mRNA_C-linearis_contig105.951.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig105.951.1
Unique NamemRNA_C-linearis_contig105.951.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig105.951.1 vs. uniprot
Match: D7G0S7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0S7_ECTSI)

HSP 1 Score: 408 bits (1049), Expect = 8.490e-133
Identity = 200/259 (77.22%), Postives = 223/259 (86.10%), Query Frame = 2 
Query:  329 ASRDDHTGR--KDQWEGWDMEDNGTE-----EEAVIDVKGRDWRLFRKNLINLYGEDNGKEPWGDGCWAHDIGTVEAGSLLIATEEIDSGTFHQSAILILSHGQDTGTLGLILNRPGPQRLHSLPGLQADLAEVFGDSQVFDGGPMGLGTMTVLHDANVEGSDPILNG-VYAGGFESLVEATRQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNPLWGKLLRLMGGRYREVAQRNEPRM 1081
            +SRD  +G   +DQ   W+  D         ++ + +VKGRDWRLFRKNLI  YGED GK+PW DGCWAHDIGTVEAG LLIATEEIDSGTFHQS IL+LSH +D GTLGLILNRPGPQRL SLPGLQ DLAEVFGDSQVFDGGPMGLGTMTVLHDANVEGSDP+L+G V+AGGF++LV+ TRQG VSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITE CD+PF+PLW KLLRLMGG+Y+EVA+RNEPR+
Sbjct:   53 SSRDGGSGGGVEDQGRRWEEMDXXXXXXXXXDDLLSEVKGRDWRLFRKNLITRYGEDIGKDPWSDGCWAHDIGTVEAGCLLIATEEIDSGTFHQSVILVLSHARDQGTLGLILNRPGPQRLRSLPGLQPDLAEVFGDSQVFDGGPMGLGTMTVLHDANVEGSDPVLDGGVFAGGFDTLVDVTRQGTVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITEHCDKPFHPLWTKLLRLMGGKYQEVAKRNEPRL 311
[Close]
BLAST of mRNA_C-linearis_contig105.951.1 vs. uniprot
Match: A0A836CNM8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNM8_9STRA)

HSP 1 Score: 204 bits (519), Expect = 5.390e-56
Identity = 112/243 (46.09%), Postives = 141/243 (58.02%), Query Frame = 2 
Query:  380 MEDNGTEEEAVI-DVKGRDWRLFRKNLINLYGEDN---------GKEPWGDGCWAHDIGTVEAGSLLIATEEIDSGTFHQSAILILSHGQDTGTLGLILNRPGPQRLHSLPGLQADLAEVFGDSQVFDGGPMGLGTMTVLHDAN-VEGSDPILNGVYAGGFESLVEATRQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNP--LWGKLLRLMGGRYREVAQRN 1069
            M  +G EE  VI DVK  DWR FR NL+    E+           +  W D  WAH+IG VE G +L+A E +  G FHQ+A+L+L H  + GTLGLILNRP  +R+  +PGL  D+   FG   V  GGP+G G MT LH      G   I  G+Y GGFE LV   ++GRV    +R  HGH+AW PGQL  EL  + W++AAAAP L+T        P  +W +LL LMGG Y EVA+RN
Sbjct:   38 MSAHGDEELDVIPDVKQLDWRAFRANLVRRSREEGFGGSSAXXXARRKWRDDAWAHEIGVVEKGCVLLAHETLQ-GVFHQTAVLVLDHDDNAGTLGLILNRPTKRRIAGVPGLGRDMQAAFGQCAVHYGGPVGAGGMTALHGVKQARGGQEIAPGLYVGGFEDLVRLAQEGRVDGSSLRLAHGHAAWGPGQLSRELRADFWYLAAAAPALVTGAGAAGRAPSRMWHQLLDLMGGSYAEVARRN 279
[Close]
BLAST of mRNA_C-linearis_contig105.951.1 vs. uniprot
Match: A0A7S2Y026_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y026_9STRA)

HSP 1 Score: 188 bits (477), Expect = 4.030e-50
Identity = 94/229 (41.05%), Postives = 136/229 (59.39%), Query Frame = 2 
Query:  386 DNGTEEEAVIDVKGRDWRLFRKNLINLYGEDNGKEPWGDGCWAHDIGTVEAGSLLIATEEIDSGTFHQSAILILSHGQDTGTLGLILNRPGPQRLHSLPGLQADLAEVFGDSQVFDGGPMGLGTMTVLHDAN-VEGSDPILNGVYAGGFESLVEATRQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNPLWGKLLRLMGGRYREVAQRN 1069
            D   + E + DV   DWR FR  L+  Y     +E W +  WAHDIG +E G LL+A++ +D  TF QS IL+L+H  D GT G++LNRP    + ++  +   L E FG++ ++ GGPMGL  + V+H    VEG+  I  G+Y GG   L E   QG++   +VRF  GH+AW+PGQL+ E++   W+ A  +PEL+   C     PLW ++L LMGG Y E+ ++N
