mRNA_C-linearis_contig104.913.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.913.1 vs. uniprot
Match: D8LEF4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF4_ECTSI) HSP 1 Score: 717 bits (1851), Expect = 2.260e-213 Identity = 940/2292 (41.01%), Postives = 1077/2292 (46.99%), Query Frame = 2 Query: 29 MEEGGPSMPAG-SSGRGQILPNPATDSFKDDIQAIGRAVERLRDGFVGADSSSPKPTPTHDSSQ-SGGFVSSSYASGGGCRSAGKRGGAGSGGLPATILTERSQKAYSSLSSARGGGSGSLVGGGTTPVESSMGNSNGRLSLRELRSADEARKFYADERARATVDTAGDHRDAAAVGMALASGEKAPTSI-----------GSSTGSRNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDTPRGAPEE----GQLRLQGD-QGSLLTSDGETPAAG-----SPGRRG---------GEGWKHEVRDRSQKEACSNGRNGSCGSAAAAREQGSEEEGSAGEAGGVVPAESGSLFELRDALRSREKELLRLERDVSVVASSAGGFNRLAASLGSSNTNNAGTGQRRSFAFDH---------------------RGDAEEDGDRSGSRSGAPGASYLFSSGGLGGADGASGSGSGLLLPRHSVESSLAGTSASHLTTASMAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAPVAVSGSPLVASAHEGLRQMRVMLEQRAVEAERAKDDSKNMTASLNDVSARLRRSERRRAAQATELAEARAAADAAKSELSRALARHRAKEKRXXXXXXXXXXXDKKKESEAAAREAREKKAVSDGFLADPARQRQLFERDAEISRLRDRLEAAAGELSEEQGTTASLRTRLESSEREAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRTAE--EEGRRHAREATRARESLRVERGGKARLALELEAAVRERTQAVEKLAAAEAEAGRLH-VKLSAASTAAEDIXXXXXXXXXXXXXXXXXXXXXANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASEARRKVQEEEVALVRKQVSRLDAKIEEDMIREKAKSDATAEATAAGAERESDSLRASL--------------------------------RQTEAELLASRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMAAQASRQDKDTLKRGLVASQTACAELRAERSRLLSELEHAASSAAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLKRQAE-VSEREHRTSVVVAGQVSHAARGRAXXXXXXXXGDEE------------RARLQEALRGSCRVMGRVATALSAAADDGTGSPRHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAFSVDGH-SGAGDGGDGGHRRYVVGSSFGDSSDGGDEGSTGDEARRVVSRSEVREVSERLRFEASRLLGVRADEQRAAEDKKARLRQDLRDSESREAEAAARLEESRELSREQTGFVEGVWKERRRLESELDDRREEVDRLRASEDAARAAAAVLDGKVEDMSAALRQEKARAKREAEAAVAAEARDAVEALRRQLDDLRKEVDRTKSDQLDDGGGGVRGRGSNPDGAASGLPAADGAGQPRGVRRKGESSAAAAVGGVVASPTSPPSLAVLEAEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFQGALEALKLSQELLLRIHRQRQGHHHGTDTNNV-----PATASDPSNT-TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRPGVEARAS-STDAHVHELAAQASKLRGMSGNVKRLLEIAAGEVQGALEDTRGSLGVAAAXXXXXXXXVAGTQTHQESGGPTKEEVDALKQQLRDATAAARALEVDKSRLDGELGTAVGELARVQGLLREKAAEALVLEAQVARLEAEGRETREALSAA-DDRLAGTEATEAQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVXXXXXXXSRSQERARLAAEASAAELRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEAELDRQVKITGAARVATRAAEGAAAAAHAREGMGRERRELGEKSGRLEGPVQQQEVSRLKESLEREAERRGQLEKECKVLAARATDLEAALISASSEVRKAAKLAAERGARFERDATALSEETARLK----AXXQXXXXXXXXXXXXXXXXXXXXXXXXXAVAVAEAAERARREGTKDEQXXXXXXXXXXXRDCAALRKEMSETTGTLEAETTLRARAAQELSAHRRRVEELEAALEREKATARAASEVARKAASDSPMSQLQAEMRSVISSLE 6562
