mRNA_C-linearis_contig105.955.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig105.955.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI) HSP 1 Score: 226 bits (577), Expect = 1.030e-70 Identity = 117/215 (54.42%), Postives = 147/215 (68.37%), Query Frame = 1 Query: 1 GWDGGDCCQCTCDPTGRYDDDYECHQAGYWDCKDESAPCFGEEPIIIDDDTTTDDFSGTYTEDETTYEFLPWEQDGPLPTVEGAVEVGDKTEVGVTATGYDERPGGSAGMAGCGEQGGDGCEAANSRDGIASEVESRWSCATSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKANERARTLDPIMRSDPSCCADRESPVTETRPQVYINGEMTMTH 645 G+DGGDCC CTC+ +DDDY C + ++DCKD SA CFGEE + + D +T G ++ +T YEF+PWEQ PLPTV+ AVEVG KTEV V+AT +D R G S+G GCGE GG+GC A N+RDGI++E+ESRWSCA L++ GPCQIE++FAEPQ+IVDIQVAFWK NER RTL +VY+NGE+T TH Sbjct: 76 GYDGGDCCSCTCESV--WDDDYTCGEDAFFDCKDPSAACFGEETAMGNGDDST----GRSSDPDTEYEFVPWEQTEPLPTVDDAVEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTL-----------------------EVYVNGELTHTH 261
BLAST of mRNA_C-linearis_contig105.955.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI) HSP 1 Score: 228 bits (581), Expect = 7.060e-69 Identity = 127/217 (58.53%), Postives = 150/217 (69.12%), Query Frame = 1 Query: 1 GWDGGDCCQCTCDPTGRYDDDYECH-QAGYWDCKDESAPCFGEEPIIIDDDTTTDDFSGTYTEDET-TYEFLPWEQDGPLPTVEGAVEVGDKTEVGVTATGYDERPGGSAGMAGCGEQGGDGCEAANSRDGIASEVESRWSCATSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKANERARTLDPIMRSDPSCCADRESPVTETRPQVYINGEMTMTH 645 G+DGGDCC CTC+ YDDDY C + G +DCKD +A CFGEEP T +DDFS T+D+ +YEF+PWE+ LPTV+GAVEVG KTEVGV++T +D RPG S+G AGCGE GG GC A N+RDGI SE+ESRWSCAT LV+ GPCQIE+TFAEPQ I+DIQVAFWK NER RTL +V+INGEMT TH Sbjct: 288 GYDGGDCCSCTCESP--YDDDYSCSSEYGSFDCKDPNASCFGEEP------TGSDDFS---TDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTL-----------------------EVHINGEMTHTH 470
BLAST of mRNA_C-linearis_contig105.955.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI) HSP 1 Score: 214 bits (545), Expect = 8.450e-67 Identity = 122/216 (56.48%), Postives = 146/216 (67.59%), Query Frame = 1 Query: 4 WDGGDCCQCTCDPTGRYDDDYECH-QAGYWDCKDESAPCFGEEPIIIDDDTTTDDFSGTYTEDET-TYEFLPWEQDGPLPTVEGAVEVGDKTEVGVTATGYDERPGGSAGMAGCGEQGGDGCEAANSRDGIASEVESRWSCATSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKANERARTLDPIMRSDPSCCADRESPVTETRPQVYINGEMTMTH 645 +DGGDCC+CTC+ ++DDY C + G ++CKD +A CFGEE T +DDFS T+D+ +YEF+PWE+ LPTV+GAVEVG KTEVGV++T +D RPG GCGE GG GC AAN+RDGI SE+ESRWSCAT LV+ GPCQIE+TFAEPQ IVDIQVAFWK NER RTL +VYINGEMT TH Sbjct: 15 YDGGDCCECTCESA--WNDDYTCSSEHGIFNCKDPNASCFGEET------TGSDDFS---TDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDD----GCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL-----------------------EVYINGEMTHTH 192
BLAST of mRNA_C-linearis_contig105.955.1 vs. uniprot
Match: D7FI88_ECTSI (Similar to Pappalysin-2 (Pregnancy-associated plasma protein-A2) (PAPP-A2) (Pregnancy-associated plasma protein-E1) (PAPP-E) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI88_ECTSI) HSP 1 Score: 211 bits (538), Expect = 3.150e-65 Identity = 117/216 (54.17%), Postives = 137/216 (63.43%), Query Frame = 1 Query: 1 GWDGGDCCQCTCDPTGRYDDDYECH-QAGYWDCKDESAPCFGEEPIIIDDDTTTDDFSGTYTEDETTYEFLPWEQDGPLPTVEGAVEVGDKTEVGVTATGYDERPGGSAGMAGCGEQGGDGCEAANSRDGIASEVESRWSCATSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKANERARTLDPIMRSDPSCCADRESPVTETRPQVYINGEMTMTH 645 G+DGGDCC CTC YDDDY C + GY+DC+D +A CFGE DD + DD+ +YEFL WE+ LPTV AVEVG KTEVGV+AT +D RPG S GCGE GG GC A N+RDGI S++ESRWSCATSLV GPCQIE+TFAEPQ+IVDIQVAFW NER TL +V++NGE+T TH Sbjct: 47 GYDGGDCCSCTCQSA--YDDDYSCSSEYGYFDCQDPTASCFGEGTTGSDDFSFHDDYQPM------SYEFLSWEETESLPTVVDAVEVGTKTEVGVSATAHDVRPGSSGDDVGCGEVGGLGCTATNTRDGIVSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTL-----------------------EVHVNGELTHTH 231
