mRNA_C-linearis_contig104.907.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig104.907.1 vs. uniprot
Match: D7FIJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ8_ECTSI) HSP 1 Score: 931 bits (2406), Expect = 0.000e+0 Identity = 552/770 (71.69%), Postives = 612/770 (79.48%), Query Frame = 3 Query: 516 GTEAWHKPDETAKDAPIPPRSDAGPKGRLPRSYATERWDCPPLFRPVRVPSDP-TDSDGVSLDELLAGEYTDALVSSYLVDAKFLLDTAPRLKTVPFLLIQGLKEEKQLVINMKAYLAREHPQAVVYLPKTVHIGLHHSKITLLKYKTGLRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPPAQKTRGXXXXXXXXXXXR--GADG-----DEPXXXXXXXXXXXXXAEGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVITSEFEEILTDYFEHVGGPAVEWARSLAAYDFSAANVTLIPSVPGRHHGKNLHKYGHMRVRRVLQREEVHVRPGSHRVSFQIAAIMNLSRRPYKWLGEMTESFMAEKASSNNGKDGMKLTSEVDYVSPEEAERXXXXXXXXXXXKKGDKPKKPLGQRKDPWGDKGILEKRQERAERREAIHRRNVLGLLPEKKPKPPKRLGKKAMXXXXXXXXXXXXXXALIKWVGKERQRNWFFDFLRIVWPTDEAVRMSNLGWESGAGMPCLTTSLYEGGYRKCDVNYHLNRVMEELKPILCTWTGGRGMNRHVTMPHLNTYYRYREIQRSDGSLKMSKDGLAYFLLGSHSLHRIAWGYLEHRNPTQRPRKRRVRMKPIYPPKPENTLPYKEEEVQLDIKSFDMGILFLPSKIPPKRSLPVDYDSDDSDDQAAVEAGGGDAAPA--PPPFSCDPEGVLSQKKRLSYRCPEVAPAPRLKTLPLGLLPIPQQLP 2795
GT +WHK D+ AK P P S +GR P+SY +ERW CPPLFRPVR+PSDP +++DGVSL ELL GEYT+ALV+SYLVDA+FLL+ APRLKTVPFLLIQG+KE+K LV++MKA+L REHP AVVYLPKT+HIGLHHSK+ LLKYKTG+RVVIMTCNMRPDDWGGRCQAAWYQDFPFKPP A K++G + GAD +EPXXXXXXXXXXXXX G + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VITSEFEEIL DYFEHVGGPA W RSL+AYDFS+ANVTLIPSVPGRH G++L++YGHMRVR VL REEVHVRPGSHRV+FQ A+IMNLSRRPYKWLGE+TESFMAEK SS +GK+G K ++D EE E X K ++PKKPLGQRKDPWGDKGILEKR+ERAERREAIHRRNVLG+LP KK XXXXXXXXXXXXX ALIKWVGKER+RNWF FLR+VWPT+EAVR SNLGWESGAGMPCLTT+LYEGGYRKC+ NY LNRVMEELKP+LCTWTG +GM+R MPHLNTYYRYRE+ R+DGSLKMSKDGLAYFLL SHSLHRIAWGYLEHRNP QRPRKRRVRMKPIYPPKPENTLPYKEEE QLDIKSFDMG++FLPSKIPPKR LP+D P PFSCDPEG L + + LSYRCP+ APA RLKTLPLGLLP+P QLP
Sbjct: 139 GTSSWHKVDKNAK-VPRPVVSSHDARGRRPKSYDSERWSCPPLFRPVRIPSDPASNADGVSLGELLGGEYTEALVASYLVDAEFLLNAAPRLKTVPFLLIQGIKEDKPLVVSMKAFLKREHPAAVVYLPKTIHIGLHHSKMILLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPRA-KSKGKEKARGKAGKRKRVGADAAPILDEEPXXXXXXXXXXXXXXXXGESGVAAADDAGGAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV----VITSEFEEILIDYFEHVGGPAAVWGRSLSAYDFSSANVTLIPSVPGRHKGRDLYRYGHMRVRAVLAREEVHVRPGSHRVAFQAASIMNLSRRPYKWLGEITESFMAEKTSSKDGKNGKKAIRDIDVGLAEEEEMRRKKXEQDERNKGKNQPKKPLGQRKDPWGDKGILEKRKERAERREAIHRRNVLGILPPKKXXXXXXXXXXXXXXXXXXXXXXXXXAALIKWVGKERKRNWFMKFLRVVWPTEEAVRTSNLGWESGAGMPCLTTTLYEGGYRKCETNYQLNRVMEELKPLLCTWTGAKGMDRGNAMPHLNTYYRYRELPRTDGSLKMSKDGLAYFLLASHSLHRIAWGYLEHRNPPQRPRKRRVRMKPIYPPKPENTLPYKEEEAQLDIKSFDMGVMFLPSKIPPKRPLPMDXXXXXXXXXXXXXXXXXXXXXXXXPAPFSCDPEGALFRLRPLSYRCPDQAPAARLKTLPLGLLPLPHQLP 902