Sbjct:   55 DEAGDSETINDVGNVDWRDFRAKLVAQYSGKE-RENWTEDRWAHDIGQIENGCLLLASDVMDDDTFWQSVILVLNHDPDNGTFGIVLNRPTGAHVCNVRDIVPALREAFGEAPLYLGGPMGLDEVNVVHAVEGVEGAIEIRKGLYHGGVAGLQERAEQGQLDLAKVRFEAGHAAWNPGQLEQEIEKGWWYPAVCSPELVVRPCIGLPVPLWCQILDLMGGEYAEIGKKN 282
[Close]
BLAST of mRNA_C-linearis_contig105.951.1 vs. uniprot
Match: A0A835Z6U1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U1_9STRA)

HSP 1 Score: 154 bits (388), Expect = 5.920e-37
Identity = 95/254 (37.40%), Postives = 122/254 (48.03%), Query Frame = 2 
Query:  404 EAVIDVKGRDWRLFRKNLINLYGEDNGKEP---WGDGCWAHDIGTVEAGSLLIATEEIDSGTFHQSAILILSHGQDTGTLGLILNRPGPQRLHSLPGLQADLAEVFGDSQVFDGGPMGLGTMTVLHDAN-VEGSDPILNGVYAGGFESLV----EAT--------------------------------RQGRVSKDRVRFVHGHSAWSPGQ---------------------LQGELDHNQWFVAAAAPELIT 982
            + + DVK +DWR FR NL+    E+    P   W  G WAHDIG VE G +L+A E ++ G F+Q+ +LIL H    GTLGLI+NRP  +R+  +PGL  D+   FGD  V  GGP+G G MT LH A   +G   +   VY GG E LV    EAT                                ++G      +R   GH+AW PGQ                     L+ EL  N W+VA+AAPELIT
Sbjct:   57 DTIPDVKSKDWRAFRANLVRRSAEEGFGAPHRGWSGGKWAHDIGCVEKGCVLLAHESLE-GVFYQTVVLILDHDDTRGTLGLIINRPTKKRIAGVPGLGRDVQRAFGDCPVLYGGPVGAGGMTALHSAGEAKGCQEVAPSVYVGGLEGLVRLAQEATPWSVVRRIAALLWRRLVNLGGKGRALRSGGVAQRGHAHGSTLRLAVGHAAWVPGQEKETASNTQAPAPLGAERLRHLKRELRANFWYVASAAPELIT 309
[Close]
BLAST of mRNA_C-linearis_contig105.951.1 vs. uniprot
Match: A0A2J7ZXQ0_9CHLO (Uncharacterized protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZXQ0_9CHLO)

HSP 1 Score: 130 bits (328), Expect = 7.520e-30
Identity = 79/217 (36.41%), Postives = 120/217 (55.30%), Query Frame = 2 
Query:  431 DWRLFRKNLINLYGEDNGKE-PWGDGCWAHDIGTVEAGSLLIATEEI---DSGTFHQSAILILSHGQDTGTLGLILNRPGPQRLHSLPGLQADLAEVFGDSQVFDGGPMGLGTMTVLHD-ANVEGSDPILNGVYAGGFESLVEATRQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELIT-ELCDQPFNPLWGKLLRLMGGRYREVAQ 1063
            DWR FR  L++  G+  G+  P   G WAH I   E G++L+A   +       FH++ IL+L HG D+G+ GLILNRP   R+  +P L     + F D +++ GG +G G + V+H    +EG + ++ GVY GG +S  +A   GR      R+   ++ W+ GQL  E     WF AAA+P+++  E+  +     W KLL LMGG Y+ ++Q
Sbjct:   73 DWREFRAKLVSQ-GKGQGQAGPSTSGEWAHAISKPEKGAVLLAHPLMFRQSQPYFHRAVILLLEHG-DSGSYGLILNRPSKLRIGDVP-LNRPQTQ-FADCRLYVGGDVGSGQVQVMHPHGELEGVEEVMKGVYLGGMDSARDAVEAGRAEAKDFRWFSAYAGWAAGQLAAECKRGVWFTAAASPKVVLQEVALEEGADYWHKLLELMGGDYQGLSQ 285
[Close]
BLAST of mRNA_C-linearis_contig105.951.1 vs. uniprot
Match: A0A6V0YDC5_9STRA (Hypothetical protein n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6V0YDC5_9STRA)

HSP 1 Score: 127 bits (319), Expect = 8.670e-28
Identity = 68/196 (34.69%), Postives = 104/196 (53.06%), Query Frame = 2 
Query:  509 WAHDIGTVEAGSLLIATEEIDSGTFHQSAILILSHGQDTGTLGLILNRPGPQRLHSLPG-----LQADLAEVFGDSQVFDGGPMGLGTMTVLHD-ANVEGSDPILNGVYAGGFESLVEATRQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNP------LWGKLLRLMGGRYREVA 1060
            WAH +  VE G +LIA E++  G FHQ+ +LI+ H ++TG+ G+++NRP P  L  +       +   L   F  + V  GGP+     + LH    V GS  +  GV+ GG   L++  R+  +    V FV GH+AW PGQL  E++   W++AAA+ +LI      P +       LW  +L  MG +Y ++A
