mRNA_C-linearis_contig104.920.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig104.920.1 vs. uniprot
Match: D8LE98_ECTSI (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE98_ECTSI) HSP 1 Score: 1262 bits (3265), Expect = 0.000e+0 Identity = 703/841 (83.59%), Postives = 748/841 (88.94%), Query Frame = 1 Query: 316 MTSQRSTTLAVLGLLAGFVNVDAFRLIPASPGAVSSSLARAQQQSAVASRGASTRRTWRSAHGLTMSSP--AVGNDLPATEELED-KPSRDSVMDELDAILGDVKMDSTAKPASSA-KNTAAVLGQDLDSLLGAPGAPPSAAATPATKQNSDVGDLNLDDLLGPGANSAPPQRYSGGGTAXXXXXXXAPPASRAQPA--------QGWGSPTDGQAPPPQQRMSYSGEFGAASGRYGDMATAAASKVLKGDQLVSLVEVGDEGACPVEEKDVDPKTVAALKARGIENFTPVQAITYDHVLTGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHKERTYQRGRSPRFLVVCPTRELARQVYTELDTLGRGFGLKADVFHGGSAYGPQMKSLSDGLDILVATPGRVMDHLQKGALSLADVRHAVLDEADEMLNMGFADDIETIFSYVNVQECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKNVNKLATTVKHLSIEVSARHRSSMLEDIITYYGKGSHAIVFTNSKAECDDLSDGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDEMLEFFRESAKELLEEEESGDKELLLAKCLAAIARKTHVTRRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEPMVGKIAVAKDPTTAVFDMATDAADQLIKFSKEQNLESIEFSMCPVLPLLQEVPGGGRFGGGXXXXXXXXXXXXXXXXXXXXXXRSSYG 2802 MTS+ ST LAVLGLLAGFVNVDAF LIPA+PGAVSSS+ RA+ +AVAS R TWR+ HGL+MSS AV N AT E++D KP R SVMDELDAILGDV+ DS KPAS AA L QDLDSLLG+ + P A AT A +NS + DL+LDDLLGPGANSAPPQRYSGGGTA P A R P Q WG+P GQ QQRMSYSGEFGAASG+YGD A ASK LKGDQ+VSLVEVG+EGACPVEEKDVDPKTVAALKARGIE FTPVQAITYDH+L+GRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDH++RTYQRGRSPRFLVVCPTRELARQVY EL+TLG FGLKADVFHGG+AYGPQM+SLSDGLDILVATPGR+MDHLQ+GAL L+DVRHAVLDEADEMLNMGFADDIETIFSYV+V+ECQVLLFSATVPSWVRNIANKYTANPLTVDAVGK+VNKLATTVKHLSIEVS+RHRSSMLEDIITYYGKGSHAIVFTNSKAECD+L+DGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSD+M++FFRESA+ELL EEES DKELLLAKCLAAIARKTHVTRRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEPMVG+IA+AKDPTTAVFDM+T+AADQL+KFSKEQNLESIEF MCPVLP+LQE PGG RFGGG XXXXXXXXXXXXXXXXX RSSYG Sbjct: 1 MTSRSSTALAVLGLLAGFVNVDAFSLIPAAPGAVSSSVTRAK--TAVASLEPPARNTWRARHGLSMSSTSSAVENAGAATGEVDDSKPPRASVMDELDAILGDVQQDSGTKPASGGGMGAAAPLDQDLDSLLGSATSAPPATATVAAPKNSGLDDLDLDDLLGPGANSAPPQRYSGGGTAEGGGSF--PAAGRGPPVGGASSDGQQAWGAP--GQQ---QQRMSYSGEFGAASGKYGDTAARTASKELKGDQMVSLVEVGEEGACPVEEKDVDPKTVAALKARGIEKFTPVQAITYDHILSGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHQQRTYQRGRSPRFLVVCPTRELARQVYGELETLGSTFGLKADVFHGGAAYGPQMRSLSDGLDILVATPGRIMDHLQRGALDLSDVRHAVLDEADEMLNMGFADDIETIFSYVDVKECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKHVNKLATTVKHLSIEVSSRHRSSMLEDIITYYGKGSHAIVFTNSKAECDELADGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDDMVDFFRESAQELLAEEESEDKELLLAKCLAAIARKTHVTRRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEPMVGRIAIAKDPTTAVFDMSTEAADQLVKFSKEQNLESIEFKMCPVLPVLQEAPGG-RFGGGRXXXXXXXXXXXXXXXXXYRGNRSSYG 831
