mRNA_C-linearis_contig105.924.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5JN38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN38_9PHAE) HSP 1 Score: 331 bits (849), Expect = 2.860e-106 Identity = 220/466 (47.21%), Postives = 259/466 (55.58%), Query Frame = 1 Query: 1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGVKGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQGCGWRRQLTSPSYW*SDSRSFERTEEIFSRAARLRRNDPEGGRACT-FHDELWNG---GKRLLLGDDRALAKMDGHAPASPLQHGEVGL--QFVLREQVGGFGGGFRTRCRPGVCAGFAAGALA*AVRGRGVEVVGGGTHVSRSVGG*PFGSNYHPGKR*ADTWHVFEVECECWVQGGVGEVCLICAREEGCNRRAWREPDSEGLGL*NDLEFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLR 1380 FMGPLGKGSWHEWED+HLVALL TLWYN SRSDSSCISWRR +NL+ KGV W+CKFIRPAETRWMV+ DAAALLEERWD +S MLDDPL+RVHAKF VALRK VLSWAYNWIRGEGGYF++GTGGVAERLP G R + + + ER++ + RL AC+ F++ W G G +G + A A + P G Q RE + G+ + AA A R +E H + V V +V+ E + P G + FPQLYEWACHA++FAPIHQQLVES STYDT TQKHDSRE+DIVRLGQF SR SRRVER +++N E+R GD+AI VA LKK+ASHAVPNERQLR Sbjct: 6 FMGPLGKGSWHEWEDNHLVALLATLWYNISRSDSSCISWRRVKNLVFRAKGVMWICKFIRPAETRWMVIRDAAALLEERWD------------------------ESTYMLDDPLIRVHAKFCVALRKAVLSWAYNWIRGEGGYFLEGTGGVAERLPPGM---RLAEAADFSLLLVKRLERSQRMSM--TRL---------ACSSFYEGKWAGSEEGFEHAVGQEVARALLLAFWPNRYESTEWKGWEEQNTFRE----------NKLTLGMFSKLAASAE---FREE-LERYAASAHEKKKV--------------------VSDVDVEN------------------------QTPRVSGFDM--IWTFPQLYEWACHAVFFAPIHQQLVESSSSTYDTGTQKHDSRELDIVRLGQFSSRGSRRVERLDSSNQEIRDEGDKAIAVATVLKKSASHAVPNERQLR 373
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5JU73_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU73_9PHAE) HSP 1 Score: 333 bits (854), Expect = 5.580e-103 Identity = 227/476 (47.69%), Postives = 277/476 (58.19%), Query Frame = 1 Query: 91 RSDSSCISWRRFQNLIEGVKGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQGCGW--------------RRQLTSPSYW*SDSRSF-ERT---EEIFSRAAR-LRRNDPEGGRAC----------TFHDELWNGGKRLLLGDDRALAKMDGHAPASPLQ-------HGE-VGLQFVLREQVGGFGGGFRTRCRPGVCAGFAAGALA*AVRGRGVEVVGGGT-HVSRSVGG*PFGSNYHPGKR*ADTWHVF-EVECECWVQGGVGEVCLICAREEGCNRRAWREPDSEGL-----GL*NDLEFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKR 1386 RSDSSCISW RFQNL+ G KGV W CKFIRPAETRWMVVWDAAALLE+RWD VRWLH++WAA+KLLGTPFMDYW+KSLCMLDDPL+RVHAKF VALRKVVLSWAYNWIRGEGGY ++G GGVAERLP G P + D ++ E+T EE+ + AA+ L DP C F +E +G R ++ M H P S + G+ G + + VG + R + A + G E VG H + ++ T+ +F ++ +G V E + ARE+ + + D+E G FP LYEWA HAI FAPIHQQLV+SV STYDTCTQKHDSREI IVRLGQFRS QSRRV+R +ATN E+R+AGD+ I VAR LKK+A+ A+PN+ QLRKR Sbjct: 285 RSDSSCISWERFQNLVFGCKGVKWGCKFIRPAETRWMVVWDAAALLEDRWDEVRWLHLEWAAAKLLGTPFMDYWFKSLCMLDDPLIRVHAKFCVALRKVVLSWAYNWIRGEGGYLLEGRGGVAERLPAGMRLADIADFSLLLVERLEELRMHPKKYFPDLLAWAEKTLSEEEVSANAAQTLLLFDPVP--YCPMLQLAHFMRNFQNEK-SGLFREMIARWTKWMDMHQHLPYSMARLACSSFFEGKWAGSEKAIEHAVG------QEYARASLLALWPE-------LNEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEV-ERYSLSAREK---KEIVVDDDAESQAPRVSGFDMIWSFPLLYEWARHAILFAPIHQQLVKSVCSTYDTCTQKHDSREIGIVRLGQFRSSQSRRVQRLHATNKEIREAGDKVIAVARELKKSAAQAIPNDWQLRKR 740