Sbjct:  197 WAHPLYHVEPGCILIANEKL-GGVFHQTVVLIIDHNENTGSTGMVINRPFPGNLIKIASDTDSNIDLSLKMAFSKAPVSYGGPVMQDQFSTLHGFGEVMGSKKVCPGVFVGGSSQLMQEVRRNHLHPTEVLFVKGHAAWVPGQLTREIEKGVWYIAAASADLILRYAGAPVSKDDNASDLWADVLSCMGEKYEDIA 391
[Close]
BLAST of mRNA_C-linearis_contig105.951.1 vs. uniprot
Match: A0A835TE63_CHLIN (Uncharacterized protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A835TE63_CHLIN)

HSP 1 Score: 124 bits (312), Expect = 1.230e-27
Identity = 75/217 (34.56%), Postives = 119/217 (54.84%), Query Frame = 2 
Query:  431 DWRLFRKNLINLYGEDNGKEPWGDGC--WAHDIGTVEAGSLLIATEEIDSGT---FHQSAILILSHGQDTGTLGLILNRPGPQRLHSLPGLQADLAEVFGDSQVFDGGPMGLGTMTVLHD-ANVEGSDPILNGVYAGGFESLVEATRQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNP-LWGKLLRLMGGRYREVA 1060
            DWR FR  L++   +  G+ P       WAH I   E G+LL+A   +   +   FH++AIL+L HG DTG+ G+ILNRP    +  +P  +    E F D +++ GG +G G + VLH   ++ G+  ++ GVY GG ++  +A   G+      R+   ++ W+PGQL  E     WF AAA+P+L+ +  +    P  W +L+ L+GG Y E++
Sbjct:   86 DWREFRAKLVS---QSRGQGPASTSADEWAHIIPKPEKGALLLAHPLLFQNSQTYFHRAAILLLEHG-DTGSYGVILNRPSTYFIRDIPLKRPQ--EQFNDCRLYVGGDVGGGEVQVLHPHGDLAGAVEVVKGVYMGGLDAGRDAIDAGKAKAQDFRWFSAYAGWAPGQLAMECKRGVWFTAAASPKLLLKEVEHGQGPSYWHELMTLLGGDYAELS 296
[Close]
BLAST of mRNA_C-linearis_contig105.951.1 vs. uniprot
Match: A0A7S1BIP2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIP2_9STRA)

HSP 1 Score: 125 bits (314), Expect = 9.370e-27
Identity = 72/204 (35.29%), Postives = 107/204 (52.45%), Query Frame = 2 
Query:  509 WAHDIGTVEAGSLLIATEEIDSGTFHQSAILILSHGQDTGTLGLILNRP---------GPQRLHSLPGLQADLAEVFGDSQVFDGGPMGLGTMTVLHDANV-EGSDPILNGVYAGGFESLVEATRQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNP-------LWGKLLRLMGGRYREVAQRN 1069
            WAH +  VE G LL+A+E++  G FHQ+ +LI+SH  + G++G+++NRP         GP R  ++P     +   F +S V  GGP+      +LH  N+ EG+  +  GV+ GG   L    R G     R   V GH+AW PGQLQ E+    W +AAA+ +LI        +P       LW ++L  M G Y+++A  N
Sbjct:  255 WAHPLSHVEKGCLLLASEKL-GGIFHQTVVLIISHNDNLGSMGVVINRPLGKKIKELSGPARKSTIPDA---MRSSFAESTVTYGGPVQTDHYAILHGYNLAEGAVELTKGVFVGGHTDLERDVRSGCFLPMRALLVKGHAAWVPGQLQREISKGVWHIAAASSDLILRYAGAKEDPETEFPDNLWSEILSAMDGDYKKIALAN 454
[Close]
BLAST of mRNA_C-linearis_contig105.951.1 vs. uniprot
Match: B8BYW5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYW5_THAPS)

HSP 1 Score: 122 bits (306), Expect = 3.510e-26
Identity = 65/196 (33.16%), Postives = 102/196 (52.04%), Query Frame = 2 
Query:  509 WAHDIGTVEAGSLLIATEEIDSGTFHQSAILILSHGQDTGTLGLILNRPGPQRLHSLPG-----LQADLAEVFGDSQVFDGGPMGLGTMTVLHD-ANVEGSDPILNGVYAGGFESLVEATRQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNP------LWGKLLRLMGGRYREVA 1060
            WAH +  +E G +L+A E++  G FHQ+ +LI+ H ++TG+ G+++NRP P  L  +       +   L   F  + V  GGP+     + LH    V+G+  +  GVY GG   L+   R+  +    V FV GH+AW PGQL  E++   W+V AA+ + I      P +       LW  +L  MG +Y+ +A
Sbjct:  186 WAHPMYHLEPGCILVANEKL-GGVFHQTVVLIIDHNENTGSTGMVINRPFPGNLIKIASDTDTNIDLSLKMAFSKAPVAYGGPVMQDQFSTLHGFGEVDGAKKVCPGVYVGGSSQLMLEVRRNTMQPTEVLFVKGHAAWVPGQLSREIEKGVWYVVAASADFILRYAGAPVSENDNQSDLWADILSCMGEKYQGIA 380
[Close]
BLAST of mRNA_C-linearis_contig105.951.1 vs. uniprot