BLAST of mRNA_C-linearis_contig104.920.1 vs. uniprot
Match: A0A836CKS6_9STRA (RNA helicase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS6_9STRA) HSP 1 Score: 618 bits (1593), Expect = 1.520e-200 Identity = 325/549 (59.20%), Postives = 409/549 (74.50%), Query Frame = 1 Query: 1090 DVDPKTVAALKARGIENFTPVQAITYDHVLTGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHKERTYQRGRSPRFLVVCPTRELARQVYT----ELDTLGRGFGLKADVFHGGSAYGPQMKSLSDGLDILVATPGRVMDHLQKGALSLADVRHAVLDEADEMLNMGFADDIETIFSYVNVQECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKNVNKLATTVKHLSIEVSARHRSSMLEDIITYYGKGSHAIVFTNSKAECDDLSDGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDEMLEFFRESAKELLEEEESG----DKELLLAKCLAAIARKTHVTRRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGF-EPMVGKIAVAKDPTTAVFDMATDAADQLIKFSKEQNLESIEFSMCPVLPLLQEVPGGGR 2709 +V T+ L +GI +FTPVQA+TY+H+L GRD+I KSRTGTGKTIAFGLPVIQHL RFA+D R+ +R +P + T LA Y+ EL L + G+ + F+GG++YGPQ +L G+D++V TPGR++DH+QKG L L++++HAVLDEADEMLNMGFAD IE +F+ VN+ ECQVLLFSATVP WVR I+ Y NPL VDAVG N+LATTVKHL+IE +R+R+ MLED+I YGKGS AIVFT +K ECD+L+ G FKTL+SQVLHGDI Q+QR+ TI FR FQVLVATDVAARGID+S+IDLVVQYRPP DPD+YVHRSGRTGRAGR G VTL+A+NE RD++KIE+ +G+GF+FER AVPSA QVM +AG VA + + VS +++ FF +A+ELL E ++ D E LLA+CLAAIARKT + +RS+LTGEPD TVQMVA + +T+GDV FAV KL RA G P +GKIA+ KD TAVFDM AA LI + +Q L++I+F++C LP L GGR Sbjct: 57 EVIQSTIDVLLGKGITHFTPVQAVTYEHILAGRDMIAKSRTGTGKTIAFGLPVIQHLARFADDADSRSSKRYAAP----LMRTYHLATNTYSKVADELAQLAQPHGMSVECFYGGASYGPQESALRRGVDVVVGTPGRLIDHVQKGNLDLSELKHAVLDEADEMLNMGFADAIEELFARVNIPECQVLLFSATVPDWVRRISAAYLKNPLQVDAVGTTDNRLATTVKHLAIETPSRNRAHMLEDVIAVYGKGSRAIVFTQTKRECDELAAGNAFKTLSSQVLHGDIGQNQREVTIGQFRKGQFQVLVATDVAARGIDISEIDLVVQYRPPTDPDTYVHRSGRTGRAGRLGTCVTLFADNERRDVQKIEKAIGKGFKFERAAVPSATQVMEVAGKVALKALDTVSADVVPFFTPAARELLAESQADGAELDTEQLLARCLAAIARKTEIQQRSILTGEPDMATVQMVAHQPMTTGDVTFAVNKLARAGGGPSPNIGKIAIGKDAHTAVFDMTQAAAAALIDVANDQELKAIKFTLCTELPELSTQEYGGR 601
BLAST of mRNA_C-linearis_contig104.920.1 vs. uniprot
Match: A0A835ZP19_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP19_9STRA) HSP 1 Score: 531 bits (1367), Expect = 1.120e-165 Identity = 286/486 (58.85%), Postives = 344/486 (70.78%), Query Frame = 1 Query: 1075 PVEEKDVDPKTVAALKARGIENFTPVQAITYDHVLTGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHKERTYQRGRSPRFLVVCPTRELARQVYTELDTLGRGFGLKADVFHGGSAYGPQMKSLSDGLDILVATPGRVMDHLQKGALSLADVRHAVLDEADEMLNMGFADDIETIFSYVNVQECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKNVNKLATTVKHLSIEVSARHRSSMLEDIITYYGKGSHAIVFTNSKAECDDLSDGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDEMLEFFRESAKELLEEE---ESG-DKELLLAKCLAAIARKTHVTRRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGR 