mRNA_C-linearis_contig105.940.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5KGJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ7_9PHAE) HSP 1 Score: 146 bits (369), Expect = 3.170e-44 Identity = 68/78 (87.18%), Postives = 70/78 (89.74%), Query Frame = -2 Query: 6 MGMAPYAGMLSKFALRNITISTQYVSMRLRFAVRRLPQPLKSRSICAAEAWFPNTCWATGARVGKWFLPLVPHQPSTS 239 MGM PYAGMLSKFAL NITIS YVS+RLRF V R+PQPLKSRSICAAEAWFPNTCWATGARVG WFLPLV HQPSTS Sbjct: 1 MGMTPYAGMLSKFALGNITISNPYVSVRLRFEVMRVPQPLKSRSICAAEAWFPNTCWATGARVGNWFLPLVAHQPSTS 78
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5KSA7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSA7_9PHAE) HSP 1 Score: 143 bits (360), Expect = 5.620e-42 Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 1 Query: 4 KDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279 +++L WW G+ FP LAPVAQQVFGNQA AAQ+ERDFSGC NLLT NRSRMDTYWVEMVMFL ANFE IP + IPMIA K++ +CLP R Sbjct: 28 REILPWWRQTGRKTFPYLAPVAQQVFGNQAGAAQVERDFSGCANLLTRNRSRMDTYWVEMVMFLHANFEHIPGFKDIPMIAAKDIHTCLPPR 119
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5JVT2_9PHAE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT2_9PHAE) HSP 1 Score: 137 bits (344), Expect = 1.320e-38 Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1 Query: 4 KDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279 ++VL WW G+ FP LAPVAQQV GNQA AAQ+ERDFS C NLLT NRSR+DTYWVEMVMFL N++ IPA+ IPMIA K++R+CLP R Sbjct: 103 REVLPWWRNTGRKMFPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPR 194
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5JZQ5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ5_9PHAE) HSP 1 Score: 137 bits (346), Expect = 6.230e-38 Identity = 64/92 (69.57%), Postives = 72/92 (78.26%), Query Frame = 1 Query: 4 KDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279 ++VL WW GKN FP LAPVAQQVFGNQA+ +Q+ERDFSG G LL NRSRMDTYWVE+VMFL ANF IP IPM+A KN+RSCLP R Sbjct: 190 REVLPWWKRTGKNIFPHLAPVAQQVFGNQAAVSQVERDFSGVGILLAPNRSRMDTYWVEIVMFLNANFAHIPPLKQIPMVAAKNIRSCLPAR 281
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE) HSP 1 Score: 137 bits (345), Expect = 6.470e-36 Identity = 62/92 (67.39%), Postives = 73/92 (79.35%), Query Frame = 1 Query: 4 KDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279 ++VL WW G+ FP LAPVAQQV GNQA AAQ+ERDFS C NLLT NRSR+DTYWVEMVMFL N++ IPA+ IPMIA K++R+CLP R Sbjct: 501 REVLPWWRNTGRKMFPCLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPR 592
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5KP16_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP16_9PHAE) HSP 1 Score: 122 bits (306), Expect = 2.790e-34 Identity = 57/78 (73.08%), Postives = 65/78 (83.33%), Query Frame = 1 Query: 46 FPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279 FP LAPVAQQV GNQA AAQ+ERDFS C NLLT NRSR+DTYWVEMVMFL N++ IPA+ IPMIA K++R+CLP R Sbjct: 2 FPYLAPVAQQVLGNQAGAAQVERDFSSCANLLTRNRSRIDTYWVEMVMFLHVNYKRIPAFKDIPMIAAKDIRTCLPPR 79
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE) HSP 1 Score: 122 bits (305), Expect = 2.980e-30 Identity = 55/93 (59.14%), Postives = 67/93 (72.04%), Query Frame = 1 Query: 1 PKDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279 P +VL +W T G++ FP L VAQQ FG+Q SAA +ERDFSGCG L NRSR++ YWVEMVMFL ANF+ IP Y IP I K++R CLP + Sbjct: 729 PTEVLSYWATTGRHSFPALKHVAQQTFGSQPSAAPVERDFSGCGLFLVPNRSRVEEYWVEMVMFLNANFKFIPKYDNIPSIDSKDIRKCLPAK 821
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5K8W6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W6_9PHAE) HSP 1 Score: 120 bits (301), Expect = 4.590e-30 Identity = 57/91 (62.64%), Postives = 67/91 (73.63%), Query Frame = 1 Query: 7 DVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279 +VL +WG GK+ FP+L VAQQ FGNQASAA +ERDFSGCG + NRSR+D YWVEMVMFLKANF S IP I PK++R CLP + Sbjct: 389 EVLSYWGRTGKHAFPSLKHVAQQTFGNQASAAPVERDFSGCGLFMVPNRSRVDEYWVEMVMFLKANFNSSRRIN-IPQIDPKDIRKCLPAK 478
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE) HSP 1 Score: 118 bits (296), Expect = 3.930e-29 Identity = 56/93 (60.22%), Postives = 65/93 (69.89%), Query Frame = 1 Query: 1 PKDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279 P DVL +W GK FP+L VAQQ FG+QASAAQIERDFS CG T NRSR + YW+EMVM LK N+E IP Y IP I K++R CLP + Sbjct: 489 PSDVLAYWNKVGKQMFPSLKYVAQQTFGSQASAAQIERDFSHCGLFSTGNRSRAEEYWLEMVMVLKGNYELIPDYKDIPSIDSKDIRKCLPAK 581
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Match: A0A6H5KFQ8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ8_9PHAE) HSP 1 Score: 114 bits (286), Expect = 6.040e-28 Identity = 54/93 (58.06%), Postives = 68/93 (73.12%), Query Frame = 1 Query: 1 PKDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANRSRMDTYWVEMVMFLKANFESIPAYGAIPMIAPKNVRSCLPGR 279 P+DVL +W G++ FP L VAQQ FG+QA AAQIERDFS G L +NR+R+D YWVEMV+FLKANF+ IP Y IP + K++R CLP + Sbjct: 384 PRDVLNYWKQSGRHAFPALNYVAQQRFGSQAYAAQIERDFSTGGLLGASNRNRLDEYWVEMVLFLKANFQCIPGYDDIPNMDSKSIRECLPAK 476 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.940.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.940.1 >prot_C-linearis_contig105.940.1 ID=prot_C-linearis_contig105.940.1|Name=mRNA_C-linearis_contig105.940.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=93bp PKDVLGWWGTKGKNHFPTLAPVAQQVFGNQASAAQIERDFSGCGNLLTANback to top mRNA from alignment at C-linearis_contig105:135879..136157- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.940.1 ID=mRNA_C-linearis_contig105.940.1|Name=mRNA_C-linearis_contig105.940.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at C-linearis_contig105:135879..136157- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:135879..136157- >mRNA_C-linearis_contig105.940.1 ID=mRNA_C-linearis_contig105.940.1|Name=mRNA_C-linearis_contig105.940.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at C-linearis_contig105:135879..136157- (Chordaria linearis ClinC8C monoicous)back to top |