Match: A0A250X9J3_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X9J3_9CHLO)

HSP 1 Score: 120 bits (300), Expect = 1.030e-25
Identity = 77/235 (32.77%), Postives = 113/235 (48.09%), Query Frame = 2 
Query:  431 DWRLFRKNLI---NLYGEDNGK--------EPWG----DGCWAHDIGTVEAGSLLIATE---EIDSGTFHQSAILILSHGQDTGTLGLILNRPGPQRLHSLPGLQADLAEVFGDSQVFDGGPMGLGTMTVLHDAN-VEGSDPILNGVYAGGFESLVEATRQGRVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCD------QPFNPLWGKLLRLMGGRYREVA 1060
            DWR FR  L+    +  ED            P G       WAH I   E G+LL+A     E     FHQ+ IL+L H  +TG++G+ILNRP    L  L   +  + + F   +++ GG +G   M +LH    ++G   ++ GVY GG E        G  + D  R+  G++ W PGQLQ E     WF AA +P+LI +  D            W ++L+LMGG Y++++
Sbjct:   98 DWRTFRARLVAQERMSSEDTSALTTDIDDVNPQGLMEHGSLWAHSIALPERGALLLAHPLMFEQSQQYFHQAVILLLDH-DETGSIGVILNRPSDYNLGKLVLSEPQMGQ-FDSCRLYVGGDVGDNRMQMLHSIQELQGCKEVVKGVYMGGIEGARSKVVAGEATADDFRWYAGYAGWGPGQLQSECKRGVWFTAAGSPDLILQRPDGSKRDPSSGKDYWHQVLQLMGGDYKKLS 330
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.951.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0S7_ECTSI8.490e-13377.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CNM8_9STRA5.390e-5646.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2Y026_9STRA4.030e-5041.05Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z6U1_9STRA5.920e-3737.40Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2J7ZXQ0_9CHLO7.520e-3036.41Uncharacterized protein n=1 Tax=Tetrabaena sociali... [more]
A0A6V0YDC5_9STRA8.670e-2834.69Hypothetical protein n=2 Tax=Skeletonema marinoi T... [more]
A0A835TE63_CHLIN1.230e-2734.56Uncharacterized protein n=2 Tax=Chlamydomonas TaxI... [more]
A0A7S1BIP2_9STRA9.370e-2735.29Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B8BYW5_THAPS3.510e-2633.16Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A250X9J3_9CHLO1.030e-2532.77Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig105contigC-linearis_contig105:268327..274203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score411.4
Seed ortholog evalue4e-112
Seed eggNOG ortholog2880.D7G0S7
KEGG koko:K07735
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Uncharacterized ACR, COG1678
EggNOG OGs2QRDU@2759,COG1678@1
Ec32 ortholog descriptionProtein of unknown function UPF0301
Ec32 orthologEc-23_001700.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons7
Model size2630
Cds size975
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927395.3781984-UTR-C-linearis_contig105:268326..2698721622927395.3781984-UTR-C-linearis_contig105:268326..269872Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 268327..269872 -
1690879675.2806816-UTR-C-linearis_contig105:268326..2698721690879675.2806816-UTR-C-linearis_contig105:268326..269872Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 268327..269872 -
1622927395.478269-UTR-C-linearis_contig105:274094..2742031622927395.478269-UTR-C-linearis_contig105:274094..274203Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 274095..274203 -