2520 PV+ KDVD KTV L+++GIE FTPVQ++TY+H+L GRDI+ +SRTGTGKTIAFGLPVIQHLGRFA+D RT RGR PRFLVVCPTRELA+QV EL L R L+ + F+GGS+YGPQ +L GLDI+V TPGR++DH+ KG L L++++HAVLDEADEMLNMGFADDIE IFS V++ CQVLLFSATVP WV+ I+ Y NPL+ A+ K T+++ C T QVLHGDI Q+QR+ TI FR FQVLVATDVAARGID+S+IDLVVQYRPP DPD+YVHRSGRTGRAGR GV VTLYA+NE RD++KIE+ VG+GF+FER VPS QVM +AGTVA + + VS+E++ FF +AKEL+ E E G D E LLA+CLAAIARKT + +RSMLTGEPD TVQ+ A R LT+GDVMFAV KL R Sbjct: 148 PVDSKDVDDKTVEILRSKGIEFFTPVQSVTYEHILGGRDIVARSRTGTGKTIAFGLPVIQHLGRFADDADTRTNTRGRRPRFLVVCPTRELAKQVADELSQLARPHNLQVECFYGGSSYGPQESALRRGLDIVVGTPGRLIDHINKGNLDLSELKHAVLDEADEMLNMGFADDIEEIFSKVDIPACQVLLFSATVPDWVKRISAAYLKNPLSFIALLK-----------------------------------------THNRPSC----------TYAVQVLHGDIGQNQREVTIGQFRKSQFQVLVATDVAARGIDISEIDLVVQYRPPTDPDTYVHRSGRTGRAGRSGVCVTLYADNERRDMQKIERAVGKGFKFERAPVPSPAQVMEVAGTVALKSLTAVSEEVVPFFSSAAKELIAESTASEGGLDTEKLLARCLAAIARKTELQQRSMLTGEPDMATVQLTAHRPLTAGDVMFAVDKLAR 582
BLAST of mRNA_C-linearis_contig104.920.1 vs. uniprot
Match: A0A7S2V2B9_9STRA (RNA helicase (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2B9_9STRA) HSP 1 Score: 494 bits (1271), Expect = 6.700e-152 Identity = 263/540 (48.70%), Postives = 366/540 (67.78%), Query Frame = 1 Query: 1090 DVDPKTVAALKARGIENFTPVQAITYDHVLTGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHKERTYQRGRSPRFLVVCPTRELARQVYTELDTLGRGFGLKADVFHGGSAYGPQMKSLSDGLDILVATPGRVMDHLQKGALSLADVRHAVLDEADEMLNMGFADDIETIFSYVNVQECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKNVNKLATTVKHLSIEVSARHRSSMLEDIITYYGKGSHAIVFTNSKAECDDLSDGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDEMLEFFRESAKELLEEEESGDKEL------LLAKCLAAIARKTHVTRRSMLTGEPDKVTVQMVAPRQ-LTSGDVMFAVGKLG-RAAGFEPMVGKIAVAKDPTTAVFDMATDAADQLIKFSKEQNLESIEFSMCPVLPLL 2685 +VD + L A+GI +FT +Q + +L G+DIIG+SRTGTGKT+AF LP++Q L ++ T QRGR PR L++CPTRELA+QV E++ + F L+ F+GGSAYGPQ +L GLDI+V TPGRVMD + +G L L +++HAVLDEADEMLNMGFA+D+ETIF + QVL+FSAT P WV+ I+++YT P+++DAVG + +LATTV H+SIEV ++ +LED+I +GKGS AIVF +KAECD L+ FK++++Q LHGD+SQ RD IK F+ FQVLVATDVAARG+D+S +DLVVQ PP D D++VHRSGRTGRAG+ G AV LY+ E I+++E+ +G FRFE+ + P+ +QVM A VA + V+ +++ +F + A+++ EE +E+ LL+KCLAAI+ K + RS+LTG+PD +TV M RQ L + D F V KL R + F ++GKI ++D + VFDM +AAD L++ + +FS+C LP L Sbjct: 199 EVDDRIKKTLAAKGITHFTLIQEQSLKPILEGKDIIGRSRTGTGKTVAFTLPLLQKL----DEDPSATRQRGRDPRVLILCPTRELAKQVEAEINDMSTPFRLQTHCFYGGSAYGPQANALRGGLDIVVGTPGRVMDLINRGDLRLQNIQHAVLDEADEMLNMGFAEDVETIFGNFDTDSAQVLMFSATTPDWVKEISSRYTDKPVSIDAVGNSQTRLATTVNHVSIEVDRDLKAGILEDLIAVHGKGSRAIVFAQTKAECDHLTTS-AFKSVSAQPLHGDMSQKLRDTCIKQFKNHKFQVLVATDVAARGLDISGVDLVVQLNPPFDTDTFVHRSGRTGRAGQKGTAVMLYSAQEFGGIKRLERELG--FRFEKSSPPTTQQVMQAASNVAEHSLSEVNPKVVAYFEDKAQQMAEEVMPEGQEVPAELTNLLSKCLAAISGKKDIQERSILTGKPDMMTVMMKTERQQLEARDAFFVVNKLSNRGSDFSNLLGKIETSQDGMSLVFDMDIEAADSLVETATISPFRDFQFSICEKLPPL 731
