mRNA_C-linearis_contig104.918.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.918.1 vs. uniprot
Match: D8LEA0_ECTSI (Thioredoxin-like_fold domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEA0_ECTSI) HSP 1 Score: 296 bits (759), Expect = 1.490e-89 Identity = 152/234 (64.96%), Postives = 176/234 (75.21%), Query Frame = 3 Query: 129 AKHKMPRPCRRGRNRALCAAAVLLGLLFFTILAAVTVQSEPDIPFDRYGHVLFTQGSPDAVAKVEVYLDLACSDCALTWPVLTQVAEAYGHQAEFLYRLFPLPYHRNAFTAAKAAKVVSLYS--DSDNEIASFFTAVFDGQDRISNDATEDLTQPEIEAILADWATSATGVSEKAFNTGMSDDEADTLTRFQFKYGCLHGVFGTPQVFIGGVLAGGLDGEATFQDWQDLLEPLV 824
A M RR R L A+L GL TILAAV VQSEP IPFD YGHV+ QG+ +A KVEVYLDLACSDCAL WPV+ +VAEAYG + EFLYRLFPLPYH NAF AAKAAK + LYS D +ASFFT VF GQD ISND+TE +TQP+IE IL WATS++G+S F+ GM+D E + TR QFKYGCLHGV GTPQV+IGG+LA GLDG+ATFQDWQD+L+PL+
Sbjct: 11 AHRNMAAASRRLSFRTLLGVALLFGLTL-TILAAVAVQSEPAIPFDGYGHVILRQGTLEAALKVEVYLDLACSDCALAWPVMNRVAEAYGDRTEFLYRLFPLPYHNNAFKAAKAAKTIQLYSRGSEDASVASFFTEVFIGQDEISNDSTELMTQPQIEDILESWATSSSGMSADNFHMGMADAEVEIQTRNQFKYGCLHGVDGTPQVYIGGILASGLDGDATFQDWQDILDPLL 243
BLAST of mRNA_C-linearis_contig104.918.1 vs. uniprot
Match: A0A815YPJ9_9BILA (Hypothetical protein n=4 Tax=Rotaria TaxID=231623 RepID=A0A815YPJ9_9BILA) HSP 1 Score: 129 bits (325), Expect = 8.600e-30 Identity = 73/210 (34.76%), Postives = 118/210 (56.19%), Query Frame = 3 Query: 204 LLFFTILAAVTVQSEPDIPF--DRYGHVLFTQGSPDAVAKVEVYLDLACSDCALTWPVLTQVAEAYGHQAEFLYRLFPLPYHRNAFTAAKAAKVVSLYSDSD-NEIASFFTAVFDGQDRISNDATEDLTQPEIEAILADWATSATGVSEKAFNTGMSDDEADTLTRFQFKYGCLHGVFGTPQVFIGGVLAGGLDGEATFQDWQDLLEPLV 824
+L FT+L + ++ IP D YG G DA +E++LD C DC +WP + QV +AYG + F + FPLPYH N+F A++ V+S ++ + + I ++ T VF+ Q+ NDAT+++T P++ LA + V++ F GM++D+ + TR +KY C GV GTP I GV A D + DW+ +++P++
Sbjct: 4 ILIFTLLVGF-ISAQAPIPTRPDGYG----VGGPADAHVVIEMFLDPLCPDCKASWPTVLQVIQAYGTKIHFRFHTFPLPYHTNSFVASQGVHVISNVTNRNLDSIFTYVTKVFENQETWYNDATKNMTMPQVVDSLAAFVAQLGLVTKAQFLAGMANDDINFETRVSWKYACSRGVVGTPTFLINGV-ATSADDSWSLADWKSVIDPIL 207
BLAST of mRNA_C-linearis_contig104.918.1 vs. uniprot
Match: A0A194ANN1_PINFU (Thioredoxin-like_fold domain-containing protein n=1 Tax=Pinctada fucata TaxID=50426 RepID=A0A194ANN1_PINFU) HSP 1 Score: 117 bits (294), Expect = 9.600e-26 Identity = 76/215 (35.35%), Postives = 112/215 (52.09%), Query Frame = 3 Query: 192 VLLGLLFFTILAAVTVQSEPDIPFDRYGHVLFTQGSPDAVAKV--EVYLDLACSDCALTWPVLTQVAEAYG-HQAEFLYRLFPLPYHRNAFTAAKAAKVVSLYSDSDNEIASFFTAVFDGQDRISNDATEDLTQPEIEAILADWATSATGVSEKAFNTGMSDDEADTLTRFQFKYGCLHGVFGTPQVFIGGVLAGGLDGEATFQDWQDLLEPLVG 827
