Homology
BLAST of mRNA_C-linearis_contig104.908.1 vs. uniprot
Match:
A0A6H5KNQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ7_9PHAE)
HSP 1 Score: 296 bits (758), Expect = 3.520e-91
Identity = 167/217 (76.96%), Postives = 175/217 (80.65%), Query Frame = 1
Query: 16 MKSKNSSSSSESYFRAQYESACKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAGTAPMSTSPSPA---PAVASSGHVNEMKSEVRPPSRAVFDPRVGLATAHLDSLSLMGGXXXXXXXXXXXXXXXXXVATGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQVACLEGHRQLISDLCWAPDGRSLLSASFDQV 657
MK KNSSSSSES+FRAQYES CKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAG+AP S S +PA P ++ G+V PPSR VFDPRVGLATAHLD+L LM G A GRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYP+SQVACLEGHRQLISDLCWAPDGRSLLSASFDQ
Sbjct: 1 MKGKNSSSSSESFFRAQYESVCKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAGSAPASASLAPAAARPGASTGGNVTG------PPSREVFDPRVGLATAHLDALGLMNGGGIGVGSSGSGF------AAGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPYSQVACLEGHRQLISDLCWAPDGRSLLSASFDQT 205
BLAST of mRNA_C-linearis_contig104.908.1 vs. uniprot
Match:
D7FIJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ7_ECTSI)
HSP 1 Score: 151 bits (382), Expect = 9.250e-41
Identity = 96/147 (65.31%), Postives = 103/147 (70.07%), Query Frame = 1
Query: 16 MKSKNSSSSSESYFRAQYESACKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAGTAPMSTS---PSPAPAVASSGHVNEMKSEVRPPSRAVFDPRVGLATAHLDSLSLMGGXXXXXXXXXXXXXXXXXVATGRVLVAEAKL 447
MKSKNSSSSSES+FRAQYES CKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAG+AP S S A+ G+V PPSR VFDPRVG+ATAHLDSL LM G + GR+LVAEAKL
Sbjct: 1 MKSKNSSSSSESFFRAQYESVCKERDALQGTIEAQERDIDELKKSVYELSYMLSMQGSAGSAPASASLXXXXXXXXAATGGNVTG------PPSRKVFDPRVGIATAHLDSLGLMNGGGIRVGSNGIR------IPAGRILVAEAKL 135
BLAST of mRNA_C-linearis_contig104.908.1 vs. uniprot
Match:
A0A835YSR1_9STRA (WD40-repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR1_9STRA)
HSP 1 Score: 102 bits (253), Expect = 1.000e-21
Identity = 71/161 (44.10%), Postives = 80/161 (49.69%), Query Frame = 1
Query: 121 ERDIDELKKSVYELSYMLSMQGSAGTAPMSTSPSPAPAVASSGHVNEMKSEVRPPSRAVFDPRVGLATAHLDSLSLMGGXXXXXXXXXXXXXXXXXVATGRVLVAEAKLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQVACLEGHRQLISD 603
ER+ +ELKKSVYELSY+LS Q S G A S ++ PPSR P +AH S A R L KL GHTAAVY FSP +LVAS GFDRT+RLWEG YP SQVACL HRQL+SD
Sbjct: 2 ERENEELKKSVYELSYVLSTQTSTGAAAKVFS------------LDGADRAPPPPSRPGHPPSPFKVSAHAHGAS---------------------AAPDRRLNPAGKLVGHTAAVYAVAFSPCGNLVASGGFDRTVRLWEGGYPHSQVACLAEHRQLVSD 129
BLAST of mRNA_C-linearis_contig104.908.1 vs. uniprot
Match:
A0A1V8SS61_9PEZI (Uncharacterized protein n=4 Tax=Rachicladosporium TaxID=470018 RepID=A0A1V8SS61_9PEZI)
HSP 1 Score: 61.2 bits (147), Expect = 1.190e-6
Identity = 34/104 (32.69%), Postives = 54/104 (51.92%), Query Frame = 1
Query: 442 KLSGHTAAVYVAKFSPRDSLVASAGFDRTLRLWEGAYPFSQVACLEGHRQLISDLCWAPDGRSLLSASFDQV*GFLTARLCTGEQSRAG*SRAEQSRCCLVMDR 753
+++GH+A ++ A+FSP + +ASAG DR + LW + + L GH+ + DL W+ D + + SAS D + + TGE+ R E C V R