BLAST of mRNA_C-linearis_contig104.920.1 vs. uniprot
Match: A0A7S2DBW6_9STRA (RNA helicase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DBW6_9STRA) HSP 1 Score: 484 bits (1246), Expect = 8.100e-149 Identity = 269/578 (46.54%), Postives = 372/578 (64.36%), Query Frame = 1 Query: 1060 DEGACPVEE-KDVDPKTVAALKARGIENFTPVQAITYDHVLTGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHKERTYQRGRSPRFLVVCPTRELARQVYTELDTLGRGFGLKADVFHGGSAYGPQMKSLSDGLDILVATPGRVMDHLQKGALSLADVRHAVLDEADEMLNMGFADDIETIFSYVNVQECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKNVNKLATTVKHLSIEVSARH--RSSMLEDIITYY-GKGSHAIVFTNSKAECDDLSDGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDEMLEFFRESA----KELLEEEESGDKEL-----------LLAKCLAAIARKTHVTRRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKLGRAAGFEPMVGKIAVAKDPTTAVFDMATDAADQLIKFSKEQNLESIEFSMCPVLPLLQEVP-----GGGRFGGG 2721 ++G P++ V P+TVA L +G +FT +Q+ + V GRD+I +SRTGTGKTIAFGLP+++ + R RGR+PR LV+ PTRELARQV EL TLGR + VFHGG+ YGPQ SL +G+DILVATPGR++DHL +G L L DVRH VLDEADEML+MGF+ DIE + S+V++ Q LLFSAT PSW++ I+ +Y +PL +DAVG N + ATTV H ++ V R S+LED+IT G S IVFT +K E D+LS G F+ L++ VLHGD+SQ QRD T+ F++ F+VLVATDVAARGID+S++D+VVQ P++ DSYVHR+GRTGRAG+ GV++ LY + + R + ++E +G GF+F++ P+ V+S A A + V + +L + ++ A +E++E+ +S E L+A+ LA KT V S++TGE T+ + APR L DV+FAV KL R FE +GKI + KDP+ AVFD+ + A + ++F +EQ+L+ F +C LP LQ V GGG GGG Sbjct: 137 NKGLTPIDGFSQVHPRTVADLSKKGFTHFTDIQSQAFLPVFEGRDVIARSRTGTGKTIAFGLPIVEAIAASG-----RELDRGRAPRLLVMAPTRELARQVAAELGTLGRAYRFSVAVFHGGAPYGPQEGSLRNGIDILVATPGRILDHLNRGGLKLDDVRHVVLDEADEMLDMGFSKDIEEVLSFVDMDAAQTLLFSATTPSWIQRISAQYMTDPLRLDAVGANEQRTATTVAHKAMLVPDNDEVRMSLLEDVITVEAGVESKTIVFTQTKREADELSSGSAFRVLSAGVLHGDLSQKQRDVTLAQFKSGKFKVLVATDVAARGIDISNVDVVVQTSMPQNSDSYVHRAGRTGRAGKKGVSIVLYTQRQRRGVSRLEHEIGHGFKFQKHTAPTPSTVISAAADNAVAALPVVDETVLSYLKDPASKLYEEIIEKAQSNTPEDEAVDVADATSDLIARLLALATGKTEVKSWSLMTGELGITTLMVKAPRALKQSDVVFAVSKLARHGEFEINIGKIQLGKDPSEAVFDLPSSQALKFMQFVEEQDLQKFAFEVCSELPELQFVADRYGGGGGYRGGG 709
BLAST of mRNA_C-linearis_contig104.920.1 vs. uniprot
