mRNA_C-linearis_contig104.871.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig104.871.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE) HSP 1 Score: 200 bits (509), Expect = 3.790e-60 Identity = 96/131 (73.28%), Postives = 108/131 (82.44%), Query Frame = 2 Query: 5 YRTSEAVDISVMGDQAGYNVGWTRPGEFLRYTVNVEKSAAAFDFKFHVAAPSAFDDAGSFRIVTGGTGCDNYATDLSGLVTVPSTGGWGNFASLPISGNGTGGLSNGPAIIWLCVESTGFNIDSFTMTAAA 397 YR E VDIS M Q YNVGWTRPGEFLRYTV VE++A+AFDF+F VAAP A+ ++GSF +VTGGTGCD++ TDLSGLVTVPSTGGWG+FASL +S GTGGLS G A IWLCV S GFNIDSFTMTA A Sbjct: 320 YRLEEGVDISAMESQNAYNVGWTRPGEFLRYTVTVEEAASAFDFRFQVAAPPAYHNSGSFHVVTGGTGCDDFTTDLSGLVTVPSTGGWGSFASLSVSNKGTGGLSYGHAKIWLCVVSKGFNIDSFTMTATA 450
BLAST of mRNA_C-linearis_contig104.871.1 vs. uniprot
Match: D7FTA2_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA2_ECTSI) HSP 1 Score: 149 bits (377), Expect = 3.150e-39 Identity = 74/131 (56.49%), Postives = 93/131 (70.99%), Query Frame = 2 Query: 5 YRTSEAVDISVMGDQAGYNVGWTRPGEFLRYTVNVEKSAAAFDFKFHVAAPSAFDDAGSFRIVTGGTGCDNYATDLSGLVTVPSTGGWGNFASLPISGNGTGGLSNGPAIIWLCVESTGFNIDSFTMTAAA 397 +RT+E VDI G+ VGWTR GEF RYTV+V +A AFDF+F VA+P+ F GS ++V+GGTGC +Y TDLSG++ + TG W FA++ SG G+GGL GP IIWLC S+GFNIDSFTMT A Sbjct: 979 FRTTEDVDIKAT-TAGGHYVGWTRAGEFTRYTVDVRTAADAFDFEFVVASPTGFS--GSLQVVSGGTGCSDYETDLSGVIDIMPTGDWTTFATITSSGGGSGGLGEGPNIIWLCTISSGFNIDSFTMTTVA 1106
BLAST of mRNA_C-linearis_contig104.871.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI) HSP 1 Score: 132 bits (331), Expect = 4.930e-33 Identity = 64/96 (66.67%), Postives = 75/96 (78.12%), Query Frame = 2 Query: 5 YRTSEAVDISVMGDQAGYNVGWTRPGEFLRYTVNVEKSAAAFDFKFHVAAPSAFDDAGSFRIVTGGTGCDNYATDLSGLVTVPSTGGWGNFASLPI 292 +R +E VDIS G Y+V W R EFLRYTVNVEK+A+AFDF F VA ++ D+GSFR+VTGGTGCD+Y TDLSGLV VPSTGGWG FASLP+ Sbjct: 890 FRPNEDVDIS--GGHDDYHVAWIRATEFLRYTVNVEKAASAFDFTFQVATIPSYHDSGSFRVVTGGTGCDDYTTDLSGLVVVPSTGGWGTFASLPV 983
BLAST of mRNA_C-linearis_contig104.871.1 vs. uniprot
Match: D7FGU3_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGU3_ECTSI) HSP 1 Score: 130 bits (328), Expect = 1.260e-32 Identity = 69/131 (52.67%), Postives = 89/131 (67.94%), Query Frame = 2 Query: 5 YRTSEAVDISVMGDQAGYNVGWTRPGEFLRYTVNVEKSAAAFDFKFHVAAP-SAFDDAGSFRIVTGGTGCDNY-ATDLSGLVTVPSTGGWGNFASLPISGNGTGGLSNGPAIIWLCVESTGFNIDSFTMTA 391 +R SE VDIS+ GD GYNVGW R GE+LRYT++V + + F F V++P + D+ G+FR+VTGG GCD+ ATDLSGLVT P TG WG++ + + NG L+ G IWLCV S GFN+D F M A Sbjct: 798 FRPSENVDISINGD--GYNVGWMRSGEYLRYTIDVTEDISDLGFSFSVSSPYTNIDERGTFRVVTGGGGCDDDDATDLSGLVTAPYTGAWGSYET--VEANGGQSLATGQTEIWLCVVSAGFNLDYFDMGA 924