Sbjct: 55 EMTGHSAEIFAARFSPSGAHIASAGADRDILLWHSSGDCANYGTLVGHKSAVLDLHWSRDSQVIYSASADMH--IASWNVETGERIRRHVGHEEVINCIDVSKR 156
BLAST of mRNA_C-linearis_contig104.908.1 vs. uniprot
Match:
A0A7S1NRB8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NRB8_9EUGL)
HSP 1 Score: 52.8 bits (125), Expect = 8.370e-5
Identity = 30/63 (47.62%), Postives = 38/63 (60.32%), Query Frame = 1
Query: 466 VYVAKFSPRDSLVASAGFDRTLRLWEGAY-PFSQVACLEGHRQLISDLCWAPDGRSLLSASFD 651
+Y A FSP SL+A G+D + LW GA + L GH +S L +APDGR+LLSAS D
Sbjct: 2 IYGADFSPDGSLLALGGWDGRVSLWGGANGALCLLRTLTGHTGFVSALAFAPDGRTLLSASGD 64
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.908.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 5
0 1 Expect = 3.52e-91 / Id = 76.96 Expect = 9.25e-41 / Id = 65.31 Expect = 1.00e-21 / Id = 44.10 Expect = 1.19e-6 / Id = 32.69 Expect = 8.37e-5 / Id = 47.62 Sequence A0A6H5KNQ7_9PHAE D7FIJ7_ECTSI A0A835YSR1_9STRA A0A1V8SS61_9PEZI A0A7S1NRB8_9EUGL back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 85.1 Seed ortholog evalue 4.3e-14 Seed eggNOG ortholog 4787.PITG_02135T0 Hectar predicted targeting category other localisation EggNOG free text desc. mRNA splicing, via spliceosome EggNOG OGs KOG0282@1,KOG0282@2759 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 5 Model size 1264 Cds size 645 Stop 1 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927388.5392337-UTR-C-linearis_contig104:448975..448990 1622927388.5392337-UTR-C-linearis_contig104:448975..448990 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 448976..448990 + 1690879670.8607657-UTR-C-linearis_contig104:448975..448990 1690879670.8607657-UTR-C-linearis_contig104:448975..448990 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 448976..448990 + 1622927388.6072693-UTR-C-linearis_contig104:452004..452608 1622927388.6072693-UTR-C-linearis_contig104:452004..452608 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 452005..452608 + 1690879670.9314811-UTR-C-linearis_contig104:452004..452608 1690879670.9314811-UTR-C-linearis_contig104:452004..452608 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig104 452005..452608 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927388.550304-CDS-C-linearis_contig104:448990..449064 1622927388.550304-CDS-C-linearis_contig104:448990..449064 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 448991..449064 + 1690879670.872212-CDS-C-linearis_contig104:448990..449064 1690879670.872212-CDS-C-linearis_contig104:448990..449064 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 448991..449064 + 1622927388.5591464-CDS-C-linearis_contig104:450047..450141 1622927388.5591464-CDS-C-linearis_contig104:450047..450141 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 450048..450141 + 1690879670.8820896-CDS-C-linearis_contig104:450047..450141 1690879670.8820896-CDS-C-linearis_contig104:450047..450141 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 