mRNA_C-linearis_contig105.944.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig105.944.1 vs. uniprot
Match: D7G0U0_ECTSI (Beta-hydroxylase, aspartyl/asparaginyl family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0U0_ECTSI) HSP 1 Score: 398 bits (1023), Expect = 1.450e-129 Identity = 271/480 (56.46%), Postives = 299/480 (62.29%), Query Frame = 1 Query: 112 AFVAAPAHST--TAAWRPARIEGIRRPVPASPAQQGGGDEDE-----AYREDDQRRFWDTVVEVLTQELGTGDQ----LSRVWEFVRHHKNGDDPPAE-SPSYRATGLYFPGLEAKPWWD-RSEFPWLQDLEAAAPDVTLEMEALARAGGGTPYRGGSGEMSTVYDATQGWGTMRLRYMGRFGQPGINYSLLPRTLSALRRLPLAPETAAFQRQLPGTGLPLHVDPSNFVLGCHLGVVIPSPHGPVASDIARADGSGALGRERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTGLKGGHVGAGRGEEGGVEXXXXRSATRGSGAAAHGREGLGGXXXXXXXXXXXXXXXXXXXXXXXXXGVMKEVFVDKAGGNTAAATAVDTGNTSGDPPATGSGGVRGGIVGERAWIEVSGEKRHWQTGRAFVFDPSFLHRTNNPTAGERVILNVDVWHPGLSEIEKTAIRRVCEMVEQWNTRTGLF 1512 AFVA P +++W A PV + +Q G ++E Y DDQRRFWDTVV+VL ELG G+ LSRVW FV H++ G PPAE SPSYRATGLYFPGLEAKPWWD RSE WLQDLE AAPD+ EMEAL R+GG Y+GG+GEMSTVYDAT+GWGTMR+RYMGRFGQPG+NYSLLPRTL+ALRRLPLAPETAAFQRQL GTGLPLHVDPSNFVLGCH+GVV+P XXXXXXXXXXXXXXXXXXXXXXXXXXXXX AG E X A R SG GR+G G R GERAWIEVSGEKRHW+ GRAFVFDPSFLHRT NPT GERVILN+DVWHPGL E+EKTAIRRVCE+VEQWN+R+GLF Sbjct: 22 AFVAVPPXXXXXSSSWHTAERSCSLVPVQSVRQEQDAGVKEEXXXXGTYGGDDQRRFWDTVVKVLRSELGAGENQPEDLSRVWGFVAHNREGKAPPAEPSPSYRATGLYFPGLEAKPWWDDRSECSWLQDLEDAAPDIKREMEALQRSGGARSYKGGTGEMSTVYDATRGWGTMRIRYMGRFGQPGVNYSLLPRTLAALRRLPLAPETAAFQRQLAGTGLPLHVDPSNFVLGCHVGVVVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSTAE-------XXXAERRSGT---GRDG---------------------------------------------------------------GTERRERSGERAWIEVSGEKRHWEPGRAFVFDPSFLHRTYNPTDGERVILNIDVWHPGLKEVEKTAIRRVCELVEQWNSRSGLF 428
BLAST of mRNA_C-linearis_contig105.944.1 vs. uniprot
Match: A0A7S3ZCI2_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZCI2_9EUKA) HSP 1 Score: 77.4 bits (189), Expect = 2.580e-12 Identity = 48/132 (36.36%), Postives = 68/132 (51.52%), Query Frame = 1 Query: 400 YFPGLEA-KPWWDRSEFPWLQDLEAAAPDVTLEMEALARAGGGTPYRGGSGEMSTVYDATQGWGTMRLRYMGRFGQPGINYSLLPRTLSALRRLPLAPETAAFQRQLPGTGLPLHVDPSNFVLGCHLGVVIP 792 Y PG+ A P+ D SEF +++++E ++ E EAL A T T + GW T+ L Y G PG Y L P T L ++P+A A F RQ PG+G+P+H D +N L C +GV +P Sbjct: 21 YLPGIPAPSPFRDPSEFAFIKEIEQNIDEIRSEFEALVDANVTTAQF----RSVTSMNYKNGWKTLPLYYNGNT-IPGFPYHLCPVTAGILEKVPVAGRIAGFNRQQPGSGIPMHTDGNNMWLTCQVGVSVP 147
BLAST of mRNA_C-linearis_contig105.944.1 vs. uniprot