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5JI13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI13_9PHAE) HSP 1 Score: 224 bits (571), Expect = 1.600e-64 Identity = 159/471 (33.76%), Postives = 227/471 (48.20%), Query Frame = 1 Query: 1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQGCGWRRQLTSPSYW*SDSRSFERTEEIFSRAA--RLRRNDPEGGRACTFHDELWNGGKRLLLGDDRALAKMDGHAPASPLQHGEVGL-QFVLREQVGGFGGGFRTRCRPGVCAGFAAGALA*AVRG--RGVEVVGGGTHVSRSVGG*PFGSNYHPGKR*ADTWHVFEV---------ECECWVQGGVGEVCLICAREEGCNRRAWREPDSEGLGL*NDLEFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPN 1365 FMGPLGKGSWHEWE H+ +LLG +WYNTSRS+ S S++R++ ++ W+ KFIRPAETRWMVV D A LL ERW+ V WL ++AA L T F +YW +S CML DPL+RVH F+ L +++ WAYNWI G+GG+F+KG G V RL + + + + A R+R + R +F EL G + R + M H PL +G F R + G GG P F A G R T +++ +GG ++ T +F E E + G G+ + + +G + A + P LY CH YF PIHQQL+E+ FS YD+C +K D E+D+VR+G ++S +SR + +A + ++R AG + ++ A K + PN Sbjct: 6 FMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSEPSNASFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRLFPAMRLVEAADFSCLLLQKLETIRKDPQTYVAALLDRVRTTLSDPMRGESFRVELQRGQFFIAEFKKRWIKSMQRHQEL-PLSMARIGCPSFYARTGIMG-GGAVEQAVGPEFARAFPHVAWPGLYEGEPRTERERQYRTQLAKDLGG-----TTEARRKDELTLGLFSCIDGDLSVRSELEQYANSGWGDKEIDESAPKGTSALA------------RLFDLPLLYRLVCHRFYFVPIHQQLIEAFFSKYDSCAKKTDMAEMDVVRVGGWKSAESRDIVCVDAIDDQIRGAGKKVLKEATEAKAISHARKPN 456
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5JSZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ3_9PHAE) HSP 1 Score: 215 bits (547), Expect = 2.290e-63 Identity = 105/148 (70.95%), Postives = 121/148 (81.76%), Query Frame = 2 Query: 659 MIERWLKWMDMHQHLPYSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKR-VVIDVLGENQTARVSGFEMIWNFP 1099 MI RW WMDMHQHLPYSMARLACSSF+E KW GSE+AFEHAVGQE+ARA LL LWPELYE AEW W+EEH +LE+L DL EA TT+ KD+LT GMFSKL+ASA FR E+E+YA SA EK+ +V+D ENQ RVSGF+MIW+FP Sbjct: 1 MIARWTIWMDMHQHLPYSMARLACSSFFEGKWAGSEKAFEHAVGQEYARASLLALWPELYEGAEWVGWDEEHEYLEILRDDLSEAETTEEKDELTFGMFSKLNASAEFRGEVERYALSAREKKEIVVDDDAENQAPRVSGFDMIWSFP 148
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: D7FIQ1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ1_ECTSI) HSP 1 Score: 222 bits (565), Expect = 2.780e-63 Identity = 167/488 (34.22%), Postives = 233/488 (47.75%), Query Frame = 1 Query: 1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQGCGW-------RRQLTSPSYW*SDSRSF-----ERTEEIFSRAARLRRNDPEGGRACTFHDELWNGGKRLLLGDDRALAKMDGHAPASPLQHGEVGL-QFVLREQVGGFGGGFRTRCRPGVCAGFAAGALA*AVRGRG---------VEVVG--GGTHVSRSVGG*PFGSNYHPGKR*ADTWHVFEVECECWVQGGVGEVCLICAREEGCNRRAWREPDSEGLGL*NDLEFPQLYEWACHAIYFAPIHQQLVESVFSTYDTCTQKHDSREIDIVRLGQFRSRQSRRVERSNATNAEVRKAGDEAIEVARALKKTASHAVPNERQLRKR 