+LL +L + A V + +P + FT G+ DA A++ E ++ C D + L VA YG + Y LFPLPYHRNAF AAKA ++V +++S NE F ++ D SNDAT +++ E+ LAD+ + VS K F MS D + TR ++KY C G GTP + VL D + T +W+ +L+PL+G
Sbjct: 5 LLLNVLVLSAFAQVPIPKQP---------LGFTYGNGDASAQIQLEAFMGPLCPDSKECFATLQNVASFYGPSRLRLRYHLFPLPYHRNAFIAAKATRIVDRFTNS-NETIDFMGTIYTNIDSFSNDATHGMSEAEVIQKLADYGSKMAKVSMKEFVDMMSSDTIEGDTRTEWKYTCSRGFSGTPTFTVNDVLVAA-DPKWTVSEWRQVLDPLLG 208
BLAST of mRNA_C-linearis_contig104.918.1 vs. uniprot
Match: A0A5A7Q744_STRAF (Thioredoxin superfamily protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7Q744_STRAF) HSP 1 Score: 111 bits (278), Expect = 4.390e-24 Identity = 57/169 (33.73%), Postives = 94/169 (55.62%), Query Frame = 3 Query: 318 VEVYLDLACSDCALTWPVLTQVAEAYGHQAEFLYRLFPLPYHRNAFTAAKAAKVVSLYSDSDNEIASFFTAVFDGQDRISNDATEDLTQPEIEAILADWATSATGVSEKAFNTGMSDDEADTLTRFQFKYGCLHGVFGTPQVFIGGVLAGGLDGEATFQDWQDLLEPLV 824
+E + D C D +WP L +V + YG + + + RLFPLPYH NAF A++A +V+ + + A F+ Q+ S ++T +L++ + + +++ A G S+ A +G +DE D LTR FK G + GV+GTPQ F+ G + + W+ +L+PLV
Sbjct: 42 IEAFFDPVCPDSRNSWPPLKEVLKYYGDRVKLITRLFPLPYHANAFVASRAITIVNDVVSTSSAYL-LLEAFFNNQETFSGNSTFNLSRAVVTDRIVKFSSKAVGHSQSAIQSGFQNDETDYLTRVGFKQGGIRGVYGTPQFFVNGFIFAEPGSAQNYSTWRAVLDPLV 209
BLAST of mRNA_C-linearis_contig104.918.1 vs. uniprot
Match: A0A2R6WDY7_MARPO (Thioredoxin-like_fold domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WDY7_MARPO) HSP 1 Score: 111 bits (277), Expect = 9.460e-24 Identity = 67/208 (32.21%), Postives = 98/208 (47.12%), Query Frame = 3 Query: 204 LLFFTILAAVTVQSEPDIPFDRY--GHVLFTQGSPDAVAKVEVYLDLACSDCALTWPVLTQVAEAYGHQAEFLYRLFPLPYHRNAFTAAKAAKVVSLYSDSDNEIASFFTAVFDGQDRISNDATEDLTQPEIEAILADWATSATGVSEKAFNTGMSDDEADTLTRFQFKYGCLHGVFGTPQVFIGGVLAGGLDGEATFQDWQDLLEPL 821
L+F +L +++V IP + G + + P+ V +E ++D C DC + WP +T+V YG F+ FP+P+H NAF AA+A + S + S +F QD NDAT D T + + D A G+ F G +D D TR FKYGC V TP + G+ D + +DW LL+PL
Sbjct: 11 LVFCLVLCSISVSLVAAIPIPAHYDGFGIPPRSIPEPVL-LEAFIDPICIDCKIAWPTVTKVLSIYGSSLSFIVHPFPVPFHHNAFFAARALHIASSLNSSST--FPLLELIFKKQDSFLNDATNDETPASVVSRFVDLAAEV-GLPADEFAAGFTDSNTDQATRISFKYGCARYVTSTPSFLLNGIYVSA-DETWSVEDWAKLLDPL 213
BLAST of mRNA_C-linearis_contig104.918.1 vs. uniprot
Match: W4FQ48_9STRA (Thioredoxin-like_fold domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FQ48_9STRA) HSP 1 Score: 110 bits (276), Expect = 2.300e-23 Identity = 74/237 (31.22%), Postives = 118/237 (49.79%), Query Frame = 3 Query: 195 LLGLLF----FTILAAVTVQSEPDIPFDRYGHVLFTQGSPDAVAKVEVYLDLACSDCALTWPVLTQVAEAY-GHQAEFLYRLFPLPYHRNAFTAAKAAKVVSLYSDSDNEIASFFTAVFDGQDRISNDATEDLTQPEIEAILADWATSA-----TGVSEKAFNTGMSDDEADTLTRFQFKYGCLHGVFGTPQVFIGGVLAGGLDGEATFQDWQDLLEPLVGGPAARLKLNGTHNSVV 875