MEE P +P+ ++G G +P DSFKDDIQAIGRAVERLRDGF G DSSSP P P HDS+Q GG SS ASG G S G G GG P L S+ L AR G SG G T+ +E + S+GRLSLRELRSAD++R Y+DERAR D AGD A A GE A T G S+GS +S D GA E G LRL+GD + SL T+ T +A SP R G+G R ++ +G G+A A E G AESG LFELRDALRSRE++LLRL+RDVSVVA+SA GF L+ASLGS N + SF+F G A G GSR+G G + GA G G+LL R +S+L GT+ S T A+ XXXXXX G A +A SGSPLVASAHEGL++MR +LEQRA+E RA DDSK M SLNDVSARLRRSER+R AQA ELA+ XXXXXXXXXXX K + AAR G LA+ A++ RLRDRLE A GE +S++E XXXXXXXXXXXXXXXX +AE A AEAEAGRLH V+ S+ AE ANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASEARRKVQEEE++LVRKQVSRLDAKIE DM R KA SDATA ATAAGAERE++SLRAS R+ EAEL AS + XXXX AA+A++ DKDT LSELEHAA+SAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RLKR+ + VS+RE + G V +AR + G ++ R LQEALR SC VM R+A+ALSAAA D S R G XXXXXXXXXXXXXXXXXXXXXXXXXXXX RAFSVD + SG GD + FGD ++ G EG + RRVVSR+EVREV+ERLRFEA+RLLGVR +E++AA D A LR+DLRDSESREAE ARLEESRELSREQTGFVEGVWKER RL +RLRASEDAAR AA VLDGKV D+SAALRQE+ARAKREAEAAVAAEARDA+EALR+QLDDLRK E EFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREF+GALEALKLSQELLLRIHRQRQ + T+ PA A P + RP A +S STDAHVHELAAQASKLRGMSGNVKRLL++AAGEVQGALEDTR SLGVA A GTQT + GPT+ EV+ L+QQ+ A +A E +K RL GEL AVGEL ++QGLL +K +EA+VLEA VARLE E E REA SAA +D LA EA L EV +RSQERARLA AELR LEAEL RQ K AARV + E R L +SGR E RE ERR ++E+ECKVL AR DLEAAL ++E++KAA E GA ER+ L EE RL+ A + X A +A+A E+ +G +E RD AALRKE+SE+T +LEAALE KAT A S MS L+AEMRSVI+SL+
Sbjct: 1 MEEDRPWVPSSDNAGSGAGRASPLNDSFKDDIQAIGRAVERLRDGFAGTDSSSPAPAPGHDSAQWDGGLSSSMLASGPGDESGRPSSGDGVGGQP--TLGNNSRPLVRELLPARAGVSGIFAEGDTSVLERTR-YSDGRLSLRELRSADKSRTHYSDERARPRPDDAGDQSTTAVAAAAEGGGEMAGTGTQVSDQEGLFNKGGSSGSTHSGSTSRRRANDVGGPSSPGGAQREQSLVTPVLTPDVGEKDDGRGPGARGETQAVGLLRLRGDREPSLPTAVSRTASAEPLLLLSPLIRSSTSASVLGSGDGAWESFRREHSASGDNSSSSGDAGTAVAGTEDGMP-----AAXXXXXXAESGPLFELRDALRSREEDLLRLKRDVSVVATSARGFRHLSASLGSGNVERSS-----SFSFQRSRGHGKDASGANTDDSDLPSGNGSAFRGGGSDGSRAGGAGVDKINEEAFRPHHGGAVG---GVLLRRQPADSALPGTALSFRTAATPG------RPSDNELASSRRLXXXXXXQQGSTATVSKGNAIIAASGSPLVASAHEGLQRMRAVLEQRALEVGRAHDDSKEMANSLNDVSARLRRSERKRNAQAAELAKX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSKDATAARXXXXXXXXXXGSLAETAQRXXXX--XXXXXRLRDRLETATGEXXXXXXXXXXXXXXXXASDKETRRARERAAAAEEEAGAATAXXXXXXXXXXXXXXXXAERAQREAEASAELXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAXAEAEAGRLHSVRRERDSSVAE