BLAST of mRNA_C-linearis_contig105.955.1 vs. uniprot
Match: A0A6H5KB04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB04_9PHAE) HSP 1 Score: 219 bits (559), Expect = 3.560e-65 Identity = 134/245 (54.69%), Postives = 161/245 (65.71%), Query Frame = 1 Query: 1 GWDGGDCCQCTCDPTGRYDDDYECH-QAGYWDCKDESAPCFGEEPIIIDDDTTTDDFSGTYTEDET-TYEFLPWEQDGPLPTVEGAVEVGDKTEVGVTATGYDERPGGSAGMAGCGEQGGDGCEAANSRDGIASEVESRWSCATSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKANERARTLDPIMRSDPS---------------CC---------ADRESPV---TETRP-QVYINGEMTMTH 645 G+DGGDCC CTC YDDDY C + G +DC+D +A CFGEE T +DD+S T+DE +YEF+PWE+ LPTV+GAVEVG KTEVGV+AT +D R G S+G GCGE GG GC A N+RDGI SE+ESRWSCAT LV+ GPCQIE+TFAEPQ I+DIQVAFWK NER RTL+ +R+ PS CC A +S + +T P QV+INGEMT TH Sbjct: 188 GYDGGDCCSCTCQSP--YDDDYLCSSEYGSFDCQDPNASCFGEES------TGSDDYS---TDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLE--VRATPSRLKTIEITSRLFWLLCCPRQHLRDCGARSKSFIFLTAQTFPTQVHINGEMTHTH 419
BLAST of mRNA_C-linearis_contig105.955.1 vs. uniprot
Match: D7FL19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL19_ECTSI) HSP 1 Score: 207 bits (528), Expect = 1.390e-64 Identity = 118/207 (57.00%), Postives = 147/207 (71.01%), Query Frame = 1 Query: 4 WDGGDCCQCTCDPTGRYDDDYECH-QAGYWDCKDESAPCFGEEPIIIDDDTTTDDFSGTYTEDET-TYEFLPWEQDGPLPTVEGAVEVGDKTEVGVTATGYDERPGGSAGMAGCGEQGGDGCEAANSRDGIASEVESRWSCATSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKANERARTLDPIMRSDPSCCADRESPVTETRPQVY 618 +DGGDCC+CTC+ ++DDY C + G ++CKD +A CFGEE T +DDFS T+D+ +YEF+PWE+ LPTV+GAVEVG KTEVGV++T +D RPG GCGE GG GC AAN+RDGI SE+ESRWSCAT LV+ GPCQIE+TFAEPQ IVDIQVAFWK NER RTL+ +R+ PS +TET ++ Sbjct: 27 YDGGDCCECTCESA--WNDDYTCSSEHGIFNCKDPNASCFGEET------TGSDDFS---TDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDD----GCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLE--VRATPS-----RLKITETTSPLF 211
BLAST of mRNA_C-linearis_contig105.955.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI) HSP 1 Score: 214 bits (544), Expect = 1.200e-63 Identity = 122/216 (56.48%), Postives = 146/216 (67.59%), Query Frame = 1 Query: 4 WDGGDCCQCTCDPTGRYDDDYECH-QAGYWDCKDESAPCFGEEPIIIDDDTTTDDFSGTYTEDET-TYEFLPWEQDGPLPTVEGAVEVGDKTEVGVTATGYDERPGGSAGMAGCGEQGGDGCEAANSRDGIASEVESRWSCATSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKANERARTLDPIMRSDPSCCADRESPVTETRPQVYINGEMTMTH 645 +DGGDCC+CTC+ ++DDY C + G ++CKD +A CFGEE T +DDFS T+D+ +YEF+PWE+ LPTV+GAVEVG KTEVGV++T +D RPG GCGE GG GC AAN+RDGI SE+ESRWSCAT LV+ GPCQIE+TFAEPQ IVDIQVAFWK NER RTL +VYINGEMT TH Sbjct: 266 YDGGDCCECTCESA--WNDDYTCSSEHGTFNCKDPNASCFGEET------TGSDDFS---TDDQPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSSTAHDVRPGDD----GCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTL-----------------------EVYINGEMTHTH 443
BLAST of mRNA_C-linearis_contig105.955.1 vs. uniprot