450048..450141 + 1622927388.5707881-CDS-C-linearis_contig104:450675..450745 1622927388.5707881-CDS-C-linearis_contig104:450675..450745 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 450676..450745 + 1690879670.9009569-CDS-C-linearis_contig104:450675..450745 1690879670.9009569-CDS-C-linearis_contig104:450675..450745 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 450676..450745 + 1622927388.5832322-CDS-C-linearis_contig104:450987..451181 1622927388.5832322-CDS-C-linearis_contig104:450987..451181 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 450988..451181 + 1690879670.9100204-CDS-C-linearis_contig104:450987..451181 1690879670.9100204-CDS-C-linearis_contig104:450987..451181 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 450988..451181 + 1622927388.595297-CDS-C-linearis_contig104:451791..452004 1622927388.595297-CDS-C-linearis_contig104:451791..452004 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 451792..452004 + 1690879670.92053-CDS-C-linearis_contig104:451791..452004 1690879670.92053-CDS-C-linearis_contig104:451791..452004 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig104 451792..452004 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.908.1
>prot_C-linearis_contig104.908.1 ID=prot_C-linearis_contig104.908.1|Name=mRNA_C-linearis_contig104.908.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=215bp
MKSKNSSSSSESYFRAQYESACKERDALQGTIEAQERDIDELKKSVYELS back to top mRNA from alignment at C-linearis_contig104:448976..452608+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig104.908.1 ID=mRNA_C-linearis_contig104.908.1|Name=mRNA_C-linearis_contig104.908.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3633bp|location=Sequence derived from alignment at C-linearis_contig104:448976..452608+ (Chordaria linearis ClinC8C monoicous)GCTATCTAGGCCTCA ATGAAGAGCAAGAACAGCTCTTCCTCCTCTGAGAG
CTATTTCAGGGCTCAGTACGAGAGTGCGTGCAAGGAGAG GTGAGCTCGAT
TCAAAGGGTGATGGATGTGGGTGTTGGGGTACACACGTTTGTGTGACGAT
ATATATATCCAGCGCGCAATGATCCGCGTTTTATGTTGATACATAGATCG
AGAGGCCTACTTTGCTGGAGACAATGGTGGCGCCTGTATGATTGTGTGGT
AGAAAGGGAGGAGGAACGTGTGTGAAAAACGCTTCTGCTGCAGGGTGCGT
GTTGGGTTAGCTGCTTAGACCACAGACGCCTCTTCGTGTTTGATTCTGGT
GGAGGTAGTAATTCTTCTGTAATCCTTCGGATTGCCTTCGTATTGCAATG
GTTGAGAGCTCTTCCTCGGGCTGCGGTCGATGTACGATGTGCACACAACA
TGTGCAGCAGGGCCATGAATCTTTGGTCAGGACATCTGGCCGAAGGAGAG
CTCTGGGCCATTGGTGTTCTTGCATTCTCCAATGTGACCGGCGGCCAATA
GCTACTTTCCATTCAGTGCTGCTGCTGCTGCCTGTGATGTTCAAAACAAC
CCTAGTAGGTGGAAACGTAAATGTACCGCTCGCCGGCATGCCACGATTTG
TGTTTGATACCAGACCGTGGGCTATTATCATGTTGGGAAATTGAGTGGCA
TGATGCACATTTCACTGACGATGGACACGATATGCAATACAGACGCTGTC
GGTGGCCCGGGGCCACTGCTGGTGCCGCAAGGAAATGTCTTGTGTGTAGC
ACATGTGCACCCAAACTTCTACAGGTTAGATCTAGTCTTGAATAACTCGA
TCTCGAGAGAAAAAAAGAGGAAGCAAGCAGCAGGGCTGTTCTCGACAGTT
GACTTCACTTTCAGGTGACCAAACAATGTGGGCGACTACATTCTCGCATG
AACTGCGGCAGCTGTTTCCATCGTCCATTTCTCGGAGCCCCCCCCCCGTC
TATCTGTCCTCGTCCACACGTCCTACGCTGCTGCTGATATACACCACTGC
TGCTGTATGATGCGTTGCACAGGGATGCGCTTCAGGGCACAATCGAGGCG
