Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal anchor |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-00_001560.1 |
| Exons | 2 |
| Model size | 882 |
| Cds size | 882 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927386.859661-CDS-C-linearis_contig104:369323..369452 | 1622927386.859661-CDS-C-linearis_contig104:369323..369452 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 369324..369452 + |
| 1690879669.886861-CDS-C-linearis_contig104:369323..369452 | 1690879669.886861-CDS-C-linearis_contig104:369323..369452 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 369324..369452 + |
| 1622927386.8726616-CDS-C-linearis_contig104:369686..370439 | 1622927386.8726616-CDS-C-linearis_contig104:369686..370439 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 369687..370439 + |
| 1690879669.8957753-CDS-C-linearis_contig104:369686..370439 | 1690879669.8957753-CDS-C-linearis_contig104:369686..370439 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig104 369687..370439 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.897.1 >prot_C-linearis_contig104.897.1 ID=prot_C-linearis_contig104.897.1|Name=mRNA_C-linearis_contig104.897.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=294bp
RRRIKKSRAGVGKDFSEFLLVIGAIMTCVIAPVFAFFIHSIYKDPAAPEL
ARSCLKAIKEKLLSYLGRQQPAMPDSSVDRINVASNVSSVLRATSRRRKI
NTVDTSNEAAFWAADRGAASQSTLLPPTTDRLQHPRRHGENDDRIEDFPR
NGDASFGRRNYPQKKELSERRPDPATMAPHSSGVLFPPRRAGRGAGIRAG
ASREAAGAPKWWREGGGSRAPSASQRAELLGEKEQEYDFGPGRAMEWDLY
PDIGDGDEDDVREAAGRGSEPRGVYKSARSKRRMSRSKRALRIR back to topmRNA from alignment at C-linearis_contig104:369324..370439+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig104.897.1 ID=mRNA_C-linearis_contig104.897.1|Name=mRNA_C-linearis_contig104.897.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1116bp|location=Sequence derived from alignment at C-linearis_contig104:369324..370439+ (Chordaria linearis ClinC8C monoicous)
CGGCGACGGATCAAGAAGTCACGAGCAGGGGTAGGAAAGGATTTCTCCGA
GTTTCTGCTGGTGATCGGAGCGATCATGACGTGCGTCATCGCACCGGTGT
TTGCCTTCTTCATTCACTCCATATACAAGGTACCCGCGCTCCCGTATCGT
CCGACCTACCCTGTCTGTGTGACGTTTGTAATGAACTACCGTGTAAGGTT
AGCCACTCGGCATATCTCTCTTAGTGTCTTGCTTGCTGTCCCTGCCGTAT
TTGAGGTTATGTGGGCCTATAGTACGGTCATGATAACATCCTACTACATG
TGCGCTTGTTTTGTCTTTTTTCACCCCCCTTTATCTGTACGTATTTCGTT
TTTGCCGCTGCAGGATCCAGCGGCCCCAGAGCTAGCGCGGTCATGCTTGA
AAGCCATCAAGGAAAAACTATTGTCATATCTAGGAAGGCAACAACCAGCA
ATGCCTGACTCCTCCGTGGATCGAATCAATGTAGCATCGAACGTTTCGTC
AGTTCTTCGAGCCACCAGCCGTCGCCGCAAGATCAACACGGTCGACACCA
GTAACGAAGCAGCTTTCTGGGCTGCTGATCGAGGCGCAGCAAGTCAGAGT
ACGTTGCTGCCGCCCACGACAGACCGATTGCAACACCCCCGACGGCACGG
CGAAAACGACGACCGGATCGAAGACTTTCCCCGTAACGGTGACGCCAGCT