Match: A0A1Z5KKE6_FISSO (RNA helicase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KKE6_FISSO) HSP 1 Score: 454 bits (1167), Expect = 6.880e-137 Identity = 271/594 (45.62%), Postives = 359/594 (60.44%), Query Frame = 1 Query: 1093 VDPKTVAALKARGIENFTPVQAITYDHVLTGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHKERTYQ--RGRSPRFLVVCPTRELARQVYTELDTLGRGFGLKADVFHGGSAYGPQMKSLSDGLDILVATPGRVMDHLQKGALSLADVRHAVLDEADEMLNMGFADDIETIFSYV---NVQECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKNVNKLATTVKHLSIEV--SARHRSSMLEDIITYY------------------------------GKGSH--------AIVFTNSKAECDDLSDGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDEMLEFFRESAKELLEEEESGDKELLLAKCLAAIARK-THVTRRSMLTGEPDKVTVQMVAPRQ-LTSGDVMFAVGKLGRAAG------FEPMVGKIAVAKDPTTAVFDMATDAADQLIKFSKEQNLESIEFSMCPVLPLLQEVPGGGRFG 2715 +D + + L +RGI +FT VQ +D VL GRD+IG+SRTGTGKT+AFGLP I L + + +E + RGR P LV+CPTRELARQV EL + GL DVFHGG +Y PQ ++LS GLDI+V TPGRVMDHL +G LSL +++ VLDEADEMLNMGFA+D+E I N + Q LLFSAT P WV I +Y N L +DA G ++A+TV+HL+++V + ++LEDII K H IVF +K D+L G FK+LT+Q LHGD+SQ QRD T+ AFRA F VLVATDVAARGID+ D+DLVVQ PPRD D+YVHRSGRTGRAG GV+V ++ + RDI +IE+ +G FRF+ PS E ++ A + +G+ +E+ F ESA LL +E+ D ++A+CLAAI+R+ T V RS+LTGE VTVQM+ R+ + DV+F V KL R + FE +GKI +A+D TA+FDM+ + A +L++FSK+ + FS+ + EV G FG Sbjct: 98 LDSRVLDVLNSRGITHFTKVQGEAFDPVLAGRDVIGRSRTGTGKTLAFGLPSIARLNKLLANRREANGRLPRGRLPGMLVLCPTRELARQVKDELAAVAEPLGLYVDVFHGGVSYDPQSRALSQGLDIVVGTPGRVMDHLDRGTLSLNELQIVVLDEADEMLNMGFAEDVEVILEGAGKSNKDKTQCLLFSATTPKWVNEIGRRYQRNVLEIDATGNQDARVASTVRHLAVQVPPGVSAKKAILEDIIAVEISKDAGGDSESATDESENEFHNPVAAAAKKAKKQHLQQKIFGKTIVFCETKKMADELVSGGVFKSLTAQALHGDVSQKQRDATLNAFRAGAFNVLVATDVAARGIDIQDVDLVVQMDPPRDVDTYVHRSGRTGRAGNKGVSVLMFNPQQSRDIVRIERDLGHNFRFQLTGPPSIEAALNAAAKTSALACQGIPEEVSTHFEESAAALLADEDE-DPVKVVARCLAAISRRATQVESRSLLTGEVGMVTVQMMNERRSVAPNDVLFTVSKLARLSRESADLTFENDIGKI-LARDDKTAIFDMSLEDAKKLVEFSKDVDAGGNTFSILKEM----EVERGNNFG 685
BLAST of mRNA_C-linearis_contig104.920.1 vs. uniprot
Match: B7G0R3_PHATC (RNA helicase n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G0R3_PHATC) HSP 1 Score: 452 bits (1164), Expect = 5.390e-136 Identity = 261/603 (43.28%), Postives = 369/603 (61.19%), Query Frame = 1 Query: 1084 EKDVDPKTVAALKARGIENFTPVQAITYDHVLTGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHKER----TYQRGRSPRFLVVCPTRELARQVYTELDTLGRGFGLKADVFHGGSAYGPQMKSLSDGLDILVATPGRVMDHLQKGALSLADVRHAVLDEADEMLNMGFADDIETIFSYV---NVQECQVLLFSATVPSWVRNIANKYTANPLTVDAVG-KNVNKLATTVKHLSIEVS--ARHRSSMLEDIITYY--------------------------GKGSHA---------IVFTNSKAECDDLSDGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDEMLEFFRESAKELLEEEESGDKELLLAKCLAAIARK-THVTRRSMLTGEPDKVTVQMVAPR--QLTSGDVMFAVGKLGRAAG------FEPMVGKIAVAKDPTTAVFDMATDAADQLIKFSKEQNLESIEFSMCPVLPLLQEVP----GGGRFGG 2718 E +D + + L +GI +FTPVQA + V+ RD+IG+SRTGTGKT+AFGLP + L F ++ +R + GR +++CPTRELARQV EL + R GL +VFHGG +Y PQ ++L G+D++V TPGRV+DH+++G L L++ AVLDEADEMLNMGFADD+E + V N Q+ Q LLFSAT PSWV+ I +Y + L +D+ K ++A TV+HL+++++ A + S+LEDII KG+ A IVFT +K E D+L G FK+LT+Q LHGD+ Q QRD T+ AFR+ F VLVATDVAARGID+ D+DLV+Q+ PPRD D+YVHRSGRTGRAG+ GV+V L+ + + RDI +IE+ +G GF+F+ PSAE ++ A + + + +E EFF+ESA +LLE ++ D ++A+CLAA++R+ + V RS+LTG+ TV+MV R + + DVMF +GKL R + F+ VG+I + + VFDM + A L+KFSK + F + L + ++ GGGR GG Sbjct: 141 EAGLDQRVIDVLSEKGITSFTPVQAEAFGPVMARRDVIGRSRTGTGKTLAFGLPALTRLVTFTTENGKRDARGVMKSGRKVSMIILCPTRELARQVQEELSQVARPLGLFVEVFHGGVSYDPQSRALRQGVDVIVGTPGRVIDHIERGTLDLSECDIAVLDEADEMLNMGFADDVEVVLKNVGSNNPQKTQCLLFSATTPSWVKEIGRQYQKDVLAIDSTADKGGARVAETVRHLAVQLAPGADAKRSVLEDIIAVEISKDADIGKIELEIANPIAAAAHKRKNKGNQAMQQKIFGKTIVFTETKREADELVSGGVFKSLTAQALHGDVGQKQRDSTLAAFRSGAFNVLVATDVAARGIDIQDVDLVIQFDPPRDVDTYVHRSGRTGRAGKKGVSVLLFNQRQSRDIVRIERDLGHGFKFDLVGPPSAEATLNAAAKTSAIATQSIPEETAEFFKESAAKLLESQDPVD---VVARCLAAVSRRASEVQSRSLLTGQVGFATVEMVNERGRPVAANDVMFTIGKLSRMSNQEGDLAFDSQVGRIQTNSESGSVVFDMNVEDAKNLVKFSKTVDAGGAAFQLLKALAVERDRNFGRMGGGRDGG 740
BLAST of mRNA_C-linearis_contig104.920.1 vs. uniprot
Match: A0A7S3ZWQ0_9STRA (RNA helicase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWQ0_9STRA) HSP 1 Score: 448 bits (1152), Expect = 4.890e-135 Identity = 268/622 (43.09%), Postives = 356/622 (57.23%), Query Frame = 1 Query: 1039 VSLVEVGDEGACPVEEKDVDPKTVAA---------LKARGIENFTPVQAITYDHVLTGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHKERTYQRGRSPRFLVVCPTRELARQVYTELDTLGRGFGLKADVFHGGSAYGPQMKSLSDGLDILVATPGRVMDHLQKGALSLADVRHAVLDEADEMLNMGFADDIETIFS-------------------------------------YVNVQECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKNVNKLATTVKHLSIEVSARH--RSSMLEDIITY-------------YGKGSHAIVFTNSKAECDDLSDGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDEMLEFFRESAKELLEEE--ESGDKEL-LLAKCLAAIARKTHVTRRSMLTGEPDKVTVQMVAPRQLTSGDVMFAVGKL--------GRAAGFEPMVGKIAVAKDPTTAVFDMATDAADQLIKFSKEQNLESIEFSMCPVLPLLQ 2688 V V VG+E P E + DP + L RGI FT +Q +Y+ V GRD++GKSRTGTGKT+AFGLP+I+ L + + +RGR P LV+ PTRELA+QV+ EL L G FHGG +YGPQ +L G+DILVAT GRV+DH+ +G L L D H VLDEADEML+MGFADD+E IF + Q LLFSAT P W++ + ++ + + VD VG + ATTV H ++ V + R+S+LEDII+ G IVFT +K ECD+L+ G F+ L++QVLHGDI Q QR+ T+ FR F VLVATDVAARGIDV +DLVVQ+R PRD + YVHRSGRTGRAGR G AV LY + E RD+R +E+ G +F+R PSA +V+ A A + V D+++ F E+AK+L +E E+ D+ L+A+CLAA+AR+ + RS+LTGE D+ T+ M APR L + DV++AV KL G VG + V K+P+ AVFD+ + A +L+ F +EQN F +C VLP LQ Sbjct: 65 VEDVVVGEE-VVPDAEPEKDPMAIEGRISDRQAERLAERGITTFTEIQHRSYEPVFEGRDLLGKSRTGTGKTVAFGLPIIEKLAEMRSNGEYDHKRRGRGPAMLVLTPTRELAKQVHDELKYLADTHGFSTTCFHGGVSYGPQEGALRRGVDILVATVGRVIDHIDRGNLQLNDAYHVVLDEADEMLSMGFADDVERIFGECPAGKAKGMGSGGGAPAPDDAFDLDELLGEEAPPAPVAESRRPQTLLFSATSPGWIKKMTRRFMTDHVFVDVVGDATQQAATTVTHKAVLVPRSNDARASLLEDIISVELSQRQGQVTDEQQNGGGRVIVFTATKRECDELAGGPAFQRLSAQVLHGDIGQSQREATLAQFRRGQFSVLVATDVAARGIDVKGVDLVVQFRTPRDAEGYVHRSGRTGRAGRDGTAVVLYDDREERDVRSLERETG--VKFQRLGPPSAGRVLEAASLDAARALTRVQDDVVPHFLETAKQLCADELAETSDEAASLVARCLAAVARQNELRARSVLTGEADRTTLLMSAPRPLKTSDVVYAVSKLLERVPKQEGATPNDNDRVGAVRVCKEPSQAVFDVRSTTAQRLLAFCEEQNFNKFTFEVCEVLPQLQ 683
