mRNA_C-linearis_contig104.917.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig104.917.1 vs. uniprot
Match: D8LE66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE66_ECTSI) HSP 1 Score: 296 bits (757), Expect = 3.160e-98 Identity = 170/252 (67.46%), Postives = 186/252 (73.81%), Query Frame = 1 Query: 1 MSSKWALDDDDGKDEGGNGSPLTPNSPPSEQKEVA--GGRRSRRPRPGQADAETADSSKNGVDGPPVKTVAGGWGLDASGLINSEAQSKSTTHMVETQQKQIEGGSNRATRRNHFDNEETEILVIPDLEDEGEEDIVLKVAAAPKNTTRRVPSLRELDEDLKHAIPSSADGLDMSLLTKTLVPPEMLEEDDSPWDFDTLLQSVTQEFNAEKRVTLNAEGGAGSDPSSSIALKEGGSGSQMQSGHRSSRALVV 750 MSSKWA DDD G+D+ GNGSPLTPNSPP E K+ GGRRSRRPRPG+ D + A + K D PPVKTVAGGW LD +G +SEAQ K IEGGSNRA RRNHFDNEETEILVIPDLEDEGEED+ KVAAAP+NTTRRVPSLRELDEDLK+AIPS ADGLDMSLLTKTLVP EMLEEDDSPW+FD+LLQSVTQEFNAEKR+ A+ G D S+ RSSRALV Sbjct: 1 MSSKWASDDD-GQDDAGNGSPLTPNSPPYEHKDSGSGGGRRSRRPRPGRDDIDAAAAEK---DRPPVKTVAGGWELDGAGSASSEAQKXXXXXXXXXXXKPIEGGSNRANRRNHFDNEETEILVIPDLEDEGEEDVETKVAAAPQNTTRRVPSLRELDEDLKYAIPSGADGLDMSLLTKTLVPSEMLEEDDSPWEFDSLLQSVTQEFNAEKRLAFRAKLGTDDDGSTXXXXXXXXXXXXXXXXRRSSRALVA 248
BLAST of mRNA_C-linearis_contig104.917.1 vs. uniprot
Match: A0A7S2Y124_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y124_9STRA) HSP 1 Score: 130 bits (328), Expect = 2.360e-33 Identity = 77/166 (46.39%), Postives = 104/166 (62.65%), Query Frame = 1 Query: 151 ETADSSKNGVDGPPVKTVAGGWGLDASGLINSEAQSKSTTHMVETQQKQIEGGSNRATRRNHFDNEETEILVIPDLEDEGEEDIVLKVAAAPKNTTRRVPSLRELDEDLKHAIPSSADGLDMSLLTKTLVPPEMLEEDDSPWDFDTLLQSVTQEFNAEKRVTLNAE 648 + A K+ D +V GWG S +EA + ST+ E + + + N RR +D+E TE+++IPD+++E EEDI KVAAAP+NT +RV SLREL+ DLK + SSA+G+D+SLLT LVP + L+E+D W FD LLQ VTQEFNAE N E Sbjct: 29 DDAAGGKDDGDDAAKPSVQQGWG---SPNAKTEAGADSTSANNENDEAEKK---NEGRRRARWDDEATELIIIPDMDEEAEEDITTKVAAAPRNTAKRVQSLRELEHDLKMTVTSSANGIDLSLLTAHLVPAQQLQEEDITWHFDALLQEVTQEFNAEAEKRPNQE 188
BLAST of mRNA_C-linearis_contig104.917.1 vs. uniprot
Match: A0A836CKA7_9STRA (Intraflagellar transport protein 43-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKA7_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.210e-32 Identity = 66/115 (57.39%), Postives = 86/115 (74.78%), Query Frame = 1 Query: 355 EILVIPDLEDEGEEDIVLKVAAAPKNTTRRVPSLRELDEDLKHAIPSSADGLDMSLLTKTLVPPEMLEEDDSPWDFDTLLQSVTQEFNAEKRVTL-NAEGGAGSDPSSSIALKEG 696 ++LVIPDLE+ G +D VAAAP+NT RRVPSLRELD ++ IPS+A+GLDMS+LTKTLVPP +L+E DS W+FDTLLQ VTQ +NA ++ L A + P+++ ALK G Sbjct: 21 DVLVIPDLEEGGADDFAHTVAAAPRNTARRVPSLRELDHAIRFTIPSAAEGLDMSMLTKTLVPPHVLQEPDSLWEFDTLLQEVTQAYNATRKQKLATATAPFAAAPAAAAALKAG 135
BLAST of mRNA_C-linearis_contig104.917.1 vs. uniprot