TTGGCCGCCGCAACTACCCCCAGAAAAAAGAACTCTCCGAGCGGCGACCC
GACCCGGCTACGATGGCCCCTCATTCCTCTGGCGTGCTGTTCCCACCGCG
GCGAGCAGGGCGTGGGGCAGGAATCAGAGCTGGTGCGAGCCGTGAAGCTG
CCGGTGCGCCGAAGTGGTGGCGGGAGGGCGGCGGCAGTCGCGCTCCTTCA
GCATCACAGCGGGCAGAACTTCTCGGTGAAAAGGAACAAGAGTATGACTT
TGGGCCGGGCCGGGCAATGGAGTGGGATCTGTATCCGGATATAGGCGATG
GTGACGAAGATGATGTGCGGGAGGCAGCGGGGCGTGGATCTGAGCCTCGC
GGCGTCTACAAGAGTGCCCGGAGTAAACGGAGAATGTCGAGAAGTAAGCG
GGCGTTAAGGATTCGT back to topCoding sequence (CDS) from alignment at C-linearis_contig104:369324..370439+ >mRNA_C-linearis_contig104.897.1 ID=mRNA_C-linearis_contig104.897.1|Name=mRNA_C-linearis_contig104.897.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1764bp|location=Sequence derived from alignment at C-linearis_contig104:369324..370439+ (Chordaria linearis ClinC8C monoicous)
CGGCGACGGATCAAGAAGTCACGAGCAGGGGTAGGAAAGGATTTCTCCGA
GTTTCTGCTGGTGATCGGAGCGATCATGACGTGCGTCATCGCACCGGTGT
TTGCCTTCTTCATTCACTCCATATACAAGCGGCGACGGATCAAGAAGTCA
CGAGCAGGGGTAGGAAAGGATTTCTCCGAGTTTCTGCTGGTGATCGGAGC
GATCATGACGTGCGTCATCGCACCGGTGTTTGCCTTCTTCATTCACTCCA
TATACAAGGATCCAGCGGCCCCAGAGCTAGCGCGGTCATGCTTGAAAGCC
ATCAAGGAAAAACTATTGTCATATCTAGGAAGGCAACAACCAGCAATGCC
TGACTCCTCCGTGGATCGAATCAATGTAGCATCGAACGTTTCGTCAGTTC
TTCGAGCCACCAGCCGTCGCCGCAAGATCAACACGGTCGACACCAGTAAC
GAAGCAGCTTTCTGGGCTGCTGATCGAGGCGCAGCAAGTCAGAGTACGTT
GCTGCCGCCCACGACAGACCGATTGCAACACCCCCGACGGCACGGCGAAA
ACGACGACCGGATCGAAGACTTTCCCCGTAACGGTGACGCCAGCTTTGGC
CGCCGCAACTACCCCCAGAAAAAAGAACTCTCCGAGCGGCGACCCGACCC
GGCTACGATGGCCCCTCATTCCTCTGGCGTGCTGTTCCCACCGCGGCGAG
CAGGGCGTGGGGCAGGAATCAGAGCTGGTGCGAGCCGTGAAGCTGCCGGT
GCGCCGAAGTGGTGGCGGGAGGGCGGCGGCAGTCGCGCTCCTTCAGCATC
ACAGCGGGCAGAACTTCTCGGTGAAAAGGAACAAGAGTATGACTTTGGGC
CGGGCCGGGCAATGGAGTGGGATCTGTATCCGGATATAGGCGATGGTGAC
GAAGATGATGTGCGGGAGGCAGCGGGGCGTGGATCTGAGCCTCGCGGCGT
CTACAAGAGTGCCCGGAGTAAACGGAGAATGTCGAGAAGTAAGCGGGCGT
TAAGGATTCGTGATCCAGCGGCCCCAGAGCTAGCGCGGTCATGCTTGAAA
GCCATCAAGGAAAAACTATTGTCATATCTAGGAAGGCAACAACCAGCAAT
GCCTGACTCCTCCGTGGATCGAATCAATGTAGCATCGAACGTTTCGTCAG
TTCTTCGAGCCACCAGCCGTCGCCGCAAGATCAACACGGTCGACACCAGT
AACGAAGCAGCTTTCTGGGCTGCTGATCGAGGCGCAGCAAGTCAGAGTAC
GTTGCTGCCGCCCACGACAGACCGATTGCAACACCCCCGACGGCACGGCG
AAAACGACGACCGGATCGAAGACTTTCCCCGTAACGGTGACGCCAGCTTT
GGCCGCCGCAACTACCCCCAGAAAAAAGAACTCTCCGAGCGGCGACCCGA
CCCGGCTACGATGGCCCCTCATTCCTCTGGCGTGCTGTTCCCACCGCGGC
GAGCAGGGCGTGGGGCAGGAATCAGAGCTGGTGCGAGCCGTGAAGCTGCC
GGTGCGCCGAAGTGGTGGCGGGAGGGCGGCGGCAGTCGCGCTCCTTCAGC
ATCACAGCGGGCAGAACTTCTCGGTGAAAAGGAACAAGAGTATGACTTTG
GGCCGGGCCGGGCAATGGAGTGGGATCTGTATCCGGATATAGGCGATGGT
GACGAAGATGATGTGCGGGAGGCAGCGGGGCGTGGATCTGAGCCTCGCGG
CGTCTACAAGAGTGCCCGGAGTAAACGGAGAATGTCGAGAAGTAAGCGGG
CGTTAAGGATTCGT back to top
|