BLAST of mRNA_C-linearis_contig104.871.1 vs. uniprot
Match: A0A6H5JFJ7_9PHAE (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFJ7_9PHAE) HSP 1 Score: 129 bits (323), Expect = 5.790e-32 Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = 2 Query: 5 YRTSEAVDISVMGDQAGYNVGWTRPGEFLRYTVNVEKSAAAFDFKFHVAAP-SAFDDAGSFRIVTGGTGCDNY-ATDLSGLVTVPSTGGWGNFASLPISGNGTGGLSNGPAIIWLCVESTGFNIDSFTMTA 391 +RTSE VDIS+ GD GYNVGW GE+LRYT++V + + F F V++P + D+ G+FR+VTGG GCD+ ATDLSGLVT P TG WG++ + + NG L+ G IWLCV S GFN+D F + A Sbjct: 618 FRTSENVDISINGD--GYNVGWMSSGEYLRYTIDVTEDISDLGFSFSVSSPYTNVDERGTFRVVTGGGGCDDDDATDLSGLVTAPYTGAWGSYET--VEANGGQSLATGQTEIWLCVVSAGFNLDYFDIGA 744
BLAST of mRNA_C-linearis_contig104.871.1 vs. uniprot
Match: A0A402D0H8_9BACT (Beta-N-acetylhexosaminidase n=2 Tax=Capsulimonas corticalis TaxID=2219043 RepID=A0A402D0H8_9BACT) HSP 1 Score: 75.9 bits (185), Expect = 1.950e-13 Identity = 45/129 (34.88%), Postives = 71/129 (55.04%), Query Frame = 2 Query: 2 GYRTSEAVDISVMGDQAGYNVGWTRPGEFLRYTVNVEKSAAAFDFKFHVAAPSAFDDAGSFRIVTGGTGCDNYATDLSGLVTVPSTGGWGNFASLPISGNGTGGLSNGPAIIWLCVESTGFNIDSFTMT 388 GYR EAVD+ GD ++VG+TRPG++L+YTV V +A A+D V++ A G F + D +L+G +T P+TGGW + + S + L G +++ ++ G+N+DS T T Sbjct: 329 GYREDEAVDVEPFGDGRRFDVGYTRPGQWLKYTVTVA-AAGAYDLNVRVSSGEA---GGVFHVE------DGSGANLTGPMTAPATGGWDTWTLVHASVH----LQAGRSVLKFVEDTGGYNLDSMTFT 443
BLAST of mRNA_C-linearis_contig104.871.1 vs. uniprot
Match: UPI00142FBF98 (alpha-L-fucosidase n=1 Tax=Maribellus sediminis TaxID=2696285 RepID=UPI00142FBF98) HSP 1 Score: 67.8 bits (164), Expect = 1.490e-10 Identity = 49/123 (39.84%), Postives = 68/123 (55.28%), Query Frame = 2 Query: 5 YRTSEAVDISVMGDQAGYNVGWTRPGEFLRYTVNVEKSAAAFDFKFHVAAPSAFDDAGSFRIVTGGTGCDNYATDLSGLVTVPSTGGWGNFASLPISGNGTGGLSNGPAIIWLCVESTGFNID 373 YR EAVDI V + GY VGWT GE+L YTV VEKSA+ + K +V+ S D R+ CD D +G ++VP+TGG+ N+ + N T L G ++ + +ES FN+D Sbjct: 685 YRPEEAVDIDVC--EGGYAVGWTSGGEWLVYTVYVEKSAS-YTVKLNVSTNS---DQAKMRLE-----CDGK--DKTGSISVPNTGGFQNYQEI----NKTIDLDAGEHLLKVVIESGPFNLD 790
BLAST of mRNA_C-linearis_contig104.871.1 vs. uniprot
Match: A0A7X8SGU1_9BACT (Endo-1,3(4)-beta-glucanase n=1 Tax=Flammeovirga agarivorans TaxID=2726742 RepID=A0A7X8SGU1_9BACT) HSP 1 Score: 66.6 bits (161), Expect = 4.000e-10 Identity = 44/126 (34.92%), Postives = 65/126 (51.59%), Query Frame = 2 Query: 5 YRTSEAVDISVMGDQAGYNVGWTRPGEFLRYTVNVEKSAAAFDFKFHVAAPSAFDDAGSFRIVTGGTGCDNYATDLSGLVTVPSTGGWGNFASLPISGNGTGGLSNGPAIIWLCVESTGFNIDSFT 382 YR E VD+ V G+ G +GWT PGE+LRYTV V S + F F A+ ++ + G F I GT ++SG ++V +TGGW + S + G L+ G ++ + GFN+ T Sbjct: 1628 YRKDEFVDV-VYGEDEGPTIGWTGPGEWLRYTVEVTTSGI-YSFSFRYASDNS-ESRGPFYIEVDGT-------NISGNISVDATGGWNTWQSKTVEGLS---LTKGEHVMKVYFIDGGFNLGKMT 1740
