mRNA_C-linearis_contig104.903.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI) HSP 1 Score: 378 bits (971), Expect = 3.920e-125 Identity = 224/278 (80.58%), Postives = 241/278 (86.69%), Query Frame = 1 Query: 382 YVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXX-GGIATVIAVVLISIYSKRALNKVLEEDRLAHEAEELEAAGEAGDGLGGHSVAMDQSQQDGKRPAVVEHAIRVPV 1212 YVILDYTVPGLGFVAD L SFL+WVE+NPGLGA+AFA+VYVFTTV FIPGSLLTLGAGLVFGRALGTGLG+LVGSLAVLAGAT+G ILAFLLGRFVLQ+QAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNY+MGVT V FRDY +GCVG IPGTVAFVFIGTTASGLLGD XXXXXXXXX GGIATVIAVVLISIY+KRALNKVLEEDR+ EA LE E+G+G + M+QS QDG RPAVVEHA+R+PV Sbjct: 57 YVILDYTVPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRVEQEA--LEMGLESGNGGMNN---MEQSAQDGARPAVVEHAVRMPV 329
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA) HSP 1 Score: 259 bits (663), Expect = 3.870e-79 Identity = 150/263 (57.03%), Postives = 189/263 (71.86%), Query Frame = 1 Query: 325 KQQKLIKAGVLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXX------------GGIATVIAVVLISIYSKRALNKVLEEDRL 1077 K++K+ K + L+ +I+YVI+DY+VP LG V VL FL WVE+NP G AFA VY+F TVAFIPGSLLTLGAGLVFGRALG G GV +GS AV+ GA+IG I+AF+LGR+VLQ AQ LFNKFK+++AV++AI+SQGLKL +LLRLSPVVPF+AFNYIMG+TA+ +DY +GC+G+IPGTVA+VFIG++ASG+ GD G IATVIAV LIS Y+K+ALN++L E L Sbjct: 20 KKEKIRKLCLGLVLVGLIIYVIVDYSVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGI-GDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNEVEL 281
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK) HSP 1 Score: 248 bits (633), Expect = 9.340e-75 Identity = 167/287 (58.19%), Postives = 200/287 (69.69%), Query Frame = 1 Query: 244 LTSSLHDYGATANTDGSDDGSVDAPPT--KQQKLIKAGVLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXX------------GGIATVIAVVLISIYSKRALNKVL 1062 LT + DY T GS GS+ T ++ KLIK G+L L+ II+YV+LDYT+P LG V +L SFL WVEE+PG G +AFA VYV TTV FIPGS+LTLGAGLVFGRAL +AFLLGR+VLQ AQ LFNKF VLKAV++AI+++GL+LVILLRLSPV+PFSAFNY+MG+T V FR YVLGCVGM+PGTVA+VFIGT+A+GLLGD XXXXXXXXXXXXX G ATV+AVVLI++ S+RAL +VL Sbjct: 18 LTPGMEDY-KKETTKGS--GSLGGEKTGDRKNKLIKFGLLSLLVGIIIYVVLDYTLPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVL 301
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA) HSP 1 Score: 199 bits (507), Expect = 1.750e-56 Identity = 118/281 (41.99%), Postives = 174/281 (61.92%), Query Frame = 1 Query: 325 KQQKLIKAGVLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLISIYSKRALNKVLEEDRLAHEAEELEAAGEAGDGLGGHSVAMDQSQQD 1167 ++ ++ K + L+ IV+VI+D T G ++ D +Q+FL+W+EENP G F VYV TV F+PG +LTLGAG VF A GTGLG+ VG+++V GA++G +LAFL+ R++L++ A GL KF + +A+++A++ +GLK++ILLRLSPV+PF+A NY+ GVTAV F+DY L M+PGT+ +VF+G +A L G + ++AV L S Y+K+ LNK+L+++ EA E A GE G GG S D D Sbjct: 12 RRSRIKKLVLALVLIGFIVFVIIDSTTNG--YIKDGIQTFLRWIEENPIEGFFMFMGVYVLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISVFVGASLGSMLAFLISRYILREWAVGLTEKFPIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLGASAQSLA------TIGSSTDSKALTISTVVVGVVLGIVAVALSSRYAKKELNKILDQEE---EANERIAGGE---GEGGKSQDRDNFVHD 278