1690879675.3664722-UTR-C-linearis_contig105:274094..2742031690879675.3664722-UTR-C-linearis_contig105:274094..274203Chordaria linearis ClinC8C monoicousUTRC-linearis_contig105 274095..274203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927395.388522-CDS-C-linearis_contig105:269872..2699351622927395.388522-CDS-C-linearis_contig105:269872..269935Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 269873..269935 -
1690879675.2912092-CDS-C-linearis_contig105:269872..2699351690879675.2912092-CDS-C-linearis_contig105:269872..269935Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 269873..269935 -
1622927395.3989818-CDS-C-linearis_contig105:270425..2705001622927395.3989818-CDS-C-linearis_contig105:270425..270500Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 270426..270500 -
1690879675.3079553-CDS-C-linearis_contig105:270425..2705001690879675.3079553-CDS-C-linearis_contig105:270425..270500Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 270426..270500 -
1622927395.4140675-CDS-C-linearis_contig105:271117..2712071622927395.4140675-CDS-C-linearis_contig105:271117..271207Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 271118..271207 -
1690879675.3171723-CDS-C-linearis_contig105:271117..2712071690879675.3171723-CDS-C-linearis_contig105:271117..271207Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 271118..271207 -
1622927395.4261458-CDS-C-linearis_contig105:271717..2718491622927395.4261458-CDS-C-linearis_contig105:271717..271849Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 271718..271849 -
1690879675.3285646-CDS-C-linearis_contig105:271717..2718491690879675.3285646-CDS-C-linearis_contig105:271717..271849Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 271718..271849 -
1622927395.437002-CDS-C-linearis_contig105:272255..2724411622927395.437002-CDS-C-linearis_contig105:272255..272441Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 272256..272441 -
1690879675.3395402-CDS-C-linearis_contig105:272255..2724411690879675.3395402-CDS-C-linearis_contig105:272255..272441Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 272256..272441 -
1622927395.449375-CDS-C-linearis_contig105:272731..2728601622927395.449375-CDS-C-linearis_contig105:272731..272860Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 272732..272860 -
1690879675.348947-CDS-C-linearis_contig105:272731..2728601690879675.348947-CDS-C-linearis_contig105:272731..272860Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 272732..272860 -
1622927395.4647703-CDS-C-linearis_contig105:273794..2740941622927395.4647703-CDS-C-linearis_contig105:273794..274094Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 273795..274094 -
1690879675.3584192-CDS-C-linearis_contig105:273794..2740941690879675.3584192-CDS-C-linearis_contig105:273794..274094Chordaria linearis ClinC8C monoicousCDSC-linearis_contig105 273795..274094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig105.951.1prot_C-linearis_contig105.951.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig105 269873..274094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig105.951.1

>prot_C-linearis_contig105.951.1 ID=prot_C-linearis_contig105.951.1|Name=mRNA_C-linearis_contig105.951.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=325bp