BLAST of mRNA_C-linearis_contig104.871.1 vs. uniprot
Match: UPI0012BC2935 (glycosyl hydrolase family 8 n=1 Tax=Fulvivirga kasyanovii TaxID=396812 RepID=UPI0012BC2935) HSP 1 Score: 66.2 bits (160), Expect = 5.210e-10 Identity = 48/128 (37.50%), Postives = 67/128 (52.34%), Query Frame = 2 Query: 5 YRTSEAVDISVMGDQAGYNVGWTRPGEFLRYTVNVEKSAAAFDFKFHVAAPSAFDDAGSFRIVTGGTGCDNYATDLSGLVTVPSTGGWGNFASLPISGNGTGGLSNGPAIIWLCVESTGFNIDSFTMT 388 YRT EAVDI GYNVGWT PGE+L Y+++V S + F AA S+ GS +I+ G D+SG V+ +TGGW + + +SG L G I+ + + S FN+D T + Sbjct: 551 YRTGEAVDIESC-TLGGYNVGWTLPGEWLEYSIDVAASGN-YTLDFSTAAESS---TGSLKILADGA-------DVSGTVSFNATGGWQVWQTHTLSGIT---LEEGRHILRIEMISGDFNLDKITFS 663
BLAST of mRNA_C-linearis_contig104.871.1 vs. uniprot
Match: A0A6B2TSC0_9ACTN (Carbohydrate-binding protein n=1 Tax=Streptomyces sp. SID13031 TaxID=2706046 RepID=A0A6B2TSC0_9ACTN) HSP 1 Score: 65.5 bits (158), Expect = 9.650e-10 Identity = 44/132 (33.33%), Postives = 69/132 (52.27%), Query Frame = 2 Query: 5 YRTSEAVDISVMGDQAG-YNVGWTRPGEFLRYTVNVEKSAAAFDFKFHVAAPSAFDDAGSFRIVTGGTGCDNYATDLSGLVTVPSTGGWGNFASLPISGNGTGGLSNGPAIIWLCVESTGFNIDSFTMTAAA 397 YR ++ VD+ D G YNVGWT G++ YTVNV +A + VA P+A +A +G T+LSG V++PSTGGW N++++ GL + + +S G+N++S T+ + Sbjct: 663 YR-ADGVDLESTSDTGGGYNVGWTSSGQWFHYTVNVA-TAGTYSVAMRVATPAAVTNAFHLASASG--------TNLSGNVSLPSTGGWQNWSTVTTQVTLPAGLQT----LTVYQDSGGWNLNSLQFTSGS 780 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig104.871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig104.871.1 >prot_C-linearis_contig104.871.1 ID=prot_C-linearis_contig104.871.1|Name=mRNA_C-linearis_contig104.871.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp MGDQAGYNVGWTRPGEFLRYTVNVEKSAAAFDFKFHVAAPSAFDDAGSFRback to top mRNA from alignment at C-linearis_contig104:110904..112170- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig104.871.1 ID=mRNA_C-linearis_contig104.871.1|Name=mRNA_C-linearis_contig104.871.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1267bp|location=Sequence derived from alignment at C-linearis_contig104:110904..112170- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig104:110904..112170- >mRNA_C-linearis_contig104.871.1 ID=mRNA_C-linearis_contig104.871.1|Name=mRNA_C-linearis_contig104.871.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at C-linearis_contig104:110904..112170- (Chordaria linearis ClinC8C monoicous)back to top |