Match: A0A6H5JM92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM92_9PHAE) HSP 1 Score: 213 bits (543), Expect = 1.560e-61 Identity = 118/216 (54.63%), Postives = 138/216 (63.89%), Query Frame = 1 Query: 1 GWDGGDCCQCTCDPTGRYDDDYECH-QAGYWDCKDESAPCFGEEPIIIDDDTTTDDFSGTYTEDETTYEFLPWEQDGPLPTVEGAVEVGDKTEVGVTATGYDERPGGSAGMAGCGEQGGDGCEAANSRDGIASEVESRWSCATSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKANERARTLDPIMRSDPSCCADRESPVTETRPQVYINGEMTMTH 645 G+DGGDCC CTC YDDDY C + GY+DC+D SA CFGE DD + DD+ +YEF+ WE+ LPTV AVEVG KTEVGV+AT +D RPG S G GCGE GG GC A N+RDGI S++ESRWSCATSLV GPCQIE+TFAEPQ+IVDIQVAFW NER TL +V++NGE+T TH Sbjct: 508 GYDGGDCCSCTCQSA--YDDDYSCSSEYGYFDCQDPSASCFGEGTTGSDDFSFHDDYQPM------SYEFVSWEETDSLPTVVDAVEVGTKTEVGVSATAHDLRPGSSGGDVGCGEVGGLGCTATNTRDGIFSDIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTL-----------------------EVHVNGELTHTH 692
BLAST of mRNA_C-linearis_contig105.955.1 vs. uniprot
Match: A0A6H5JXR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXR2_9PHAE) HSP 1 Score: 213 bits (543), Expect = 6.810e-61 Identity = 118/191 (61.78%), Postives = 141/191 (73.82%), Query Frame = 1 Query: 1 GWDGGDCCQCTCDPTGRYDDDYECH-QAGYWDCKDESAPCFGEEPIIIDDDTTTDDFSGTYTEDET-TYEFLPWEQDGPLPTVEGAVEVGDKTEVGVTATGYDERPGGSAGMAGCGEQGGDGCEAANSRDGIASEVESRWSCATSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKANERARTLDPIMRSDPS 567 G+DGGDCC CTC YDDDY C + G +DC+D +A CFGEE T +DD+S T+DE +YEF+PWE+ LPTV+GAVEVG KTEVGV+AT +D R G S+G GCGE GG GC A N+RDGI SE+ESRWSCAT LV+ GPCQIE+TFAEPQ I+DIQVAFWK NER RTL+ +R+ PS Sbjct: 550 GYDGGDCCSCTCQSP--YDDDYLCSSEYGSFDCQDPNASCFGEES------TGSDDYS---TDDEPMSYEFVPWEETEALPTVDGAVEVGTKTEVGVSATAHDVRAGRSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLE--VRATPS 727
BLAST of mRNA_C-linearis_contig105.955.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI) HSP 1 Score: 201 bits (512), Expect = 7.280e-58 Identity = 112/216 (51.85%), Postives = 134/216 (62.04%), Query Frame = 1 Query: 1 GWDGGDCCQCTCDPTGRYDDDYECH-QAGYWDCKDESAPCFGEEPIIIDDDTTTDDFSGTYTEDETTYEFLPWEQDGPLPTVEGAVEVGDKTEVGVTATGYDERPGGSAGMAGCGEQGGDGCEAANSRDGIASEVESRWSCATSLVEGGGPCQIEYTFAEPQDIVDIQVAFWKANERARTLDPIMRSDPSCCADRESPVTETRPQVYINGEMTMTH 645 G+DGGDCC CTC +DDDY C + DCKD +A CFGE DD T DD+ T +YEF+ WE+ LPTV AVEVG KTEVGV+AT +D RP S+ GCG+ GG GC A N+RDGI S++ESRWSCAT LV G CQIE++FAEPQ++VDIQVAFWK NER RTL V++NGE+T TH Sbjct: 380 GYDGGDCCSCTCQNAWDWDDDYSCSSEYNSLDCKDPTASCFGEGTTGSDDFTFHDDYQPT------SYEFVHWEETESLPTVIDAVEVGTKTEVGVSATAHDVRPRSSSDDVGCGQVGGLGCTATNTRDGIVSDIESRWSCATILVPDEGACQIEFSFAEPQNVVDIQVAFWKGNERTRTL-----------------------WVHVNGELTHTH 566 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.955.1 >prot_C-linearis_contig105.955.1 ID=prot_C-linearis_contig105.955.1|Name=mRNA_C-linearis_contig105.955.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=215bp GWDGGDCCQCTCDPTGRYDDDYECHQAGYWDCKDESAPCFGEEPIIIDDDback to top mRNA from alignment at C-linearis_contig105:408769..409649+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.955.1 ID=mRNA_C-linearis_contig105.955.1|Name=mRNA_C-linearis_contig105.955.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=881bp|location=Sequence derived from alignment at C-linearis_contig105:408769..409649+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:408769..409649+ >mRNA_C-linearis_contig105.955.1 ID=mRNA_C-linearis_contig105.955.1|Name=mRNA_C-linearis_contig105.955.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at C-linearis_contig105:408769..409649+ (Chordaria linearis ClinC8C monoicous)back to top |