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE) HSP 1 Score: 199 bits (506), Expect = 1.940e-55 Identity = 110/257 (42.80%), Postives = 162/257 (63.04%), Query Frame = 1 Query: 433 LQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXX-GGIATVIAVVLISIYSKRALNKVLEEDRLAHEAEELEAAG--------EAGDGLGGHSVAMDQSQQDGKR 1176 L++ +W+E+NP G + FA+++ +T+ F+PG LLT+GAG+ FGRALG G GVL GS+AVL GA + C++AF LGR+VL +QAQ ++++L AVN AI+ G+K++ILLRLSP+VPFS FN+I G+T V RDY+LG VG++PGT+AFV+IG + +G + + G +A V+A+V ++IY++RAL + L E L A++ E A E G G A+D G+R Sbjct: 93 LETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVESELDANADKEEKAEHEGSATDVECGSSPGEFKEAVDSGGSGGER 349
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: D7G9F3_ECTSI (Hypothetical UPF0043 protein slr0305 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F3_ECTSI) HSP 1 Score: 182 bits (461), Expect = 8.680e-50 Identity = 95/207 (45.89%), Postives = 145/207 (70.05%), Query Frame = 1 Query: 304 SVDAPPTKQQKLIKAGVLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGD 924 +V+ + + IK ++F ++ ++V I+D V L++ W+E+NP G + FA+++ +T+ F+PG LLT+GAG+ FGRALG G GVL GS+AVL GA + C++AF LGR+VL +QAQ ++++L AVN AI+ G+K++ILLRLSP+VPFS FN+I G+T V RDY+LG VG++PGT+AFV+IG + +G + + Sbjct: 52 AVEKDNERVNQRIKRIMMFVVVALVVSAIVDIACHD--NVRTWLETSFDWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNE 256
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV) HSP 1 Score: 181 bits (460), Expect = 4.330e-49 Identity = 104/256 (40.62%), Postives = 157/256 (61.33%), Query Frame = 1 Query: 307 VDAPPTKQQKLIKAGVLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLISIYSKRALNKVLEEDR 1074 V A K+ L K V L+ +IV++I+D G FV ++ L+W+EENP G F VY TV F+PGSLLTLG+G VF + G G GVL+ +LAV GAT+G ++AF+LGR++L+ + L K+ V +A+++A++ +GL+++ILLRLSP++PF+A NYI GVT+V F+ Y ++PGT+ FVF+G +A L+ G + VIA+ L S Y+K+ LNK+LE+++ Sbjct: 34 VKACTDKRALLNKIIVGLVLVGLIVFIIVDSVTHG--FVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLVDSGNGGDTPVVTIATIVV------GVVFGVIAIALTSRYAKKELNKILEQEK 281
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: W7TSR1_9STRA (SNARE associated Golgi protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSR1_9STRA) HSP 1 Score: 181 bits (458), Expect = 9.890e-49 Identity = 106/260 (40.77%), Postives = 161/260 (61.92%), Query Frame = 1 Query: 340 IKAGVLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKS-QGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLISIYSKRALNKVLEEDRLAH-EAEELEAAGE 1113 ++ G+L L++++ + +DY+ G VA VL +FL+WV +P GA+AFA VY + V F+PG+ LTLG G +FG+ALG G G + SLAV GA+ G + AF LGR++L + AQ N++ +L+A++ ++ +GLK+V+LLRLSP+VPF+A NY+M VT+V + Y LG VGM+P VA+ F+GTTA GL + G +A V AV ++S +++ L K+ +E A E ++E GE Sbjct: 50 LQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAGGESSVERGVKIAMYVV----GAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGE 305