MSFLLLLVFASRPAAVEGFAVIPHLAPFEVRSDAIPTHSSSSENPGGLRQ
ATAKSSRSSSSSSRRRSCMLFMGASRDDHTGRKDQWEGWDMEDNGTEEEA
VIDVKGRDWRLFRKNLINLYGEDNGKEPWGDGCWAHDIGTVEAGSLLIAT
EEIDSGTFHQSAILILSHGQDTGTLGLILNRPGPQRLHSLPGLQADLAEV
FGDSQVFDGGPMGLGTMTVLHDANVEGSDPILNGVYAGGFESLVEATRQG
RVSKDRVRFVHGHSAWSPGQLQGELDHNQWFVAAAAPELITELCDQPFNP
LWGKLLRLMGGRYREVAQRNEPRM*
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mRNA from alignment at C-linearis_contig105:268327..274203-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig105.951.1 ID=mRNA_C-linearis_contig105.951.1|Name=mRNA_C-linearis_contig105.951.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5877bp|location=Sequence derived from alignment at C-linearis_contig105:268327..274203- (Chordaria linearis ClinC8C monoicous)
CACTAGAATCAAAAGAGAGCTGGGTCAGTTTTCGCGTGGGAAGGTAGCCC
TCCCTTCGTCGACGGAGAGTGGGGGTCTAAGCCAGAGTCACGCGCAGCAT
TACCGAAGTATGTCTTTCCTCCTGCTGTTGGTATTTGCCTCGCGACCCGC
GGCAGTGGAAGGGTTCGCTGTGATCCCCCACTTAGCCCCATTCGAGGTCC
GCTCCGATGCCATCCCCACTCACAGCAGCAGCAGCGAGAACCCAGGGGGA
CTGAGACAGGCAACGGCAAAGAGCAGTCGCAGCAGCAGCAGCAGCAGCAG
GAGGAGGTCTTGCATGTTGTTCATGGGCGCCTCGAGAGACGACCACACGG
GCAGAAAGGATCAGTGGGAGGGATGGGACATGGAGGACAACGGCACCGAG
GAGGAGGCGGTGAGAAGTAGGCGCTGCGTGCGCGCGCATGCTCGGGGTTG
GCCGATGTCTACTTTGATCGAAGTTGTACCCGATAAGCTGTGTGTAGGTT
GAATGTGTCTGCCCGCACTTTTTGTTCCCTCTCCTGGTTGGTAGCCTTCT
CACGTCGACCTACGTATCGGAGGGTATCTTCGACGCTTGGGGAGGGAGAG
TGCACGCATGTCTGACGATAGATAGCCATCCATGCTTGGAAAAGGTCCGA
GCTGCTGAAAGGTGTTTGATGGCATCTGCAAACGTCGTGAGCGGCTTTTC
CCAGCTCTCATGATCGCGTCTCGCAAATTGAAAATTGCGCACCAGCTCTC
TGTCTCCCTTCTTCAATTTTTTATTTTTTCAGTTTTTCAGTTTTCCAGTT
TTCTTTTTCGGCGGATCCCCGAGATGATTGTCTTTCTACAAGGAGAAGTA
GTTAGCGGTGAACTCAGGGTGGATCAGATGGTTCGTCCCACTTTCCTCTT
CCCCCCGTTCTCATCCCCGAAAAATAGTGTCGATCAGGTTGCACTGCTGA
AAGGGCCAACCTGGGCGCGGGTTCGGGGTTGTTTGCTTTGCGAATGACCA
TGAGAGGGTTGGAGGGCGCCCCATGTGTGTGCGGCATGCCGATGTATGCG
GAACCCAAGCACCCGCCTTTCCCTTTCTGTGCTTAAGTAGTATTTGTAGC
CCAAAACGCTCCACGCCACTCTACCGTTGCTTCTAGCACATGTTGGCAGT
TCGTAGCATCCGTTTTCTCTTCTCACGCACACTTTTGCACACGAGAATCT
CTACACAGCACTGGTGATGCCAATTCGGTCCGCTACAAGCAGTAGTAGTG
CTCTCAGAGTGATGCTGGTGGTCTCGAGGCCAGAACCTACTTGTTTTGTG
CTCACACAAACGAATATCGGTAAAATGGTTTCCTTGGTTCCAGGTGATCG
ACGTGAAGGGCCGCGACTGGCGATTGTTCCGCAAGAACCTCATCAACCTG
TACGGTGAAGACAACGGCAAGGAACCCTGGGGCGACGGCTGCTGGGCGCA
CGACATAGGAACGGTAGAAGCGGTGAGACGCGTGCTTATGCCGTCTTCAA
GCCTTTGCTTGTGCTGCTGGTTGCATTGCATGAACAGCAAACGGCCCCGC
CGATGGTGCCTGGCAGCACCCGCGATTATGAGCCACGCACACCCTCACGT
ATTGCTCACCTCCCCCCACTCCCTACGATGCAACCAAGGGGCTGCTTCTT
CTACTCAACCTGACTCGCACGCATCTTGCCGCACCTATTTGCTGTCGCTA
GGCAAAGGCGATAAAAGTCCCACTTAACGACCCCCCCCCCCAAACCGCCA
TCCCAAAAACAGGGCTCCCTGCTGATTGCCACGGAGGAGATCGACAGCGG
CACGTTCCACCAGTCCGCCATCCTCATCCTCAGCCACGGCCAGGATACGG
GCACTTTGGGCTTAATCCTCAACAGGCCGGGACCGCAACGGCTGCACTCC
CTACCGGGCCTGCAGGCGGACTTGGCGGAAGTTTTCGGAGATTCTCAGGT
GTGTTTTTTGGGGGAGTTGTCACGTGTTGGTGCGAGGGGTTCGGCATGTG
TATGGTGGCAGGTGGGGTGTCGGCAGGCGGCTGAGTGCATTGCATATTTC
GCTAGTAGTAGAGACAGCGGTACGAAAAAATCACCAAGTACCACCTTTTT
TTCTTGTCCTTCACGTTTGTAGGTAGGAGCAGGCGAAGCGGTGGGGACGC
GTATTGAATGTCGGGATGTGGGGGTGGTGAAAAAATATACGAAGTATATG