1386 FMGPLGKGSWHEWE H+ +LLG +WYNTSRS+SS +++R++ +++ W+ KF+RPAETRWMVV D A LL +RW+ V WL ++AA L T F +YW +S ML DPL+RVH F+ L +++ WAYNWIRG+GG+F+KG G V +L G R L D +++ ER + S A A F R + M+ H PL +G F R + G G P F A + G ++V GGT +R FG D+ E E + G G+ + +G + A +FP LY+ CH YF PIHQQL+E+ FS +D+C QK D E+DIVR+G ++S +SR + ++AT ++R AG + +E AR K + P E RKR Sbjct: 6 FMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSESSNANFQRWKRVVQQQFPDAKPWLIKFVRPAETRWMVVMDGAKLLCKRWEQVEWLFCEYAARNLNKTTFRNYWLQSAYMLRDPLVRVHVMFTARLGELLFDWAYNWIRGKGGFFLKGEG-VGRQLFPGMRLVEVADFSRLLLVKLETIRKDPKTYFAAVLERVQTTLSEAM-----------AKLFMTNFSEDKGFFAEFKQRWIKWMERHQQL-PLSMARIGCPSFFARTGIMGEGA-VEQAVGPEFARAFLHVAWSALYEGEPRTEREREYRTQLVKDLGGTTDARRKDELTFGLFSR-----IDSDRSVRNELEQYANSGWGDKEVDQGAPKGTSALA------------RLFDFPLLYKLVCHRFYFVPIHQQLIEAFFSKFDSCAQKTDMAEMDIVRVGGWKSAESRDIVCADATGEKIRAAGKKVLEKAREAKAVSHARKPAENLSRKR 462
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5KSR2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSR2_9PHAE) HSP 1 Score: 182 bits (463), Expect = 2.870e-52 Identity = 87/158 (55.06%), Postives = 111/158 (70.25%), Query Frame = 1 Query: 1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERL 468 FMGPLGKGSWHEWE H+ +LLG +WYNTSRS SS +++R++ ++ W+ KFIRPAETRWMVV D A LL ERW+ V WL ++AA L T F +YW +S CML DPL+RVH F+ L +++ WAYNWI G+GG+F+KG G V RL Sbjct: 6 FMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGNFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRL 162
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5JW26_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW26_9PHAE) HSP 1 Score: 183 bits (465), Expect = 9.250e-52 Identity = 88/161 (54.66%), Postives = 111/161 (68.94%), Query Frame = 1 Query: 1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQG 477 FMGPLGKGSWHEWE H+ +LLG +WYNTSRS SS ++R++ ++ W+ KFIRPAETRWMVV D A LL ERW+ V WL ++AA L T F +YW +S CML DPL+RVH F+ L +++ WAYNWI G+GG+F+KG G V RL G Sbjct: 6 FMGPLGKGSWHEWERDHVFSLLGMVWYNTSRSGSSNGKFQRWKRVVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRLSPG 165
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5KH75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH75_9PHAE) HSP 1 Score: 159 bits (401), Expect = 2.630e-39 Identity = 89/224 (39.73%), Postives = 115/224 (51.34%), Query Frame = 1 Query: 1 FMGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGV--KGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKL------------------------------LG---------------------------------TPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERLPQG 477 FMGPLGKGSWHEWE H+ +LLG +WYNTSRS+SS +++R++ ++ W+ KFIRPAETRWMVV D A LL ERW+ V WL ++AA L LG T + +YW +S CML DPL+RVH F+ L +++ WAYNWI G+GG+F+KG G V RL G Sbjct: 6 FMGPLGKGSWHEWERDHIFSLLGMVWYNTSRSESSNANFQRWKRIVAAQFPNAKPWLIKFIRPAETRWMVVMDGAKLLCERWEQVEWLFCEYAARNLNKTTFRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAAKGSXCERWEQVEWLFCEYAAGNLNKTTYRNYWVQSACMLRDPLVRVHVMFTARLGELLFDWAYNWIHGKGGFFLKGEG-VGRRLSPG 228