Match: A0A7S3WKR7_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WKR7_9SPIT) HSP 1 Score: 75.1 bits (183), Expect = 5.740e-12 Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 1 Query: 1285 GERAWIEVSGEKRHWQTGRAFVFDPSFLHRTNNPTAGERVILNVDVWHPGLSEIEKTAIRRVCEMVEQ 1488 GE +I V+G+K HW+ G VFDPSF H T NPT+ +R+ILN+D++HP L+++E IR + ++ Sbjct: 97 GETPYIWVAGDKYHWRDGEVMVFDPSFKHETFNPTSQDRIILNIDIFHPELTDLECDVIRETIRLKKE 164
BLAST of mRNA_C-linearis_contig105.944.1 vs. uniprot
Match: A0A0G4ENV9_VITBC (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ENV9_VITBC) HSP 1 Score: 76.3 bits (186), Expect = 2.020e-11 Identity = 33/66 (50.00%), Postives = 43/66 (65.15%), Query Frame = 1 Query: 1294 AWIEVSGEKRHWQTGRAFVFDPSFLHRTNNPTAGERVILNVDVWHPGLSEIEKTAIRRVCEMVEQW 1491 AWI V EKRHWQ GRA V+D +F H T NPT ER +L++D WH L+ E+ AI R+ + E + Sbjct: 231 AWIRVGAEKRHWQPGRALVYDTTFQHETFNPTDDERHVLHIDFWHKDLTAAERRAIERLYTLREMF 296
BLAST of mRNA_C-linearis_contig105.944.1 vs. uniprot
Match: A0A7S3AKA7_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AKA7_9EUKA) HSP 1 Score: 72.8 bits (177), Expect = 2.130e-11 Identity = 41/76 (53.95%), Postives = 47/76 (61.84%), Query Frame = 1 Query: 589 TMRLRYMGRFGQPGINYSLLPRTLSALRRLPLAPETAAFQRQLPGTGLPLHVDPSNFVLGCHLGVVIPSPHGPVAS 816 TM + Y G P P T++AL L LA ET AFQRQ PGTGLP HVDP ++VLGCHLGV P+ G V S Sbjct: 2 TMPIYYKGVL-HPEFPADECPATMAALSTLRLAGETVAFQRQSPGTGLPRHVDPCSWVLGCHLGVTCPNEGGEVGS 76
BLAST of mRNA_C-linearis_contig105.944.1 vs. uniprot
Match: R1CWD3_EMIHU (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CWD3_EMIHU) HSP 1 Score: 73.9 bits (180), Expect = 5.540e-11 Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1 Query: 1285 GERAWIEVSGEKRHWQTGRAFVFDPSFLHRTNNPTAGERVILNVDVWHPGLSEIE 1449 GE +I V+GEK HW+ G VFDPSF H T NPT+ +R+ILN+D++HP L+++E Sbjct: 155 GETPYISVAGEKYHWREGEVMVFDPSFKHETFNPTSQDRIILNIDLFHPELTDLE 209
BLAST of mRNA_C-linearis_contig105.944.1 vs. uniprot
Match: A0A7S0JKX7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JKX7_9EUKA) HSP 1 Score: 74.3 bits (181), Expect = 9.380e-11 Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = 1 Query: 1273 GGIVGERAWIEVSGEKRHWQTGRAFVFDPSFLHRTNNPTAGERVILNVDVWHPGLSEIEKTAIR 1464 GG VG +I V+G K HW+ G +FDPSF H T NPT+ ER+ILN+DV+HP L+++E AI+ Sbjct: 224 GGAVGS-PYIAVAGSKYHWRDGNVMLFDPSFRHETFNPTSQERIILNIDVFHPELTDLECEAIQ 286
BLAST of mRNA_C-linearis_contig105.944.1 vs. uniprot
Match: A0A7W7XG08_9ACTN (Aspartate beta-hydroxylase n=4 Tax=Streptomyces TaxID=1883 RepID=A0A7W7XG08_9ACTN) HSP 1 Score: 73.6 bits (179), Expect = 1.010e-10 Identity = 52/143 (36.36%), Postives = 68/143 (47.55%), Query Frame = 1 Query: 367 AESPSYRATGLYFPGLEAKPWWDRSEFPWLQDLEAAAPDVTLEMEALARAGGGTPYRGGSGEMSTVYDATQGWGTMRLRYMGRFGQP-GINYSLLPRTLSALRRLPLAPETAA--FQRQLPGTGLPLHVDPSNFVLGCHLGVV 786 AE + +YFPGL A+PWW R +FPWL +LEAAAP + E++AL GG S D G R Y+ G+P N S P TL L + A ++ F + GT + H SN L CHL +V Sbjct: 43 AEVGGLQTPEIYFPGLTARPWWSREDFPWLDELEAAAPAILEELQAL----GGNLDGAVSHPTGLAED-----GKWRALYLSCIGRPYAKNVSAFPNTLRTLSAIHGATDSGMTYFSTIMGGTHIRPHSGFSNAHLRCHLSLV 176
