mRNA_C-linearis_contig106.1003.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5JE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE40_9PHAE) HSP 1 Score: 145 bits (367), Expect = 2.090e-42 Identity = 70/98 (71.43%), Postives = 78/98 (79.59%), Query Frame = 2 Query: 2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
RSD D RV LA R+WH+DDISRASGDSG K MWR SKK GE H RR+LM++GD+V RKFL+WPEY LKAELL EDS+F DPGRT FL TRCGCL
Sbjct: 27 RSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCL 124
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5JG47_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG47_9PHAE) HSP 1 Score: 144 bits (363), Expect = 3.360e-42 Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = 2 Query: 2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
RSD D RV LA R+WH+DDISRASGDSG K MWR SKK GE H RR+LM++GD+V RKFL+WPEY LKAELL EDS+F DPGRT FL TRCGC
Sbjct: 27 RSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFADPGRTLFLSTRCGCF 124
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5KI39_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI39_9PHAE) HSP 1 Score: 143 bits (360), Expect = 5.360e-40 Identity = 67/98 (68.37%), Postives = 79/98 (80.61%), Query Frame = 2 Query: 2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
R+D D RV +LA R+WH+DDISRASGDSG + +WR SKK GE H RR+LM++GD+V RKFL+WPEY LKAELL EDS+F DPGRT FL TRCGCL
Sbjct: 27 RTDKMDERVMDLARRFWHSDDISRASGDSGTEAVWRPSKKAGEEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFTDPGRTMFLSTRCGCL 124
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5K491_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K491_9PHAE) HSP 1 Score: 144 bits (362), Expect = 3.070e-38 Identity = 69/98 (70.41%), Postives = 77/98 (78.57%), Query Frame = 2 Query: 2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
RSD D RV LA R+WH+DDISRASGDSG K MWR SKK GE H RR+LM++GD+V KFL+WPEY LKAELL EDS+F DPGRT FL TRCGCL
Sbjct: 27 RSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDSSFTDPGRTLFLSTRCGCL 124
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5KT99_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT99_9PHAE) HSP 1 Score: 142 bits (359), Expect = 1.880e-37 Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 2 Query: 2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
RSD D RV LA R+WH+DDISRASGDSG K MWR SKK GE H RR+LM++GD+V KFL+WPEY LKAELL ED++F DPGRT FL TRCGCL
Sbjct: 292 RSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCL 389
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE) HSP 1 Score: 142 bits (359), Expect = 1.940e-37 Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 2 Query: 2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
RSD D RV LA R+WH+DDISRASGDSG K MWR SKK GE H RR+LM++GD+V KFL+WPEY LKAELL ED++F DPGRT FL TRCGCL
Sbjct: 916 RSDKMDERVMGLARRFWHSDDISRASGDSGTKAMWRPSKKAGEEYHPRRQLMVAGDQVWHKFLKWPEYLGLKAELLREDNSFTDPGRTLFLSTRCGCL 1013
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5JJU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJU0_9PHAE) HSP 1 Score: 122 bits (306), Expect = 7.850e-33 Identity = 62/98 (63.27%), Postives = 70/98 (71.43%), Query Frame = 2 Query: 2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
RSD D RV LA R+WH+DDISRASGDSG E H RR+LM++GD+V RKFL+WPEY LKAELL EDS+F DPGRT FL TRCGCL
Sbjct: 27 RSDKMDERVMGLARRFWHSDDISRASGDSG------------EEYHPRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFADPGRTLFLSTRCGCL 112
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5KAT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT1_9PHAE) HSP 1 Score: 123 bits (309), Expect = 5.580e-32 Identity = 63/98 (64.29%), Postives = 71/98 (72.45%), Query Frame = 2 Query: 2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
RSD D RV LA R+WHT +S G K MWR SKK GE HSRR+LM++GD+V RKFL+WPEY LKAELL EDS+F DPGRT FL TRCGCL
Sbjct: 258 RSDKMDERVMGLARRFWHTAVLSYTL--VGTKAMWRPSKKAGEEYHSRRQLMVAGDQVWRKFLKWPEYLGLKAELLREDSSFADPGRTLFLSTRCGCL 353
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5JF90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF90_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.230e-27 Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 2 Query: 2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
RSD T+P V LA +WH+DD+SRA+G+SGK M++ SKK H RR+LM GD V R FLE Y ALK+ LL +DS F DPGRTTFL TRCGCL
Sbjct: 281 RSDVTNPEVMALARAFWHSDDVSRATGNSGK-DMYKESKKRDAPSHPRRQLMHKGDSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCL 377
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE) HSP 1 Score: 114 bits (285), Expect = 1.840e-27 Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 2 Query: 2 RSDATDPRVTELAGRYWHTDDISRASGDSGKKQMWRASKKEGEA*HSRRELMISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCL 295
RSD T+P V LA +WH+DD+SRA+G+SGK M++ SKK H RR+LM GD V R FLE Y ALK+ LL +DS F DPGRTTFL TRCGCL
Sbjct: 281 RSDVTNPEVMALARAFWHSDDVSRATGNSGK-DMYKESKKRDAPSHPRRQLMHKGDSVWRMFLESRRYLALKSRLLEQDSNFTDPGRTTFLSTRCGCL 377 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig106.1003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig106.1003.1 >prot_C-linearis_contig106.1003.1 ID=prot_C-linearis_contig106.1003.1|Name=mRNA_C-linearis_contig106.1003.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=47bp MISGDKVVRKFLEWPEYQALKAELLAEDSTFKDPGRTTFLPTRCGCLback to top mRNA from alignment at C-linearis_contig106:429685..430157- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig106.1003.1 ID=mRNA_C-linearis_contig106.1003.1|Name=mRNA_C-linearis_contig106.1003.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=473bp|location=Sequence derived from alignment at C-linearis_contig106:429685..430157- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig106:429685..430157- >mRNA_C-linearis_contig106.1003.1 ID=mRNA_C-linearis_contig106.1003.1|Name=mRNA_C-linearis_contig106.1003.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at C-linearis_contig106:429685..430157- (Chordaria linearis ClinC8C monoicous)back to top |