BLAST of mRNA_C-linearis_contig104.920.1 vs. uniprot
Match: A0A7S3V908_9STRA (RNA helicase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V908_9STRA) HSP 1 Score: 448 bits (1152), Expect = 1.490e-133 Identity = 262/592 (44.26%), Postives = 350/592 (59.12%), Query Frame = 1 Query: 1087 KDVDPKTVAALKARGIENFTPVQAITYDHVLTGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHKERT----YQRGRSPRFLVVCPTRELARQVYTELDTLGRGFGLKADVFHGGSAYGPQMKSLSDGLDILVATPGRVMDHLQKGALSLADVRHAVLDEADEMLNMGFADDIETIFSYV---NVQECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKNVNKLATTVKHLSIEV--SARHRSSMLEDIITY---------------------------------YGKGSHA---------IVFTNSKAECDDLSDGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDEMLEFFRESAKELLEEEESGDKELLLAKCLAAIARKTH-VTRRSMLTGEPDKVTVQM--VAPRQLTSGDVMFAVGKLGRAA------GFEPMVGKIAVAKDPTTAVFDMATDAADQLIKFSKEQNLESIEFSMCPVLPL 2682 K +D + + L A+GI FT VQ ++ VL GRD+IG+SRTGTGKTIAFG P I + A+ + +RGR FLV+CPTRELARQV EL +G+ L +FHGG +Y PQ ++L +G+DILV TPGRV+DH+Q+G L+L++ VLDEADEMLNMGFADD+E I V N Q+ Q LLFSAT P W++ I Y +NP+++DA N + ATTV+H++I+V + S+LEDII G++A IVFT +K + D+L G FK+L++Q +HGDI Q QRD T+ AFRA F VLVATDVAARGID+ D+DLVVQ+ PPR+ D+YVHRSGRTGRAG+ G +V L+ + RDI KIE+ VG F+FE PS+E M A + + V D +F+E+A LL E + ++AKCLAAI+R+ V RS+LTGE T++M R +T GDVM+ + KL R + GF+ VGKI AVFD+ D A +LI FSK+ + +F + L L Sbjct: 187 KGMDQRLIDTLSAKGITTFTEVQGKAFEPVLAGRDVIGRSRTGTGKTIAFGFPTIHRIAEMAKTNGNMDSYGKMRRGRGVSFLVLCPTRELARQVGDELSLVGKPLNLYTTIFHGGVSYDPQARALRNGIDILVGTPGRVIDHIQRGNLNLSECDTVVLDEADEMLNMGFADDVELILDGVGSSNEQKTQCLLFSATTPRWIKEIGRNYQSNPISIDASADNSARTATTVRHIAIQVPPGPDSKKSILEDIIAVEISKDIDKAKIAGEDKEEEDLSHNPIAMAAXXXXXXGNNAMQQKIFGKTIVFTETKRDADELVSGGVFKSLSAQAIHGDIGQKQRDATLNAFRAGAFNVLVATDVAARGIDIKDVDLVVQFSPPREVDTYVHRSGRTGRAGQKGTSVLLFDPRQARDIVKIERSVGHNFKFELAGPPSSEMAMIAASKTSAIACQSVPDSTSAYFKEAATNLLAGGEPAED--IIAKCLAAISRRAGGVESRSLLTGEGGLATIEMSNTTGRPVTPGDVMYTISKLSRMSKQGDDLGFDSDVGKIKSNAQTGVAVFDVGVDDAKKLIDFSKDIDAGGAQFRILKELEL 776
BLAST of mRNA_C-linearis_contig104.920.1 vs. uniprot