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: D7FXZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ1_ECTSI) HSP 1 Score: 152 bits (383), Expect = 5.430e-39 Identity = 79/142 (55.63%), Postives = 100/142 (70.42%), Query Frame = 2 Query: 683 MDMHQHLP-YSMARLACSSFYESKWVGSEEAFEHAVGQEFARALLLVLWPELYEDAEWRSWEEEHTFLEVLEGDLLEATTTQAKDKLTLGMFSKLSASAGFREELEKYASSAHEKRVVI--DVLGENQTARVSGFEMIWNFP 1099 MD H P +++ YE KW G+++A EHAVG+EFARALL+ LWPE E AEWR W+EEH L +LEGDL EATT KDKLT GM+++L+ SA FR+E+E YA+SAHEK+ V+ D+ +N RVS F MIWNFP Sbjct: 1 MDRHASAPPLQHGQVSLQLLYEGKWAGADKANEHAVGKEFARALLVALWPEKNESAEWREWQEEHDILGILEGDLSEATTPGEKDKLTFGMYTELNESAEFRKEVEVYAASAHEKKEVVSDDLDVDNPPPRVSAFGMIWNFP 142
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Match: A0A6H5KE81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE81_9PHAE) HSP 1 Score: 135 bits (341), Expect = 1.660e-33 Identity = 69/134 (51.49%), Postives = 87/134 (64.93%), Query Frame = 1 Query: 73 LWYNTSRSDSSCISWRRFQNLI--EGVKGVTWVCKFIRPAETRWMVVWDAAALLEERWDAVRWLHMDWAASKLLGTPFMDYWYKSLCMLDDPLMRVHAKFSVALRKVVLSWAYNWIRGEGGYFVKGTGGVAERL 468 +WYNTSRS+SS ++ R+Q L+ E W KFI+PAETRWMVV D A +L ERWD V WL +WAA + T + +YW KS L DPLM V F+ L ++V WAYNWIRG+GG+F+K GV RL Sbjct: 2 VWYNTSRSNSSNTNFLRWQKLVADEFPAAKPWTKKFIKPAETRWMVVMDGAKILFERWDEVAWLFGEWAACNIGKTTYRNYWLKSAVALQDPLMLVQVMFAARLGELVFDWAYNWIRGKGGFFLK-CEGVGRRL 134 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig105.924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig105.924.1 >prot_C-linearis_contig105.924.1 ID=prot_C-linearis_contig105.924.1|Name=mRNA_C-linearis_contig105.924.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=172bp MGPLGKGSWHEWEDHHLVALLGTLWYNTSRSDSSCISWRRFQNLIEGVKGback to top mRNA from alignment at C-linearis_contig105:12911..14617+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig105.924.1 ID=mRNA_C-linearis_contig105.924.1|Name=mRNA_C-linearis_contig105.924.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1707bp|location=Sequence derived from alignment at C-linearis_contig105:12911..14617+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig105:12911..14617+ >mRNA_C-linearis_contig105.924.1 ID=mRNA_C-linearis_contig105.924.1|Name=mRNA_C-linearis_contig105.924.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at C-linearis_contig105:12911..14617+ (Chordaria linearis ClinC8C monoicous)back to top |