Match: A0A7S3YC96_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YC96_HETAK) HSP 1 Score: 123 bits (308), Expect = 3.690e-31 Identity = 84/180 (46.67%), Postives = 106/180 (58.89%), Query Frame = 1 Query: 148 AETADSSKNGVDGPPVK--TVAGGWG-----LDASGLINSEAQSKSTTHMVETQQKQIEGGSNRATRRNHFDNE-ETEILVIPDLEDEGEEDIVLKVAAAPKNTTRRVPSLRELDEDLKHAIPSSADGLDMSLLTKTLVPPEMLEEDDSPWDFDTLLQSVTQEFNA--EKRVTLNAEGGA 657 A+ K+ DG V V GWG D+ +A++K T E +K RR +D+E TEIL+IPDLE+E EEDI +VAAAP+NT +RV SLREL+ DLK + SS +G+D+S LT LVP EMLEE+D WDFD+LLQ VTQE+NA EKR A A Sbjct: 23 AKPRREGKDTDDGKDVNKPNVQQGWGSPVGTTDSLKKEEPKAEAKKDTEADEDDKKD--------RRRARWDDEGATEILLIPDLEEEAEEDITTQVAAAPRNTAKRVQSLRELENDLKMTVSSSENGIDLSALTAHLVPAEMLEEEDVLWDFDSLLQEVTQEYNARAEKRPEATAAAAA 194
BLAST of mRNA_C-linearis_contig104.917.1 vs. uniprot
Match: A0A7S2SRC7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SRC7_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.470e-26 Identity = 65/118 (55.08%), Postives = 84/118 (71.19%), Query Frame = 1 Query: 316 RATRRN--HFDNEETEILVIPDLEDEGE--EDIVLKVAAAPKNTTRRVPSLRELDEDLKHAIPSSADGLDMSLLTKTLVPPEMLEEDDSPWDFDTLLQSVTQEFNAE--KRVTLNAEG 651 R R+N ++E TEIL+IPDL+DE EDI +VAAAP+N RRV SL++LD D+K+ +PS A G+D+S+LT +LVPP M+ EDD W+FD+LLQ VT EFNAE KR A G Sbjct: 105 RGRRKNLRDMEDEATEILMIPDLDDEENDAEDITTQVAAAPRNLARRVQSLQQLDHDIKYTVPSGA-GIDLSILTSSLVPPTMVREDDVLWEFDSLLQEVTHEFNAEVEKRAEDEAAG 221
BLAST of mRNA_C-linearis_contig104.917.1 vs. uniprot
Match: A0A7S2D6Z0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D6Z0_9STRA) HSP 1 Score: 113 bits (283), Expect = 2.560e-26 Identity = 62/143 (43.36%), Postives = 89/143 (62.24%), Query Frame = 1 Query: 211 GWGLDASGLINSEAQSKSTTHMVETQQKQIEGGSNRATRRNHF-----DNEETEILVIPDLEDEGEEDIVLKVAAAPKNTTRRVPSLRELDEDLKHAIPSSADGLDMSLLTKTLVPPEMLEEDDSPWDFDTLLQSVTQEFNAE 624 GWG G EA+ K + +++ + RR DN+ +++IPDL++E ED+ +VA APKN RRV SL++LD ++K+ +PS GLD+S+LT +LVPPEM++E D+ W+FDTLLQ VTQEF AE Sbjct: 115 GWGSPTKG---GEAEGKDEGKDADAEEETVTAAEEPTRRRKGLRDHEEDNDADVVMIIPDLDEEEAEDLTAQVAVAPKNLARRVQSLQQLDHEIKYTLPSGG-GLDLSILTASLVPPEMVQEADATWEFDTLLQEVTQEFTAE 253
BLAST of mRNA_C-linearis_contig104.917.1 vs. uniprot
Match: A0A1V9YYR3_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YYR3_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.090e-23 Identity = 69/168 (41.07%), Postives = 95/168 (56.55%), Query Frame = 1 Query: 172 NGVDGPPVKTVAGGWGLDASGLINSEAQSKS--TTHMVETQQ----KQIEGGSNRATRRNHFDN--EETEILVIPDLEDEGEE-DIVLKVAAAPKNTTRRVPSLRELDEDLKHAIPSSADGLDMSLLTKTLVPPEMLEEDDSPWDFDTLLQSVTQEFNAEKRVTLNAE 648 N + P V GWG++ SG + A S S ET++ K + G + HFD+ E TEI+ IPDLE+E E DI ++A AP+NTTR V SL+EL+ D+K+A+PS+ +D+ LLT L P + EDD PWDFD+LL+ V QE E N + Sbjct: 35 NADEKPMVTKRMSGWGVEGSGEATAVASSSSGGDQEPAETKRGRRRKDEKPGETAKPKNRHFDDDGEATEIVEIPDLEEEEREPDITTQIADAPRNTTRVVQSLKELERDVKYALPSTG-SIDLQLLTSFLCPQRAVIEDDDPWDFDSLLRDVFQEVQKELEEKENQD 201
BLAST of mRNA_C-linearis_contig104.917.1 vs. uniprot