BLAST of mRNA_C-linearis_contig105.944.1 vs. uniprot
Match: A0A7S2XJQ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XJQ7_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.810e-10 Identity = 60/193 (31.09%), Postives = 83/193 (43.01%), Query Frame = 1 Query: 259 FWDTVVEVLTQELG--TGDQLSRVWEFVRHHKNGD-----------DPPAESPSYRATGLYFPGL-EAKPWWDRSEFPWLQDLEAAAPDVTLEMEALARAGGGTPYRGGSGEMSTVYDATQGWGTMRLRYMGRFGQPGINYSLLPRTLSALRRLPLAPETAAFQRQLPGTGLPLHVDPSNFVLGCHLGVVIPS 795 FW+ + ++ + T QL+RV V H + + DP A Y PGL +P+WD ++ P Q L+ + E +AL S Y A GW T+ L Y G P Y L P T L +PLA A F RQ PGTG+PLH D +N L C +G+ +P+ Sbjct: 66 FWELIPSLVASKFPSLTDAQLTRVAGMVEHAVSPNPQALLEDDFCNDPWRPQEDIHA---YMPGLGPTQPFWDPAQLPLCQALKDNHDIICQEYQALLLDNADADEDRFQSVTSMNYKA--GWKTLVLFYNGH-RIPEFPYHLCPTTTRLLETVPLAGRIAGFNRQQPGTGIPLHTDGNNMWLTCQMGISVPT 252
BLAST of mRNA_C-linearis_contig105.944.1 vs. uniprot
Match: UPI001C633D4F (aspartyl/asparaginyl beta-hydroxylase domain-containing protein n=1 Tax=Aquisediminimonas profunda TaxID=1550733 RepID=UPI001C633D4F) HSP 1 Score: 72.0 bits (175), Expect = 1.050e-9 Identity = 28/66 (42.42%), Postives = 42/66 (63.64%), Query Frame = 1 Query: 1279 IVGERAWIEVSGEKRHWQTGRAFVFDPSFLHRTNNPTAGERVILNVDVWHPGLSEIEKTAIRRVCE 1476 +V + W V E R W+ G+AFVFD + H NP++ RV+ +D+WHPGLS +E+ A+R + E Sbjct: 311 VVPQGCWFRVGAETRFWEAGKAFVFDDTIEHEAANPSSELRVVFIIDIWHPGLSPVEREAVRLLLE 376 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.944.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.944.1 >prot_C-linearis_contig105.944.1 ID=prot_C-linearis_contig105.944.1|Name=mRNA_C-linearis_contig105.944.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=493bp MPRLTAGEVFAVAAGAGFAGTRSLAFVAAPAHSTTAAWRPARIEGIRRPVback to top mRNA from alignment at C-linearis_contig105:163200..166232- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.944.1 ID=mRNA_C-linearis_contig105.944.1|Name=mRNA_C-linearis_contig105.944.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3033bp|location=Sequence derived from alignment at C-linearis_contig105:163200..166232- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:163200..166232- >mRNA_C-linearis_contig105.944.1 ID=mRNA_C-linearis_contig105.944.1|Name=mRNA_C-linearis_contig105.944.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2958bp|location=Sequence derived from alignment at C-linearis_contig105:163200..166232- (Chordaria linearis ClinC8C monoicous)back to top |