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A0G4EY60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EY60_VITBC) HSP 1 Score: 181 bits (458), Expect = 1.130e-48 Identity = 118/284 (41.55%), Postives = 166/284 (58.45%), Query Frame = 1 Query: 352 VLFTLLLIIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLISIYSKRALNKVLEEDRL-AHEAEELEAAGEAGDGLGGHSV----AMDQSQQDGKRPAVV 1188 V ++ IIVY+I+D T VA+ L F +WV++NP G +A+ VY+ TVAFIPGS+LTLGAG F A G G G+ G AVL GA +G LAF GRF+ + QGL +KFKV++A+++ ++QGLKL ILLRLSPVVPFSAFNYIMG T ++RDY +G +G+IPGT +V+IG + G +AT IAV +++ ++++AL ++ E++ A +A+ E G L G +V + Q QQ A V Sbjct: 58 VFLVIIAIIVYIIIDSTTGQR--VAEGLDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFETQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIGAIPA----FAGACSGKAEGSGHWSQWVFLAVGLVATFIAVFIVTWFARKALREITEKEAAEASKADGKEGVETPGPDLDGATVVTVTSSTQQQQQANGQAYV 335
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Match: A0A6U4ITL6_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4ITL6_9STRA) HSP 1 Score: 179 bits (455), Expect = 8.840e-48 Identity = 131/291 (45.02%), Postives = 186/291 (63.92%), Query Frame = 1 Query: 310 DAPPTKQQKLIKAGVLFTLLL-IIVYVILDYTVPGLGFVADVLQSFLKWVEENPGLGAIAFAVVYVFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSLAVLAGATIGCILAFLLGRFVLQKQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDXXXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLISIYSKRALNKVLEEDRLAHEAEELEAAGEAGDGLGGHSVAMDQSQQDGKRP 1179 +A T+++ +K ++ +LL I++Y+I+D T +VA +Q FLKW E+NP G AF VY TV F+PGS+LTLGAG VF A G G GVL+ ++AV GA G + AFLLGR++L+ G +K+K+ KA+++A+++ G +++ LLRLSPV+PF+A NYI GVTA+ F Y + ++PGT+ F F+G TA G L D XXXXXXXXXXXXXXXX V+A+V++S Y+K+ LNK+LEE E+ E GDG G + +DG+ P Sbjct: 67 EANATRKKARVKKIIIGLILLGIVIYIIVDSTTNR--YVAQGIQIFLKWFEDNPVAGLFAFMGVYFLATVMFVPGSILTLGAGFVFANAFGLGWGVLLATVAVFCGAVAGDLTAFLLGRYLLRGWVLGWTDKYKIFKAIDKALETNGFRIMSLLRLSPVIPFNAINYIAGVTAISFSAYAWANLFILPGTILFCFLGATA-GSLADSGASXXXXXXXXXXXXXXXXFG-----VLAIVVVSFYAKKELNKILEEQN----EEDSSTEPEGGDG-GDIEAGPAEEVKDGESP 344 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.903.1 >prot_C-linearis_contig104.903.1 ID=prot_C-linearis_contig104.903.1|Name=mRNA_C-linearis_contig104.903.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=327bp MDDLTSSLHDYGATANTDGSDDGSVDAPPTKQQKLIKAGVLFTLLLIIVYback to top mRNA from alignment at C-linearis_contig104:408883..413303- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.903.1 ID=mRNA_C-linearis_contig104.903.1|Name=mRNA_C-linearis_contig104.903.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4421bp|location=Sequence derived from alignment at C-linearis_contig104:408883..413303- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:408883..413303- >mRNA_C-linearis_contig104.903.1 ID=mRNA_C-linearis_contig104.903.1|Name=mRNA_C-linearis_contig104.903.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1962bp|location=Sequence derived from alignment at C-linearis_contig104:408883..413303- (Chordaria linearis ClinC8C monoicous)back to top |