TATACTTCGTATATACTCGAGTATATGGTTTGTTGTTGACCCGGCAGAGA
GTTGCAGAGGAGGTTAGGGTTCTCGGTTGTACCCTGTCTATTGTCTCTCT
CTTGTTGTTGATATTCATTTTTGAACCTTTGCCTGCCCTGTCTTCGCCTG
TCAGGTGTTTGATGGGGGGCCGATGGGACTTGGCACGATGACAGTGCTGC
ACGACGCGAACGTGGAGGGGAGCGACCCCATACTCAACGGCGTCTACGCC
GGTGGTTTCGAGTCTCTCGTAGAGGCGACCCGTCAGGTCATCTTTAGTGA
TGTTTCCTTCCCACACCCATGGCCCACGTATCCATGCTCTTGATTCCCAC
GGCCATGGCGCATTGACTCAAGTAGACGTTGCGCTACTGTACAACTTTCA
GCGCTAGATCTGTTGCGCGACTCGGAGCGATTGGCGGGTCATTCACGGAG
ATCCCCTGGCTTGTTTGTTACCTCCTGCGATTTCCCGTCCAGGGAGGAGT
GCTTGTCAGTTCGGCCTGCCTGTGTGCGGGCCTGAGAGAAGACTTTAACA
GCAGTACGCGAGTGCTTGAAAGCATTGAGGTGTCGAAGCATGGTGTCCGC
TTCGTCCGAAGGACATTGGCAGCAGCACCAGCCAGAGCAGAGCAATGAAA
ATTTTACCAAGACATTGCTGGCCACGATTTACGATTTACAAGCTCTCTTA
TCTATTGCTGGCACTTAGCTTAGACACGCGCCCCCACGCTGCACGCTGCA
CGCTCCGTCCATCCGGTACGACACGAAAATAATATTGACACAACAGGGGA
GGGTGTCGAAGGATCGGGTTCGCTTCGTTCACGGACACTCCGCCTGGTCC
CCGGGGCAGCTTCAGGGAGAGCTGGACCACAACCAGGCATGTTTACTGCT
GTAGACGATGGTGTTTCGCTTTGGCAGAGGGAGGAGGAGGGTACAATACA
ATTTGCGTTTTTTTTTTGTGCTCGCCGCGGGTAGGATTTTTTGGGGGAAG
TGGAGTCTCTTTGGCGGCGCGTTTAGTGGGATACCTCGCGCCTTTTATGC
CTGTTCCTGGCTGGCCAAAACAGCACAAAAACAGAGGTGCTGGTATGGTA
TGGTATGGTATGGTAAGGTAAGGTGTGGAGTAGTGCACCAGTTTGCCTAA
TGTTTTATCTTGTTTATCTTGTCCTCTTTTGTGCTTCGAGCTTTAGCTTT
TCTTCTCAATGTGCTGCCGCCGTTGGTATTTTGGTGCAGCTCTTGCCCCT
CGAGCCCCGTAGTTTGATCCTTATTGATACGGATACATGCAGCGTAGAAA
ACGAAGATATCGTGTTGGTATACTGTTGTAGCGTTTCCACAACTCTCAAG
CGGGGTCATGCAGCAGGCGTTGATGCGATTGCCCGCGGACGTGCGGGTTG
GTCGCCTGTCCGCTCTTCCCCCGCACTTTAGTATTCTCCAACGCCAACGA
TCTTGTGTTGCCTCTGAAATCTCGCTTTTGTGGTGTGGCCGCTCGTCTGA
CAGTGGTTCGTGGCTGCGGCAGCACCGGAGCTTATTACGGAGCTTTGCGA
TCAGCCCTTCAACCCGCTCTGGGGCAAGGTAAGCATTTTTTTCGTTCTCG
CGATTGTTGACGCATCAGAAGAGGCGTACTGCTGTAGTCTTTTTTTGCTT
CCTGTTGGGGACGCTTTTTACACGCACGGAGCCCCGCCTTGTTGCGTTTG
CGCGTTGTAGTTCTTGGCTTGCCGGTATAGAAGTGTTGTTTCCTCGTGGC
TAGCCCTGCCGTTTGTTGCAGCACCCTACAAGTACACCCCTGGCCCTGCT
GTTTTATTTTAGCGTATTGTACCTCGTATGTATGCTGTTGTTTTGAGTCG
CTGAGATACTGCTGTTTTATGTACCCTTTGCTTCTACGCGCAGTTGTTTA
CCGCGAGCTGACGGGGGGAAGCCAAAGGGTAGTCTTGAGCTTGAGGGTGG
TTTTGAAGGCCATCAACGCCTGAAAAGCTCTGTTCTTTCGTTTTCATCCC
TCGCCCATGTCCCGTTTATCCCGCGGCGTGTCTATGTTTATGTCCGTGGC
CGTTTTTTGTCGCCACAGTTGCTCCGCCTAATGGGGGGAAGGTATCGGGA
GGTCGCCCAGAGGAACGAACCAAGGATGTAACGGCTGCGTCGACAATGAC
AACGTCCTGTTCACCAGGACCCGAGATCGCGGACAAACAACGGGAAAAAA
CCAAAATCGGAAAATTAGTTGTTCTACGGTAAATACAAAGTGAAGGCAAA
ATCAAGCTGCTTTCAGGCCACGACTGGGTTGGATGGAGCTCGCCAGCAAG
AGAGCTAGAGCTCCCAACCGAGAGTGGATTGAATTTTTCCCGGAATATTT
CCAAGCAGCGAAGACCGGGGAAAGGCGGGGAGAACCTCCAGACGCGCGCG
GGCTGTTCAACACTTGGGGCGTCTCTGGACGTCTGTAGTTTGACCCCATC
CTCTAGCCTGCGACAAGGCGGTACTTCGGCGAAGTTGCCCTTGGTCTCTT
ATCTCGGAGGTTTTGGCACGCCTCTGGTCCATCTCGTTGTGTGTTCATTG
CCTTCGCGGCTAGACGTCGTGCCGTTTGCACAAAGCTCACGACATCGGAC
ACCGGTGGCAGGGGACCCCAAGACTTCGATGTGAGAGAGCTTGTCAAGCC
CTCCAAGCATAGGTCCATGGGCGCCTCGCCGAAATACCACCGTGGCGGTG
GTACGGGGGGCGGAGGGCGGGGGGCGGTCCCCATGTATACATGTAGATGT
GTGTTTGTGTGTGTGTTTTGTTTTTTTGCCGCAGTCTGCGCTCGAGAGGT
GTTGATGGTCCACCGAGCTTTTGCAGCTAAAATATCGGCAAAGCCTTGGG
ACAACTGCGGGTTGAAAAGGAAAAGCCGTGAAGGCCTACACTACAAGTAC
AGCAGTGCGCTCGACAATCTGAGAAAAAATACTAGCGGATTGTCAAGCAG
GTTTGTGGGGGGAGAGCTGCGTGGTGAGGAGGGGAGAAACCGTGGTGGCT