Match: A0A7S4R924_9STRA (RNA helicase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R924_9STRA) HSP 1 Score: 445 bits (1145), Expect = 1.750e-133 Identity = 262/579 (45.25%), Postives = 352/579 (60.79%), Query Frame = 1 Query: 1108 VAALKARGIENFTPVQAITYDHVLTGRDIIGKSRTGTGKTIAFGLPVIQHLGRFAEDHKERTYQRGRSPRFLVVCPTRELARQVYTELDTLGRGFGLKADVFHGGSAYGPQMKSLSDGLDILVATPGRVMDHLQKGALSLADVRHAVLDEADEMLNMGFADDIETIFSYV---NVQECQVLLFSATVPSWVRNIANKYTANPLTVDAVGKNVN-KLATTVKHLSIEVSARHRS--SMLEDIITY----------YGKGSH----------------------------------AIVFTNSKAECDDLSDGQTFKTLTSQVLHGDISQHQRDQTIKAFRAKGFQVLVATDVAARGIDVSDIDLVVQYRPPRDPDSYVHRSGRTGRAGRPGVAVTLYAENEIRDIRKIEQGVGQGFRFERGAVPSAEQVMSLAGTVAREQIKGVSDEMLEFFRESAKELLEEEESGDKELLLAKCLAAIARKT-HVTRRSMLTGEPDKVTVQMV--APRQLTSGDVMFAVGKLGRAAG-------FEPMVGKIAVAKDPTTAVFDMATDAADQLIKFSKEQNLESIEFSM 2664 + L A+GI FTPVQ + V+ GRD+IG+SRTGTGKT+AFGLP I L E + RGR P +++CPTRELARQV+ E+ + R GL + VFHGG +YGPQ +L GLDILV TPGRV+DHL +G + L++V VLDEADEMLNMGFA+D+E I V N ++ Q LLFSAT P WV+ I N+Y + +++D+ + ATTV+H++I+V H S S+LEDII +GK IVFT +K + D+L G FK+LT+Q LHGD+ Q QRD T+ AFRA F VLVATDVAARGID++D+DLV+Q+ PPRD D+YVHRSGRTGRAGR G +V L+ N+ RDI KIE+ +G GF+FE PS E ++ A + + V +E +FF ++A LLE E D + ++A+CLAAI+R++ V RS+LTGE VTV+M R ++ GDVMF V KL R + F+ VGKI + +A+FDM + A +L++FSK+ + FS+ Sbjct: 112 IDVLSAKGITQFTPVQGEAFAPVVAGRDVIGRSRTGTGKTLAFGLPSITRLTAPDETGQVPPRLRGRKPSMVILCPTRELARQVHEEVAHVARPLGLFSAVFHGGVSYGPQASALRQGLDILVGTPGRVIDHLDRGNIDLSEVDIVVLDEADEMLNMGFAEDVEHILGGVGSANEKKTQFLLFSATTPPWVKEIGNQYQKDVISIDSTSDETGARTATTVRHMAIQVPPGHDSAKSILEDIIAVEISKDIDPHAFGKTKEQEELAAINPIAAXXXXXXXXKNANSAMQQKIFGKTIVFTETKRDADELVSGSIFKSLTAQALHGDVGQKQRDATLAAFRAGAFNVLVATDVAARGIDITDVDLVIQFEPPRDVDTYVHRSGRTGRAGRKGTSVLLFRPNQSRDIVKIERSLGHGFKFELAGPPSIEAALTAAAKTSAIACRSVPEETAKFFTDAAGSLLENGE--DPQEVVARCLAAISRRSSEVQSRSLLTGELGLVTVEMTNNRDRPVSPGDVMFTVSKLSRMSQRGDGNLTFDSDVGKIHSDFETGSAIFDMGVEDAKKLVEFSKDIDAGGAVFSI 688 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.920.1 >prot_C-linearis_contig104.920.1 ID=prot_C-linearis_contig104.920.1|Name=mRNA_C-linearis_contig104.920.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=935bp MTSQRSTTLAVLGLLAGFVNVDAFRLIPASPGAVSSSLARAQQQSAVASRback to top mRNA from alignment at C-linearis_contig104:515617..526370+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.920.1 ID=mRNA_C-linearis_contig104.920.1|Name=mRNA_C-linearis_contig104.920.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=10754bp|location=Sequence derived from alignment at C-linearis_contig104:515617..526370+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:515617..526370+ >mRNA_C-linearis_contig104.920.1 ID=mRNA_C-linearis_contig104.920.1|Name=mRNA_C-linearis_contig104.920.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5610bp|location=Sequence derived from alignment at C-linearis_contig104:515617..526370+ (Chordaria linearis ClinC8C monoicous)back to top |