CAGGAACGAGACATCGACGAGCTCAAGAAGAGCGTCTATGAGCTGTCCTA
CATGCTCTCCATGCAG GTCAGTCTAGGTGTAGACTACCGGTACATACTAA
GTACAACAGCTGCTTGATTGTTTGGTGGTGGACTTTCTCTGGGTGTCATC
CCATCACTCATCTTTCACATTGCCCCGCCCATTACAAGTAGAGACTAAAG
AGGGCGGGCCGAAAGCATGGTCGCCGGGTGCCACTAAATTCGGGATGCTA
AACCCGGACTGCTGTAGGGTGCGGATTGGAAGGAGCACACGCACACATGC
CTTCCTCGCTGCAAACAAACGTGTTTCCCGTGTTTTTGTCTGGTGTGGCT
CTGATTTTGACATTTTGACGCGCACCATCATGGTCAGAAAACAGATGACG
ATGCCGACTATTTACTGCTGTAGGTGAGCCGCAAAAGCTCTACAACGACA
ACGAGGACCCTCTGCTGCTGTGTCTGACCGTGTTTGGACCGTGCCGTCTC
CCTCCGATATTCAACACGCGCCCTGGGCGCAATCGACAACACAATCACCA
CCAACAACAACAACAACTACCACGAAACCGATGAAACCGATGAAAAAAAG
GGGAGCGCGGGCACGGCCCCGATGTCGACGTCGCCAAGCCCTGCCCCGGC
GGTAGCAAGTTCGGGACACG GTGAGTAGGAGTAGGAGTAGGAGTTTGAGA
ATGAGGGCTAGGAGCGTGCATATACCCGAACACGGTTGCTTCATCTGTCG
CTGCTGCAGGGGGCCCCGCGAACAAGCAGAACAAGACAACAAACCTCCCC
GTCACCGCCGCTCGAAATTCCCCAGCCCCCCCCCACCCCTTCCCGAAAAT
AAATCTCATGAGGGCACACCACTCAACTATACTACACCACGTTTTACGTT
TTCTCATCACAGTAAATGAAATGAAATCAGAGGTGCGGCCGCCAAGCCGT
GCGGTGTTCGACCCCCGGGTCGGCCTGGCGACGGCCCACCTCGACTCGCT
GAGCCTCATGGGCGGCGGCGGCATGGGCGTGGGCGTGGGCGTCGTCGGCG
GCGGCGGCGGGGGCGGCGTGGCGACCGGCCGCGTCCTCGTCGCGGAGGCC
AAGCTG GTGAGCGCAAGGCAAAGGAAAGGAAGAAGCACGTAGAAGTGAAC
ATGACTGCTGACTACGTGATTCGTGTAGTGTCACCCTGTGGTCGACCCGC
TGCTAGTGTGGCGTTATCAGACGGCCACCCACGACCCACGCCCTGGCCGG
CCGGGGCATTACAGATGGAGCCAGCAGCTATTGACAGCGGCATCAAAGTC
TGGAGCGTGTTTTTGCTGGGACGTGTGTAGGTCACCGTCGTTTCCCCTTC
GTCGAGAAGGCTCAGGCCAGGTTTGGTTCGGAAGCGCGTGTTTTTGTTGT
TCCTGGTTGACGCAACCACACTGGCGCTGGCTGCCCTCTGCGAAAGGAGC
TACCACCGCGGGCCCGGCCCAACCCTTGACCCCCCGTCTTTATAGCTCTC
AAAAAAGCTCAACGCTTAAATGGCTTTGCCGTGAGTTTCCTTCCTTCCTT
CCTTCCTTCCTTCCTTCCTTCCTGTTCGCCGCCAGCATCGGCACCCGCTA
TACGTTGTTCATCCCTCCTCGCCCCACCTCACGCGCACACATTTATCGAT
GGTTGTATGTGCACCACCTCCTCTCCGCCGCCGCCCCGCCTTTCCCGTTT
GCCTTGCCTAACCCAGTCGGGGCACACGGCGGCCGTGTACGTGGCCAAGT
TTTCCCCGCGAGACAGCCTCGTGGCCTCCGCGGGGTTTGATCGCACCCTC
AGGCTGTGGGAGGGCGCCTACCCTTTCAGCCAGGTGGCGTGCCTGGAGGG
CCACCGGCAGCTGATCAGCGACCTCTGCTGGGCCCCCGATGGGAGATCGT
TGCTGAGCGCCTCCTTTGACCAGGTTTAG GGTTTCTTGACTGCTCGTTTG
TGCACAGGAGAGCAGAGCAGAGCAGGGTAGAGCAGAGCAGAGCAGAGCCG
GTGTTGCCTTGTTATGGACAGGGTCTTCTGTGTCGGAGGTGGACACACAC
GATTGCTGAGCTTTGCTCCGGCGCTGTTGGCTACCGTTGATGGCCTTTTT
TGTGTGACTGCTTTCGCGAGCACGACCACCGCCGTGGCTGCTCTGGAAAC
CAAGCTTTTTGTCGAGACGACGAAACACGCGCGGCTCCCTTCGCCTCCCC
TCACCCACCGCGCATCCTTCCTTGTACATGCCACATCTTCTGCGGAGTAG
TACTCCGTATAAAACAAAAAAGAAAAGCAGAAAAAAAAAAGAAAAAAAAA
CGCATTCGGTGTTTTGGACGAAACGGACAAAGTATCACCAACACTTTTGC
TCAGCAAGCTGTAGAAGACACACCTAAAACCATCCCCATTCTTGATGCCT
TGTCAAAAAACCATACCCGCATCTACCACCGCACCTACCATCGCACCGCA
CCTACCACATCCCATCCCATCCCAGACCGTCGCGAAGTGGGACACCGAAA
CGGGGCAAAGGGTGGGCAACATGCTCTCCCTCG back to top Coding sequence (CDS) from alignment at C-linearis_contig104:448976..452608+
>mRNA_C-linearis_contig104.908.1 ID=mRNA_C-linearis_contig104.908.1|Name=mRNA_C-linearis_contig104.908.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at C-linearis_contig104:448976..452608+ (Chordaria linearis ClinC8C monoicous) back to top