BLAST of mRNA_C-linearis_contig104.907.1 vs. uniprot
Match: A0A6H5KBB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBB1_9PHAE) HSP 1 Score: 201 bits (510), Expect = 1.940e-54 Identity = 177/302 (58.61%), Postives = 192/302 (63.58%), Query Frame = 3 Query: 939 LLKYKTGLRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPPAQKTRGXXXXXXXXXXXR--GADG-----DEPXXXXXXXXXXXXXAEGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVITSEFE---EILTDYFEHVGGPAVEWARSLAAYDFSAANVTLIPSVPGRHHGKNLHKYGHMRVRRVLQREEVHVRPGSHRVSFQIAAIMNLSRRPYKWLGEMTESFMAEKASSNNGKDGMKLTSEVDYVSPEEAERXXXXXXXXXXXKKGDKPKKPLG 1814
LLKYKTG+RVVIMTCNMRPDDWGGRCQAAWYQ FPFKPP A K++G + GAD +EPXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXX VITSEFE EIL DYFEHVGGPA W RSL AYDFS+AN TLIPSVPGRH GK+L +RV+FQ A++MNLS RPYKWLGE+TESFMAEK NGKDG K ++D EE E K +KPKKPLG
Sbjct: 3 LLKYKTGVRVVIMTCNMRPDDWGGRCQAAWYQGFPFKPPRA-KSKGKEKARGKAGTRKRVGADAAPILDEEPXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXXXXXXXRKRVASDSEEDYPKEGXXXXXXXHDDVVITSEFEVGEEILIDYFEHVGGPAAVWGRSLFAYDFSSANATLIPSVPGRHKGKDL-----------------------YRVAFQAASVMNLSLRPYKWLGEITESFMAEKTGGKNGKDGKKAIRDIDVGLAEEEEVRMKTKEQDERNKGKNKPKKPLG 276
BLAST of mRNA_C-linearis_contig104.907.1 vs. uniprot
Match: A0A6H5KBK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK0_9PHAE) HSP 1 Score: 166 bits (419), Expect = 4.510e-44 Identity = 81/131 (61.83%), Postives = 98/131 (74.81%), Query Frame = 3 Query: 2535 MGILFLPSKIPPKRSLPVDYDSDDSDDQAAVEAGGGDAAP--APPPFSCDPEGVLSQKKRLSYRCPEVAPAPRLKTLPLGLLPIPQQLPAPHYEFSKIFGYRVVDRPWVWNRSISKKDIFGKTIQLAKEKR 2921
MG++FLPSKIPPKR P+DYDS+ +P PFSCDPEG L + + LSYRCP+ APA RLKTLPLGLLP+P QLPAP +E+S+ +GYRVVDRPWVWNR++ K DIFGKT+QLAKEK+
Sbjct: 1 MGVMFLPSKIPPKRPPPMDYDSEXXXXXXXXXXXXXXXXXXXSPAPFSCDPEGALFRLRPLSYRCPDQAPAARLKTLPLGLLPLPHQLPAPPHEYSRTYGYRVVDRPWVWNRNLPKPDIFGKTVQLAKEKK 131
BLAST of mRNA_C-linearis_contig104.907.1 vs. uniprot
Match: A0A1V9ZNZ3_9STRA (Tyrosyl-DNA phosphodiesterase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZNZ3_9STRA) HSP 1 Score: 108 bits (270), Expect = 3.010e-20 Identity = 94/371 (25.34%), Postives = 144/371 (38.81%), Query Frame = 3 Query: 564 IPPRSDAGPKGRLPRSYATERWDCPPL----FRPVRVPSDPTDSDGVSLDELLAGEYTDALVSSYLVDAKFLLDTAPRLKTVPFLLIQGLKEEKQLVINMKAYLAREHPQAVVYLPKTVHIGLHHSKITLLKYKTGLRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPPAQKTRGXXXXXXXXXXXRGADGDEPXXXXXXXXXXXXXAEGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVITSEFEEILTDYFEHVGGPAVEW-ARSLAAYDFSAANVTLIPSVPGRHHGK-NLHKYGHMRVRRVLQREEVHVRPGSHRVSFQIAAIMNLSRRPYKWLGEMTESF 1658