----------------------VANLTAALVLAREGQEAERGRFDRESKRAAALGEELVASEARRKVQEEEISLVRKQVSRLDAKIEGDMSRVKANSDATARATAAGAEREANSLRASXXXXXXXXXXXXXXXXXXXXNADASLKAELAAAREAEAELAASEARAKXXXXR---------------------------------------AARAAQLDKDTXXXXXXXXXXXXXXXXXXXXXXLSELEHAATSAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAFVRARKDLEGRLALAVAEAAESRAEAQ------------------------RLKRKLQAVSDREDGGTPAGLG-VGFSARTKRRNGGGGTRGKDDDYLFGLDGDRPHREGLQEALRESCGVMERIASALSAAAADRRTSRRPGSDGGSELDDPRWAFGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------RAFSVDSNRSGVGD-------ADLRQDGFGDCAESGGEGH---DLRRVVSRAEVREVAERLRFEAARLLGVRKEERKAAGDTVASLRRDLRDSESREAEVTARLEESRELSREQTGFVEGVWKERHRLXXXXXXXXXXXERLRASEDAARTAATVLDGKVADLSAALRQEQARAKREAEAAVAAEARDAMEALRQQLDDLRK-----------------------------------------------------------------------EGEFQRLRAKYEKAKGRIVALEELVAASRRVSAQARREFKGALEALKLSQELLLRIHRQRQNNAVADPTDTATPTTHPAAAPAPKHHHQPDAATRESHPGAPDETPSAAPADLAATAGERPTSAATSSLSTDAHVHELAAQASKLRGMSGNVKRLLQLAAGEVQGALEDTRDSLGVAGAAAA-----TVGTQTAEGLDGPTRGEVECLEQQVVRMKAEGQAREAEKLRLSGELSAAVGELTKIQGLLEDKMSEAVVLEAHVARLETERNEAREAASAAANDGLA---EAEASLSDTQARLEAALATQRELRSRCAELSLASGAFASEVAKQKEERARSQERARLAT----AELRDLSAKFSRASKTAAADAAAERDRLERELVATRAEARDIDTDVAQVLDALASSEKERRRLEAELHRQTK---AARVQRQQGE---------------REALEVESGRKE----------------RETERREKVERECKVLEARTGDLEAAL---AAELKKAA----ETGAVHEREVAGLREEATRLRESLQAEMERERGKWQAEQKAMXEEIMLAREDDKASWIAKATEQGYEKGKAEEHHRTARSREREQRDLAALRKELSESTXXXXXXXXXXXXXXXXXXXXXXXXXQLEAALE--KATG----------ADRSSMSHLKAEMRSVITSLD 2019 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.913.1 >prot_C-linearis_contig104.913.1 ID=prot_C-linearis_contig104.913.1|Name=mRNA_C-linearis_contig104.913.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=2482bp MEEGGPSMPAGSSGRGQILPNPATDSFKDDIQAIGRAVERLRDGFVGADSback to top mRNA from alignment at C-linearis_contig104:472041..485351+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.913.1 ID=mRNA_C-linearis_contig104.913.1|Name=mRNA_C-linearis_contig104.913.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=13311bp|location=Sequence derived from alignment at C-linearis_contig104:472041..485351+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:472041..485351+ >mRNA_C-linearis_contig104.913.1 ID=mRNA_C-linearis_contig104.913.1|Name=mRNA_C-linearis_contig104.913.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=14892bp|location=Sequence derived from alignment at C-linearis_contig104:472041..485351+ (Chordaria linearis ClinC8C monoicous)back to top |