++GLLF F +LA + S DIP G + G P A +++V++DL C +P L Q+ +A+ G +++ PLP+HRNAF AA++ V ++S + ++ QD++SN T + T ++ LA WA +A K G ++DE TR F+Y HGV GTP ++ GV D +F DW +++ PLV A + L T+N+ +
Sbjct: 1 MMGLLFRAAIFVVLAMLPSSSVGDIPTTTPGFT-YKDGLPQAPVQLQVFIDLLCPYSKAAYPALKQLGDAFEGKDFRLTFQVLPLPFHRNAFLAAQSTVSV-VHSVGVQSFVPWLETIYANQDKLSNTNTLNTTPNDLITQLASWAHAAFPSIDVASFRKTLLPGTAEDEK---TRQLFRYTLAHGVAGTPMYYLNGVHYNNADSAWSFNDWFNVINPLVQANKAAVPLPSTYNNPI 232
BLAST of mRNA_C-linearis_contig104.918.1 vs. uniprot
Match: W4FS09_9STRA (Thioredoxin-like_fold domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FS09_9STRA) HSP 1 Score: 105 bits (263), Expect = 2.550e-21 Identity = 72/229 (31.44%), Postives = 113/229 (49.34%), Query Frame = 3 Query: 195 LLGLLF----FTILAAVTVQSEPDIPFDRYGHVLFTQGSPDAVAKVEVYLDLACSDCALTWPVLTQVAEAY-GHQAEFLYRLFPLPYHRNAFTAAKAAKVVSLYSDSDNEIASFFTAVFDGQDRISNDATEDLTQPEIEAILADWATSA-----TGVSEKAFNTGMSDDEADTLTRFQFKYGCLHGVFGTPQVFIGGVLAGGLDGEATFQDWQDLLEPLVGGPAARLKL 851
++GLLF F +LA + S DIP G + G P A +++V++DL C +P L Q+ +A+ G +++ PLP+HRNAF AA++ V ++S + ++ QD++SN T + T ++ LA WA +A K G ++DE TR F+Y HGV GTP ++ GV D +F DW +++ PLV A + L
Sbjct: 1 MMGLLFRAAIFVVLAMLPSSSVGDIPTTTPGFT-YKDGLPQAPVQLQVFIDLLCPYSKAAYPALKQLGDAFEGKDFRLTFQVLPLPFHRNAFLAAQSTVSV-VHSVGVQSFVPWLETIYANQDKLSNTNTLNTTPNDLITQLASWAHAAFPSIDVASFRKTLLPGTAEDEK---TRQLFRYTLAHGVAGTPMYYLNGVHYNNADSAWSFNDWFNVINPLVQANKAAVPL 224
BLAST of mRNA_C-linearis_contig104.918.1 vs. uniprot
Match: A0A176WPY7_MARPO (Thioredoxin-like_fold domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WPY7_MARPO) HSP 1 Score: 107 bits (268), Expect = 4.170e-20 Identity = 65/203 (32.02%), Postives = 96/203 (47.29%), Query Frame = 3 Query: 213 FTILAAVTVQSEPDIPFDRYGHVLFTQGSPDAVAKVEVYLDLACSDCALTWPVLTQVAEAYGHQAEFLYRLFPLPYHRNAFTAAKAAKVVSLYSDSDNEIASFFTAVFDGQDRISNDATEDLTQPEIEAILADWATSATGVSEKAFNTGMSDDEADTLTRFQFKYGCLHGVFGTPQVFIGGVLAGGLDGEATFQDWQDLLEPL 821
F +L A+ + + +D +G + + P+ V +E ++D C DC + WP +T+V YG F+ FP+P+H NAF AA+A + S + S +F QD NDAT D T + + D A G+ F G +D D TR FKYGC V TP + G+ D + +DW LL+PL
Sbjct: 609 FLVLRAIPIPAH----YDGFG--IPPRSIPEPVL-LEAFIDPICIDCKIAWPTVTKVLSIYGSSLSFIVHPFPVPFHHNAFFAARALHIASSLNSSST--FPLLELIFKKQDSFLNDATNDETPASVVSRFVDLAAEV-GLPADEFAAGFTDSNTDQATRISFKYGCARYVTSTPSFLLNGIYVSA-DETWSVEDWAKLLDPL 800
BLAST of mRNA_C-linearis_contig104.918.1 vs. uniprot
