mRNA_C-linearis_contig104.902.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI) HSP 1 Score: 352 bits (903), Expect = 1.400e-114 Identity = 200/273 (73.26%), Postives = 224/273 (82.05%), Query Frame = 3 Query: 315 YVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEED-AEAESNAAQIVAGSMMTEDIEAAA--GTRPSVIEHPVRTNV 1124 YV+LDYTVPGLGFV + L SFL+WVE+NPGLGA+AFA VY+FTTV FIPGSLLTLGAGLVFGRALGTGLG+LVGS V A +G I AFLLGRFVLQ+QAQGLFNKFKVLKAV+RAI++QGLKLVILLRLSPVVPFSAFNY+MGVT V FRDY +GCVG IPGTVAFVFIGTTASGLLGD +E TVQLIV IVGGIATVIAVVLISIYAKRALNKVLEED E E+ + +G+ ++E +A G RP+V+EH VR V Sbjct: 57 YVILDYTVPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRVEQEALEMGLESGNGGMNNMEQSAQDGARPAVVEHAVRMPV 329
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA) HSP 1 Score: 284 bits (727), Expect = 2.000e-88 Identity = 166/268 (61.94%), Postives = 202/268 (75.37%), Query Frame = 3 Query: 240 TATPPTKQQKLIKAGLLLGLVLV--IAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDG-----------DDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEE 1004 T K++K+ K L LGLVLV I YV++DY+VP LG V+ VL FL WVE+NP G AFA VY+F TVAFIPGSLLTLGAGLVFGRALG G GV +GS V A IG I AF+LGR+VLQD AQ LFNKFK+++AVD+AIE+QGLKL +LLRLSPVVPF+AFNYIMG+TA+ +DY +GC+G+IPGTVA+VFIG++ASG+ GD + +E D D+ TV LIV+IVG IATVIAV LIS YAK+ALN++L E Sbjct: 14 TGASKGKKEKIRK--LCLGLVLVGLIIYVIVDYSVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGI-GDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNE 278
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK) HSP 1 Score: 274 bits (700), Expect = 1.770e-84 Identity = 161/263 (61.22%), Postives = 196/263 (74.52%), Query Frame = 3 Query: 258 KQQKLIKAGLLLGLVLVIAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDST-----------VQLIVLIVGGIATVIAVVLISIYAKRALNKVLEEDAE 1013 ++ KLIK GLL LV +I YVVLDYT+P LG V+ +L SFL WVEE+PG G VAFA+VY+ TTV FIPGS+LTLGAGLVFGRAL XX XXX AFLLGR+VLQD AQ LFNKF VLKAVD+AIE +GL+LVILLRLSPV+PFSAFNY+MG+T V FR YVLGCVGM+PGTVA+VFIGT+A+GLLGD++D + E V ++VL+VG ATV+AVVLI++ ++RAL +VL ++AE Sbjct: 44 RKNKLIKFGLLSLLVGIIIYVVLDYTLPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVLMKEAE 306
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE) HSP 1 Score: 209 bits (533), Expect = 3.580e-59 Identity = 113/245 (46.12%), Postives = 163/245 (66.53%), Query Frame = 3 Query: 357 DNV---LQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVL-----------EEDAEAESNAAQIVAGS 1049 DNV L++ +W+E+NP G V FA ++ +T+ F+PG LLT+GAG+ FGRALG G GVL GS V A++ C+ AF LGR+VL +QAQ ++++L AV+ AIE G+K++ILLRLSP+VPFS FN+I G+T V RDY+LG VG++PGT+AFV+IG + +G + + E D + +++ LIVG +A V+A+V ++IYA+RAL + L EE AE E +A + GS Sbjct: 87 DNVRTWLETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVESELDANADKEEKAEHEGSATDVECGS 331