IP P P S + P+ FRP+ + +S +++LAGE+T A++++Y +DA++LL + RL+ VP LL G +++ MK + + V+ P + G HH+K+T+L Y +RV I T N DW + Q WYQDFP K T T+ FE+ L Y + +W A LA YDF+ A V LIPSVPG + ++HKYGH+R+++VL++ V +P V+ Q ++ +L+ WL E SF
Sbjct: 583 IPTPPPCKPLNETPTSVIISTYSLVPVILNWFRPM------PHENCISFNDILAGEFTHAILTNYKIDAEWLLKQSTRLEQVPVLLCHGGDQQR-----MKNAIGKRTNITVIAPPLPIPYGTHHTKMTVLFYSQFVRVAIFTANFLAGDWNDKTQGIWYQDFPLKEESTTSTA---------------------------------------------------------------------------------------------TNTFEQDLAGYLSSLHPKVADWCATKLALYDFNQAQVILIPSVPGTYSTPTDMHKYGHLRLKKVLEQNNVSKKPNQPVVA-QFSSFGSLNE---SWLMEFLSSF 845
BLAST of mRNA_C-linearis_contig104.907.1 vs. uniprot
Match: D8LE95_ECTSI (Tyrosyl-DNA phosphodiesterase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE95_ECTSI) HSP 1 Score: 90.1 bits (222), Expect = 8.860e-15 Identity = 49/116 (42.24%), Postives = 69/116 (59.48%), Query Frame = 3 Query: 1362 FEEILTDYFEHVGGPAVEWARSLAAYDFSAANVTLIPSVPGR-----------HHGKNLHKYGHMRVRRVLQREE-----VHVRPGSHRVSFQIAAIMNLSRRPYKWLGEMTESFM 1661
F+E L + VGGPA +A +L YDF A V L+PSVPG H G++LHKYGHMRVR +L RE+ ++ G H+V QI+++ +L++ P +WL E+ SFM
Sbjct: 224 FQEDLMGFLFKVGGPASAFASTLGEYDFRGARVALVPSVPGTGGNTPGTGGKPHKGRDLHKYGHMRVRALLAREKEDGTGAKLKEGGHKVLCQISSLASLTKTPNRWLSEILASFM 339
BLAST of mRNA_C-linearis_contig104.907.1 vs. uniprot
Match: A0A2Z7BX37_9LAMI (Tyrosyl-DNA phosphodiesterase 1-like n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BX37_9LAMI) HSP 1 Score: 86.3 bits (212), Expect = 1.900e-13 Identity = 88/368 (23.91%), Postives = 138/368 (37.50%), Query Frame = 3 Query: 612 YATERWDCPPLFRPVRVPSDP--TDSDGVSLDELLAGEYTDALVSSYLVDAKFLLDTAPRLKTVPFLLIQGLKEEKQLVINMKAYLAREHPQAVVYL--PKTVHIGLHHSKITLLKYKTGLRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPPAQKTRGXXXXXXXXXXXRGADGDEPXXXXXXXXXXXXXAEGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVITSEFEEILTDYFEHVGGPAVEWARSLAA-------------YDFSAANVTLIPSVPGRHHGKNLHKYGHMRVRRVLQREEVHVRPGSHRVSFQIAAIMNLSRRPYKWLGEMTESFMA 1664
+ + P F+ +RV P T+++ VS+ +++ G+ A++S+Y+VD +LL P +K VP +L+ + + L Y+ R P + P + G HHSK LL Y G+RVV+ T N+ DW + QA W QDFP+K P + RG FE L DY + P E+ +L A +D+S A V LI SVPG H G ++ K+GHM++R +LQ + +Q +++ +L KW+ E+ S A
Sbjct: 171 FQNSKDKLPLAFKLLRVKELPEWTNTNTVSISDVIRGDVIVAILSNYMVDIDWLLSACPTIKRVPHVLVIHGEGDGTL-----EYMKRNKPANWILHKPPLPISYGTHHSKAMLLIYPRGVRVVVHTANLIYVDWNNKSQALWMQDFPWKDP-SSANRGCG---------------------------------------------------------------------------------------------FESDLIDYLSVLKWP--EFNATLPAMGSFSINASFFKKFDYSCAVVRLISSVPGYHSGSSIRKWGHMKLRTILQECTFEKEFEKSPLVYQFSSLGSLDE---KWMAELASSMSA 434