Match: A0A7S3H9Z6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9Z6_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.420e-19 Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = 3 Query: 417 YRLFPLPYHRNAFTAAKAAKVVSLYSDSDNEIASFFTAVFDGQDRISNDATEDLTQPEIEAILADWATSATGVSEKAFNTGMSDDEA-----DTLTRFQFKYGCLHGVFGTPQVFIGGVLAGGLDGEATFQDWQDLLEPLV 824
YR+FPLPYH+ AF +KAA++V + + + +FF + QD I N T D T ++ ++ WA TGV+E+ + GM+ + + TR+ +K C+ GVF TP I G+ GGLD TF+DWQ L+PLV
Sbjct: 2 YRVFPLPYHQQAFIVSKAAQLVQQLGNPE-AVFTFFDTAYANQDLIYNANTLDKTYNDVVKLVEPWAVQGTGVTEENYFIGMNSSTSVGNPIEMETRYMWKQVCIEGVFATPLFQIDGLKVGGLD---TFEDWQATLDPLV 138
BLAST of mRNA_C-linearis_contig104.918.1 vs. uniprot
Match: UPI00145888FB (uncharacterized protein LOC117332932 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI00145888FB) HSP 1 Score: 99.0 bits (245), Expect = 3.010e-19 Identity = 68/209 (32.54%), Postives = 105/209 (50.24%), Query Frame = 3 Query: 213 FTILAAV-TVQSEPDIPFDRYGHVLFTQGSPDAVAKVEVYLDLACSDCALTWPVLTQVAEAYG-HQAEFLYRLFPLPYHRNAFTAAKAAKVVSLYSDSDNEIASFFTAVFDGQDRISNDATEDLTQPEIEAILADWATSATGVSEKAFNTGMSDDEADTLTRFQFKYGCLHGVFGTPQVFIGGVLAGGLDGEATF--QDWQDLLEPLVG 827
F + A + V + IP G + G+ A ++ +L C D +P L +VA+ YG + + LFPLPYHRNAF AAK A++ ++ S S N S+ TAV+ SND T D T+ +++ + A A + + + FNT D + TR +KY GV TP I VL + E T+ +DW+ +++ L+G
Sbjct: 7 FVVFALIGAVYGQIPIPSKPLGFS-YGLGNKSAPIQLSTFLGPLCPDSQNAFPTLLKVADYYGPDRVRLITHLFPLPYHRNAFLAAKGAQITNVLS-SGNSTYSWMTAVYSNLAAFSNDVTHDKTEKQVQDMFASMAKTL-NLDQTKFNTMYKDSGIEEATRLDWKYTATRGVAWTPAFMINDVL---IQAEPTWTLEDWKKVIDSLLG 209 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.918.1 >prot_C-linearis_contig104.918.1 ID=prot_C-linearis_contig104.918.1|Name=mRNA_C-linearis_contig104.918.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=246bp MPRPCRRGRNRALCAAAVLLGLLFFTILAAVTVQSEPDIPFDRYGHVLFTback to top mRNA from alignment at C-linearis_contig104:504258..510959+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.918.1 ID=mRNA_C-linearis_contig104.918.1|Name=mRNA_C-linearis_contig104.918.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6702bp|location=Sequence derived from alignment at C-linearis_contig104:504258..510959+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:504258..510959+ >mRNA_C-linearis_contig104.918.1 ID=mRNA_C-linearis_contig104.918.1|Name=mRNA_C-linearis_contig104.918.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at C-linearis_contig104:504258..510959+ (Chordaria linearis ClinC8C monoicous)back to top |