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA) HSP 1 Score: 203 bits (516), Expect = 1.340e-57 Identity = 112/253 (44.27%), Postives = 169/253 (66.80%), Query Frame = 3 Query: 264 QKLIKAGLLLGLVLVIAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGL--LGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEEDAEA 1016 +KL+ A +L+G I +V++D T G ++ + +Q+FL+W+EENP G F VY+ TV F+PG +LTLGAG VF A GTGLG+ VG+ V A +G + AFL+ R++L++ A GL KF + +A+D+A+E +GLK++ILLRLSPV+PF+A NY+ GVTAV F+DY L M+PGT+ +VF+G +A L +G S D + + + ++VG + ++AV L S YAK+ LNK+L+++ EA Sbjct: 17 KKLVLALVLIGF---IVFVIIDSTTNG--YIKDGIQTFLRWIEENPIEGFFMFMGVYVLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISVFVGASLGSMLAFLISRYILREWAVGLTEKFPIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLGASAQSLATIGSSTDSK---------ALTISTVVVGVVLGIVAVALSSRYAKKELNKILDQEEEA 255
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV) HSP 1 Score: 193 bits (490), Expect = 2.960e-53 Identity = 105/243 (43.21%), Postives = 159/243 (65.43%), Query Frame = 3 Query: 285 LLLGLVLV--IAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEED 1007 +++GLVLV I ++++D G FV ++ L+W+EENP G F AVY TV F+PGSLLTLG+G VF + G G GVL+ + V A +G + AF+LGR++L+D + L K+ V +A+D+A+E +GL+++ILLRLSP++PF+A NYI GVT+V F+ Y ++PGT+ FVF+G +A L+ ++ GD V + ++VG + VIA+ L S YAK+ LNK+LE++ Sbjct: 47 IIVGLVLVGLIVFIIVDSVTHG--FVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLV-------DSGNGGDTPVVTIATIVVGVVFGVIAIALTSRYAKKELNKILEQE 280
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S2JYW7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JYW7_9STRA) HSP 1 Score: 187 bits (476), Expect = 8.990e-52 Identity = 115/264 (43.56%), Postives = 168/264 (63.64%), Query Frame = 3 Query: 228 EEDVTA---TPPTKQQKLIKAGLLLGLVLV--IAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEE 1004 +E+VT TP + + L+K LL+G +L+ IAYV++D + G G V + ++ FL WVE+NP G AF VY TV FIPG++LTLGAG VF A G G+GVL+ S V A G + +FLLGR++L+D L +K+++ A+D A+ G K++ LLRLSP++PF+A NYI GVT+V FRD L + ++PGTV +VF+G++A G L DSE GDD T +I ++ G + ++ + S YAK+ LN V+ + Sbjct: 1 QEEVTTKEQTPKSSKADLVKK-LLIGSILLAFIAYVIVD-SASGDGRVTSTVEDFLDWVEDNPAEGVFAFIGVYFVATVLFIPGTILTLGAGFVFSSAFGLGVGVLLASIAVFVGASSGALASFLLGRYLLRDWVMTLTSKYQLFGAIDTALTNNGFKIMSLLRLSPIIPFNALNYIAGVTSVSFRDNALALLFILPGTVMYVFLGSSA-GSLSDSESS------GDDQTTTIITVVFGIVFGLLGIAATSYYAKKELNAVIAQ 255
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S2MII1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MII1_9STRA) HSP 1 Score: 188 bits (477), Expect = 1.310e-51 Identity = 106/260 (40.77%), Postives = 167/260 (64.23%), Query Frame = 3 Query: 258 KQQKLIKAGLLLGLVLVIAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEEDAEAESNAAQI 1037 ++ +LIK L L LV I YV++D+ + ++SFL W+E+NP G AF VY T+ F PG +LTLGAG VF ALG GLGV++ + V A G + AFL+GR++L+D GL K+ + +AVD A++ +GL+++ILLRLSP++PF+A NYI+GVT+V FRD+ + +G++PGT+ +VF+G++A L S GD+S V+++ +++G + ++ V + S YA++ L V+ E+ AAQ+ Sbjct: 26 RKARLIKIALGLLLVGFIIYVIVDFATSK--HLRTAMESFLNWIEDNPTEGVFAFMGVYFVATILFAPGLILTLGAGFVFANALGLGLGVVLATTAVFVGASTGSMAAFLIGRYLLRDWVVGLTKKYAIFEAVDVALKEKGLRIMILLRLSPLIPFNALNYIVGVTSVSFRDFTIAMIGILPGTLLYVFLGSSAGSLTDSSSG-------GDNSAVRILTIVLGSVFGILGVCVTSYYARKELQNVISRR---EAEAAQL 273