BLAST of mRNA_C-linearis_contig104.907.1 vs. uniprot
Match: A0A833QL48_9POAL (Tyrosyl-DNA phosphodiesterase 1 isoform X2 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QL48_9POAL) HSP 1 Score: 82.0 bits (201), Expect = 3.340e-12 Identity = 87/370 (23.51%), Postives = 137/370 (37.03%), Query Frame = 3 Query: 645 FRPVRVPSDPT--DSDGVSLDELLAGEYTDALVSSYLVDAKFLLDTAPRLKTVPFLLI----QGLKEEKQLVINMKAYLAREHPQAVVYLPKTVHIGLHHSKITLLKYKTGLRVVIMTCNMRPDDWGGRCQAAWYQDFPFKPPPAQKTRGXXXXXXXXXXXRGADGDEPXXXXXXXXXXXXXAEGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVITSEFEEILTDYFE-------HVGGPAVEWARSLAAY----DFSAANVTLIPSVPGRHHGKNLHKYGHMRVRRVLQREEVHVRPGSHRVSFQIAAIMNLSRRPYKWLGEMTESFMAEKASSN----NGK 1691
FR +RV P+ +S+ V++ +++ G+ A++S+Y+VD +LL P LK +P +L+ G + L + ++ + P + Y G HHSK L Y TG+R+++ T N+ DW + Q W QDFP+K A G S FE L DY V P++ AA+ D+S A V LI SVPG H+G +L K+GHM++R +L+ + + +Q +++ +L KW+ E S A K NGK
Sbjct: 192 FRLMRVQGLPSWSNSNSVTIQDVIQGDVLVAILSNYMVDIDWLLSACPNLKKIPHVLVAHGESGAAFDHLLKNKLGNWVFHKPPLPISY-------GTHHSKAMFLVYPTGIRIIVHTANLIHVDWNNKTQGLWMQDFPWKD--ASTLTGNNR------------------------------------------------------------------------------------------SPFENDLVDYLAALKLPELRVSLPSIGNVSINAAFFRKFDYSRAKVRLIASVPGYHNGSSLTKWGHMKLRSILESCKFSKEFCKSPLIYQFSSLGSLDE---KWMNEFGSSLSAGKTDDGFPLGNGK 459
BLAST of mRNA_C-linearis_contig104.907.1 vs. uniprot
Match: A0A2D4BMS2_PYTIN (Uncharacterized protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BMS2_PYTIN) HSP 1 Score: 82.4 bits (202), Expect = 3.570e-12 Identity = 85/386 (22.02%), Postives = 128/386 (33.16%), Query Frame = 3 Query: 690 VSLDELLAGEYTDALVSSYLVDAKFLLDTAPRLKTVPFLLIQGLKEEKQLVINMKAYLAREHPQAVVYLPKT-VHIGLHHSKITLLKYKTGLRVVIMTCNMRPDDWGGRCQAAWYQDFPFKP-------------------------------------------------------PPAQKTRGXXXXXXXXXXXRG-----ADGDEPXXXXXXXXXXXXXAEGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVITSEFEEILTDYFEHVGGPAVEWARSLAAYDFSAANVTLIPSVPGRHHGKNLHKYGHMRVRRVLQREEVHVRPGSHRVSFQIAAIMNLSRRPYKWL-GEMTESFM 1661
V L +LL+GE++ L+++Y+ D +L + PRL VP +L+ G ++ + + + + + P+ + G HH+K+ ++ Y T +RV I T N P DW + Q W+QDF P G RG A +F+ L +Y +G P V + R L +DFS A V L+PSVPG H G KYGH+RVRR+LQ +V H + Q +++ +L KWL GE ES M
Sbjct: 506 VGLSDLLSGEFSRVLLTNYMYDLAWLFNECPRLADVPVVLVHGERDREAMQHDCRGFT-----NVTAVAPRLPIAYGTHHTKMMVVVYATKVRVAIFTANFIPIDWNNKTQGVWFQDFELATIGEDDEEDERKRADLGAVYAVGLSDLLSGEFSRVLLTNYMYDLAWLFNECPRLADVPVVLVHGERDREAMQHDCRGFTNVTAVAPRLPIAYGTHHTKMMVVVYATKVRVAIFTANFIPIDWNNKTQGVWFQDFELATIGEDDEEDERKRADLGAGAGVEPVVDFKRDLVEYLSTLGAPVVAFCRELERFDFSTATVALVPSVPGYHTGAAKDKYGHLRVRRILQ--HFNVPRSDHPLICQFSSLGSLDE---KWLFGEFAESLM 881
