNVLAIVDHNGRFRNIVIKHPGSCHDAAVLKESMLYKDADTLIPKKTRNINGMEIPFIIVGDPAYPLLPWLIKGFSGSLSSEEESFNVYLNSARVSIEMAFGRLKARWRILHK-INCDYSFAPEIIAACCVLHNFV 332
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: A0A2S2ND01_SCHGA (Putative nuclease HARBI1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2ND01_SCHGA) HSP 1 Score: 119 bits (299), Expect = 2.250e-26 Identity = 86/277 (31.05%), Postives = 133/277 (48.01%), Query Frame = 3 Query: 402 TFKELVKRLYGTTDFCRKGERGPMFDPC---ERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESETPKPPKRRRLMYDGAC----ILGDSAFAESAWMRTPIGTPQTRPE--RFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFI 1205 TF + + + T C+K E DP ER+ + + L RQ A+ F +S+ +VS + +EV + + LR ++R P+ + + + + + N IG IDG HI P ++ + +Y+YK F+SI LLAIVD F GA G DSG+L + Y R+E T K P + L +GD AF + P Q E ++NY+ S R VE AFG KFR L+K ++ ++ + ++ A +LHN I Sbjct: 78 TFDYIAQNI---TPICQK-EYSNFQDPISVEERLLITIRYLATGIAFRQIAMSFRVSKTSVSYIVIEVCQAIWTTLRDVHMRKPTIKDFENTADAFYNKWNFPNCIGSIDGKHIRVKCPNNSGSM-YYNYKHFFSIVLLAIVDANYRFVLIDIGAYGKDSDSGVLNNSKIYHRIEKGTLKVPSAKLLPSTTNMAPFVFIGDEAFPLREHLLRPFPKKQLSDEDKSYYNYRLSRARMTVECAFGIAASKFRILQKSIETKIENADHIVKAICILHNVI 349
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: A0A7M5XN08_9CNID (DDE Tnp4 domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XN08_9CNID) HSP 1 Score: 119 bits (298), Expect = 3.690e-26 Identity = 81/250 (32.40%), Postives = 125/250 (50.00%), Query Frame = 3 Query: 486 ERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKG---LRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVSGAPGSCGDSGILQETDFYARVESET--PKPPKRRRLMYDGACILGDSAFAESAWMRTPIG--TPQTRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFIYLR 1214 +RVAV ++RL + R + F + + T+ ++ + + + R +++ +P + ++ E E L V+G IDG+H+E L P ++ ++S KR Y+I +V +F FV+G PGS D+ LQ TD + + E+ET P K M ILGD A+ S W+ P P +R FN SS R VE FG LK ++R L K LD L + ++ CVVLHN +R Sbjct: 124 KRVAVSIWRLSNGASYRTVSKTFGVGKTTIVEINQDFVIALLQHTR-EFIHFPETELETAIAIEKFHESAGCELPQVVGAIDGTHMEILKPDSESRVDYFSRKRKYTIMSQGVVGANSIFLDFVTGFPGSIHDARALQFTDLFRKAENETILTTPKKVIDGMRIRPLILGDGAYPASTWLLKPYPHIAPLDAEQRNFNRALSSSRCTVEIGFGLLKSRWRCLLKRLDYNLENIPGVVMVCVVLHNICQIR 372
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Match: UPI00196341A0 (protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1-like n=2 Tax=Polypteridae TaxID=8289 RepID=UPI00196341A0) HSP 1 Score: 118 bits (295), Expect = 1.010e-25 Identity = 76/251 (30.28%), Postives = 129/251 (51.39%), Query Frame = 3 Query: 486 ERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLRADYVRWPSPSEQKKMSKEWELEKGLRNVIGGIDGSHIETLAPKDNLQLAFYSYKRFYSISLLAIVDNQGLFRWFVS-GAPGSCGDSGILQETDFYARVESETPKPPKRRRL--MYDGACILGDSAFAESAWMRTPIGTPQ--TRPERFFNYKHSSQRFRVEHAFGRLKKKFRALRKGLDCRLAHCSTLLNACVVLHNFIYLREGE 1223 +RVA+ ++RL + R + F + + T + V+ ++ E+L + Y++ PS + + + + + + G G IDG+HI LAP ++ +Y+ K FYS+ L +VD++ F W ++ G PG D+ + + Y R +S T P R + +LGD+A+ W+ P Q T + FN + S R VE FGRLK ++R LRK DC + + + ++ AC +LHNF + E Sbjct: 138 QRVAICVWRLATNVEFRTISHLFGIGQSTAVTIANHVSSIIVEKLLSVYIKTPSAHDFRNIIQGFRDQWGFPQCGGAIDGTHIGILAPPES-PADYYNPKGFYSVILQGVVDHRLCF-WDINVGWPGKVHDARVFGNSSLYERGQSGTLFPNITERFGGIDVPVVMLGDAAYPLLPWLMKPYPENQQMTPAQLTFNNRLSKARMTVERTFGRLKGRWRCLRKRYDCHINNINNIIAACCILHNFCEINNEE 386 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig106.1006.1 >prot_C-linearis_contig106.1006.1 ID=prot_C-linearis_contig106.1006.1|Name=mRNA_C-linearis_contig106.1006.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=262bp MFDPCERVAVFMYRLGGDCTCRQTAIQFNLSEGTVSQVTLEVARLVEERLback to top mRNA from alignment at C-linearis_contig106:443556..446958- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig106.1006.1 ID=mRNA_C-linearis_contig106.1006.1|Name=mRNA_C-linearis_contig106.1006.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3403bp|location=Sequence derived from alignment at C-linearis_contig106:443556..446958- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig106:443556..446958- >mRNA_C-linearis_contig106.1006.1 ID=mRNA_C-linearis_contig106.1006.1|Name=mRNA_C-linearis_contig106.1006.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1572bp|location=Sequence derived from alignment at C-linearis_contig106:443556..446958- (Chordaria linearis ClinC8C monoicous)back to top |