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A7S4W131_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W131_9STRA) HSP 1 Score: 186 bits (473), Expect = 8.200e-51 Identity = 105/259 (40.54%), Postives = 163/259 (62.93%), Query Frame = 3 Query: 240 TATPPTKQQK-LIKAGLLLGLVLVIAYVVLDYTVPGLGFVDNVLQ---SFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEE 1004 T TPPT ++ L K G L LV I YV++D L N ++ FL W+E+NP G AF VYI ++ FIPG +LTLGAG VF ALG G+G+ + + V A G +FL+GR++L+D L K + +A+D A++ +GL+++ILLR+SP+VPF+ FNY+ GVT++ RDY +G +G++PGT+ ++ +G++A L+ S G+DSTV++I +++G + V+ V + YAK+ LNK+L + Sbjct: 16 TQTPPTSRRAFLFKIGFGLILVGFIIYVIID-----LATTKNTMRIVADFLDWIEDNPAAGVFAFIGVYIIASIFFIPGLILTLGAGFVFANALGLGVGIFLATVAVFFGAFFGACASFLIGRYLLRDCVGKLTKKRVIFEAIDAALKDKGLRIMILLRVSPLVPFNVFNYVAGVTSISLRDYAIGMIGILPGTLLYILLGSSAGSLVDSSSS-------GNDSTVRIISIVLGIVFAVLGVYATTYYAKKELNKILSQ 262
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Match: A0A0G4EY60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EY60_VITBC) HSP 1 Score: 186 bits (473), Expect = 1.160e-50 Identity = 113/251 (45.02%), Postives = 158/251 (62.95%), Query Frame = 3 Query: 276 KAGLLLGLVLVIAYVVLDYTVPGLGFVDNVLQSFLKWVEENPGLGAVAFAAVYIFTTVAFIPGSLLTLGAGLVFGRALGTGLGVLVGSXXVXXXAIIGCIFAFLLGRFVLQDQAQGLFNKFKVLKAVDRAIETQGLKLVILLRLSPVVPFSAFNYIMGVTAVKFRDYVLGCVGMIPGTVAFVFIGTTASGLLGDSEDEEEAMEDGDDSTVQLIVLIVGGIATVIAVVLISIYAKRALNKVLEEDAEAESNA 1028 K + L ++ +I Y+++D T G + L F +WV++NP G +A+ AVY+ TVAFIPGS+LTLGAG F A G G G+ G V A +G AF GRF+ + QGL +KFKV++A+D+ ETQGLKL ILLRLSPVVPFSAFNYIMG T ++RDY +G +G+IPGT +V+IG + G + E G Q + L VG +AT IAV +++ +A++AL ++ E++A S A Sbjct: 55 KLLVFLVIIAIIVYIIIDSTT-GQRVAEG-LDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFETQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIGAIPA-FAGACSGKAE----GSGHWSQWVFLAVGLVATFIAVFIVTWFARKALREITEKEAAEASKA 298 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.902.1 >prot_C-linearis_contig104.902.1 ID=prot_C-linearis_contig104.902.1|Name=mRNA_C-linearis_contig104.902.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=323bp MSTTDLSNVNAIDKPMTTEEEEDVTATPPTKQQKLIKAGLLLGLVLVIAYback to top mRNA from alignment at C-linearis_contig104:401833..404481- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.902.1 ID=mRNA_C-linearis_contig104.902.1|Name=mRNA_C-linearis_contig104.902.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2649bp|location=Sequence derived from alignment at C-linearis_contig104:401833..404481- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:401833..404481- >mRNA_C-linearis_contig104.902.1 ID=mRNA_C-linearis_contig104.902.1|Name=mRNA_C-linearis_contig104.902.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1938bp|location=Sequence derived from alignment at C-linearis_contig104:401833..404481- (Chordaria linearis ClinC8C monoicous)back to top |