GGCGAGCCAACGCGCTTGACGGGATCTTTGGATGTGTGTGTTAAGGAACG
TTCCGGGGACAGCTCCAGAAGAACGGTCCGCGAAAACTAGGAAAGGCGGG
TGCTCGATAGGGGTGAAGCCCATGCTCGGATAAGCATTACTGGTCATTAG
GCCCATGCTTCGAGGTGATTAGGCCCATGCTTCGAGGTCATTAGGATATA
TTGAGGATCGAGGGATCCAGCATGAGCCGAGGGAGCTTAGGTGTCGGGTG
ATCCAGGATGGGGTTTGTCTTTCTCTCGCCTCGCACGGTATGTTTTGTGT
GGAGGGGTTGACGAGTGGTTGGGAGATTGGAGGTTTGGCTGTACAGTCGG
AGGAGGGGGAATCGTGATGGTTGGGGCGGCGGCGCGTCCTACGTCTGACT
TCTGAAGGATGGTGGTCGTCGTGTTGAGGTGGGGCGGCTCTTTTGTCTCT
TTGTTGTGGATGTCATGTCTCTGTCCATTTTGTTTGTTCTGTTGGGTTTC
AGGGTGTAGTGGATCTTGATGTTGTGCTTTGCAACGGGAACAGCTAACCG
TTGAGTCGTAGAGGCGAGAGGAAACCCTAACCCTAACCCTAACCCTAACC
CTAACGGAGTCACTGAAAAAAGGAGTAAGGGGCGCTCAAGGGAGTCGTTT
CGATGACGCAAGCTTTCTGATGCATAC
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Coding sequence (CDS) from alignment at C-linearis_contig105:268327..274203-

>mRNA_C-linearis_contig105.951.1 ID=mRNA_C-linearis_contig105.951.1|Name=mRNA_C-linearis_contig105.951.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at C-linearis_contig105:268327..274203- (Chordaria linearis ClinC8C monoicous)
ATGTCTTTCCTCCTGCTGTTGGTATTTGCCTCGCGACCCGCGGCAGTGGA
AGGGTTCGCTGTGATCCCCCACTTAGCCCCATTCGAGGTCCGCTCCGATG
CCATCCCCACTCACAGCAGCAGCAGCGAGAACCCAGGGGGACTGAGACAG
GCAACGGCAAAGAGCAGTCGCAGCAGCAGCAGCAGCAGCAGGAGGAGGTC
TTGCATGTTGTTCATGGGCGCCTCGAGAGACGACCACACGGGCAGAAAGG
ATCAGTGGGAGGGATGGGACATGGAGGACAACGGCACCGAGGAGGAGGCG
ATGTCTTTCCTCCTGCTGTTGGTATTTGCCTCGCGACCCGCGGCAGTGGA
AGGGTTCGCTGTGATCCCCCACTTAGCCCCATTCGAGGTCCGCTCCGATG
CCATCCCCACTCACAGCAGCAGCAGCGAGAACCCAGGGGGACTGAGACAG
GCAACGGCAAAGAGCAGTCGCAGCAGCAGCAGCAGCAGCAGGAGGAGGTC
TTGCATGTTGTTCATGGGCGCCTCGAGAGACGACCACACGGGCAGAAAGG
ATCAGTGGGAGGGATGGGACATGGAGGACAACGGCACCGAGGAGGAGGCG
GTGATCGACGTGAAGGGCCGCGACTGGCGATTGTTCCGCAAGAACCTCAT
CAACCTGTACGGTGAAGACAACGGCAAGGAACCCTGGGGCGACGGCTGCT
GGGCGCACGACATAGGAACGGTAGAAGCGGTGATCGACGTGAAGGGCCGC
GACTGGCGATTGTTCCGCAAGAACCTCATCAACCTGTACGGTGAAGACAA
CGGCAAGGAACCCTGGGGCGACGGCTGCTGGGCGCACGACATAGGAACGG
TAGAAGCGGGCTCCCTGCTGATTGCCACGGAGGAGATCGACAGCGGCACG
TTCCACCAGTCCGCCATCCTCATCCTCAGCCACGGCCAGGATACGGGCAC
TTTGGGCTTAATCCTCAACAGGCCGGGACCGCAACGGCTGCACTCCCTAC
CGGGCCTGCAGGCGGACTTGGCGGAAGTTTTCGGAGATTCTCAGGGCTCC
CTGCTGATTGCCACGGAGGAGATCGACAGCGGCACGTTCCACCAGTCCGC
CATCCTCATCCTCAGCCACGGCCAGGATACGGGCACTTTGGGCTTAATCC
TCAACAGGCCGGGACCGCAACGGCTGCACTCCCTACCGGGCCTGCAGGCG
GACTTGGCGGAAGTTTTCGGAGATTCTCAGGTGTTTGATGGGGGGCCGAT
GGGACTTGGCACGATGACAGTGCTGCACGACGCGAACGTGGAGGGGAGCG
ACCCCATACTCAACGGCGTCTACGCCGGTGGTTTCGAGTCTCTCGTAGAG
GCGACCCGTCAGGTGTTTGATGGGGGGCCGATGGGACTTGGCACGATGAC
AGTGCTGCACGACGCGAACGTGGAGGGGAGCGACCCCATACTCAACGGCG
TCTACGCCGGTGGTTTCGAGTCTCTCGTAGAGGCGACCCGTCAGGGGAGG
GTGTCGAAGGATCGGGTTCGCTTCGTTCACGGACACTCCGCCTGGTCCCC
GGGGCAGCTTCAGGGAGAGCTGGACCACAACCAGGGGAGGGTGTCGAAGG
ATCGGGTTCGCTTCGTTCACGGACACTCCGCCTGGTCCCCGGGGCAGCTT
CAGGGAGAGCTGGACCACAACCAGTGGTTCGTGGCTGCGGCAGCACCGGA
GCTTATTACGGAGCTTTGCGATCAGCCCTTCAACCCGCTCTGGGGCAAGT
GGTTCGTGGCTGCGGCAGCACCGGAGCTTATTACGGAGCTTTGCGATCAG
CCCTTCAACCCGCTCTGGGGCAAGTTGCTCCGCCTAATGGGGGGAAGGTA
TCGGGAGGTCGCCCAGAGGAACGAACCAAGGATGTAATTGCTCCGCCTAA
TGGGGGGAAGGTATCGGGAGGTCGCCCAGAGGAACGAACCAAGGATGTAA
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