BLAST of mRNA_C-linearis_contig104.907.1 vs. uniprot
Match: A0A7J7NVW0_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NVW0_9MAGN) HSP 1 Score: 80.5 bits (197), Expect = 1.080e-11 Identity = 52/153 (33.99%), Postives = 78/153 (50.98%), Query Frame = 3 Query: 606 RSYATERWDCPPLFRPVRVPSDP--TDSDGVSLDELLAGEYTDALVSSYLVDAKFLLDTAPRLKTVPFLLI---QGLKEEKQLVINMKAYLAREHPQAVVYLPKTVHIGLHHSKITLLKYKTGLRVVIMTCNMRPDDWGGRCQAAWYQDFPFK 1049
R + + P F+ +RV P +S VS+++++ G T A++S+Y+VD +L+ P L+ +P +L+ +G QL N A P LP + G HHSK L + GLRVVI T N+ DW + Q W QDFP+K
Sbjct: 173 RHFRVTKEKLPLTFQLLRVQGLPPWANSSAVSIEDVIQGNVTVAILSNYMVDMDWLISACPTLRKIPHVLVVHGEGDGRLHQLQKNKPANWTFHKP----LLP--ISYGTHHSKAMFLVFPRGLRVVIHTSNLIHVDWNNKSQGLWMQDFPWK 319
BLAST of mRNA_C-linearis_contig104.907.1 vs. uniprot
Match: A0A8K1CIS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIS9_PYTOL) HSP 1 Score: 78.2 bits (191), Expect = 3.490e-11 Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = 3 Query: 1356 SEFEEILTDYFEHVGGPAVEWARSLAAYDFSAANVTLIPSVPGRHHGKNLHKYGHMRVRRVLQREEVHVRPGSHRVSFQIAAIMNLSRRPYKWL-GEMTESFM 1661
++FE L +Y +G P V + + L+ +DFS A V LIPSVPG H GK +HKYGH+RVR +L+ V P H + Q +++ +L KWL GE S M
Sbjct: 205 ADFERDLIEYLSTLGTPVVTFCKELSRFDFSTATVALIPSVPGAHTGKAMHKYGHLRVRALLK--HFAVAPSDHPLICQFSSLGSLDE---KWLFGEFAGSLM 302 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.907.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.907.1 >prot_C-linearis_contig104.907.1 ID=prot_C-linearis_contig104.907.1|Name=mRNA_C-linearis_contig104.907.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=835bp MPRRTQPVVERQGGAAGEGQQNAAGVEVPCVPGTEAWHKPDETAKDAPIPback to top mRNA from alignment at C-linearis_contig104:438613..448850- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.907.1 ID=mRNA_C-linearis_contig104.907.1|Name=mRNA_C-linearis_contig104.907.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=10238bp|location=Sequence derived from alignment at C-linearis_contig104:438613..448850- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:438613..448850- >mRNA_C-linearis_contig104.907.1 ID=mRNA_C-linearis_contig104.907.1|Name=mRNA_C-linearis_contig104.907.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5010bp|location=Sequence derived from alignment at C-linearis_contig104:438613..448850- (Chordaria linearis ClinC8C monoicous)back to top |