Match: A0A1W0A1C3_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A1C3_9STRA) HSP 1 Score: 102 bits (254), Expect = 4.860e-23 Identity = 69/173 (39.88%), Postives = 104/173 (60.12%), Query Frame = 1 Query: 172 NGVDGPPVKTVAGGWGL--DASGL--INSEAQSKSTTHMVETQQKQIEGGSNRATRRNHFDNE--ETEILVIPDLEDEGE-EDIVLKVAAAPKNTTRRVPSLRELDEDLKHAIPSSADGLDMSLLTKTLVPPEMLEEDDSPWDFDTLLQSVTQEFNAE-----KRVTLNAEGG 654 NG + P V GGWG+ D++G N+ Q + T ++++ +G + ++ R HFD++ TEI+ IPDLE+E DI ++A AP+NTTR V SL+EL+ D+K+A+PS+ +D+ LLT L P + E+D PWDFD+LL+ V QE E + L+A GG Sbjct: 30 NGDEKPVVAKRMGGWGVEGDSAGANPANNTDQEPAETKRGRRRKEESKGETTKSKNR-HFDDDGDTTEIIEIPDLEEEERVPDITTQIAEAPRNTTRVVQSLKELERDVKYALPSTG-NVDLQLLTSFLCPQRAVMEEDEPWDFDSLLRDVFQEVQKEIDEKENQDELDANGG 200
BLAST of mRNA_C-linearis_contig104.917.1 vs. uniprot
Match: A0A8K1CAM6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CAM6_PYTOL) HSP 1 Score: 95.1 bits (235), Expect = 3.980e-20 Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 1 Query: 310 SNRATRRNHFDN--EETEILVIPDLEDEG-EEDIVLKVAAAPKNTTRRVPSLRELDEDLKHAIPSS-ADGLDMSLLTKTLVPPEMLEEDDSPWDFDTLLQSVTQEFNA---EKRVTLNAEG 651 S+ + HFD+ E T+I+ IPDLE+E E+DI +++A APKNTTR V SL+ELD D+K ++P++ A G+D+SLLT L P + + E D W+FD LL V+QE EK L A+G Sbjct: 99 SDSKAKNRHFDDDQESTDIVEIPDLEEEEREQDITMQIADAPKNTTRSVQSLKELDRDIKFSLPTTVAFGVDLSLLTSCLCPEKAVIESDETWNFDGLLNEVSQEMQKDLDEKEEMLKADG 219
BLAST of mRNA_C-linearis_contig104.917.1 vs. uniprot
Match: A0A024TT05_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TT05_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 5.330e-20 Identity = 51/111 (45.95%), Postives = 78/111 (70.27%), Query Frame = 1 Query: 325 RRNHFDN--EETEILVIPDLEDEGEE-DIVLKVAAAPKNTTRRVPSLRELDEDLKHAIPSSADGLDMSLLTKTLVPPEMLEEDDSPWDFDTLLQSVTQEFNAEKRVTLNAE 648 + HFD+ E TE++ IPDLE+E E DI ++A AP+NTTR V SL+EL+ D+K+++P++A G+D+++LT L P + ++EDD WDFD+LL+ V Q+ E+ N E Sbjct: 91 KNKHFDDDGEATELMEIPDLEEEEREPDITTQIADAPRNTTRVVQSLKELERDVKYSLPTTA-GVDLTILTSFLCPQKAVQEDDDAWDFDSLLRDVFQDVQKEQEEKDNQE 200 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.917.1 >prot_C-linearis_contig104.917.1 ID=prot_C-linearis_contig104.917.1|Name=mRNA_C-linearis_contig104.917.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=251bp MSSKWALDDDDGKDEGGNGSPLTPNSPPSEQKEVAGGRRSRRPRPGQADAback to top mRNA from alignment at C-linearis_contig104:498435..500459+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.917.1 ID=mRNA_C-linearis_contig104.917.1|Name=mRNA_C-linearis_contig104.917.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2025bp|location=Sequence derived from alignment at C-linearis_contig104:498435..500459+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:498435..500459+ >mRNA_C-linearis_contig104.917.1 ID=mRNA_C-linearis_contig104.917.1|Name=mRNA_C-linearis_contig104.917.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at C-linearis_contig104:498435..500459+ (Chordaria linearis ClinC8C monoicous)back to top |