mRNA_C-linearis_contig103.857.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE) HSP 1 Score: 250 bits (639), Expect = 3.620e-66 Identity = 178/430 (41.40%), Postives = 220/430 (51.16%), Query Frame = 3 Query: 669 ALKIGSNAANAISFVADLGEELQFLSPVLNTFQAIRNKAETARSNQEEL*APKERCLYITACIVGERRQN-------PSSDMCR---------------------------------------GDMEV----------------CRGLQQTGQESTDRKQDQP-----------LSNDPKPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPA--QNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVEA----TGDWNVRSPVDPR-PSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGAILRER 1718 A K+GS AA+ I FVADLGEEL L PVL T + IR K ET + N E+L +RC YITAC + + R P D GD+ + C + QE +KQ+ L PKP K+ANVP P KSWHVER +V ETV +AL +DG P LVGLVGDSG+GK TAAS IV S +R+ S IVWL N+GV LP LML+LA M++ DIGGS+GR P+ +GL Q +G G + V V E V + TG W + S D NG + VDELS+A+A+SVLR+AAEL+PE L +DA +LIELCGRVAMD AF VGRWS VR R+DR +WS A + R Sbjct: 16 ASKMGSAAADVIQFVADLGEELPLLQPVLRTLRIIREKVETVKRNPEDLTVLHQRCTYITACFIVKCRHGYTELDVAPLEDCVNAVEKFVERYRKRGKISRVLKAVGDKGDIVQLKERLRDLEGDLSLAGIASLAKYLIADPKPCSPVAFAFQERMGKKQEGNHEELLAKTETILRQLPKPPAKVANVPKGTPTHKSWHVERRNVTETVFQALDADGGPHLVGLVGDSGAGKTTAASAIVSSIVVRETFSDGIVWLPVNEGVHDNLPCLMLQLAQMVFEDIGGSVGRRPSGSDDGLAYVKQQVENGHGGKGLKCLVVAD---NVWESDVVSQLLETGMWILLSTRDEELVKRANGE-VVGVDELSEAEAESVLRRAAELSPEARLPDDAKDLIELCGRVAMDLAF-VGRWSTVRGRQDRTAWSDAACKVR 440
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: D7FZW8_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW8_ECTSI) HSP 1 Score: 236 bits (601), Expect = 2.670e-61 Identity = 168/408 (41.18%), Postives = 216/408 (52.94%), Query Frame = 3 Query: 651 AEAG*PALKIGSNAANAISFVADLGEELQFLSPVLNTFQAIRNKAETARSNQEEL*APKERCLYITACIVGERRQ----------------------------------------------NPSSDMCRGDM-----EVCRGLQQTGQESTDRKQDQPLSNDPKPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPA--QNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVEA----TGDWNVRSPVDPRPSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGA 1703 AEA AL+IGS ++A+S DLGEEL + PV T +AIR ET ++N+EEL A ++RC YITAC V + R N S D D+ V G +++ DR DQ L + P+ KLA VP P RKSWHVER H M TVL+AL R +V L G SGSGK T A++IVRS +R+ S IVWL N+G K+RLPSLML+LA M++ +IGGS+GR P+ ++ Q +G + + V V E V + TG W + S D + + VDELS+ADA+SVL++AAEL E L +DAV+LI+LCGRVAMD AF VGRWS VR R D SWS A Sbjct: 10 AEAARLALEIGSTISDAVSCAVDLGEELPVIKPVFKTLKAIRTTVETVKNNREELAALEQRCTYITACFVVKCRLIESEVDVAPLKDCVEAAKNFAERCSRRGKVSRVIKAFSDKSEIAGLNSSVDRLTTDLGLAGIAVLEGKVDDMKKTLDRI-DQRLESLPRSFGKLAAVPMGAPVRKSWHVERRHAMATVLDALNGSDRACVVALAGYSGSGKTTVAAEIVRSTEVREAFSDGIVWLPVNEGAKKRLPSLMLQLARMVHEEIGGSVGRVPSASEDSATYIKQRLEEGHKGRRLKCLVVAD---NVWEEDVVSKLVETGMWVLLSTRDEAVVKRSRGKAVVVDELSQADAESVLKRAAELPRESRLPDDAVDLIKLCGRVAMDVAF-VGRWSTVRGRHDPASWSDA 412
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5J759_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J759_9PHAE) HSP 1 Score: 223 bits (568), Expect = 2.960e-59 Identity = 150/340 (44.12%), Postives = 194/340 (57.06%), Query Frame = 3 Query: 771 IRNKAETARSNQEEL*APKERCLYITACIVGE-RRQNPSSDMCRGDMEVC-------------RGLQQTGQ-ESTDRKQ---DQPLSND--PKPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPAQNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVEA----TGDWNVRSPVDPRPSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGAILRER 1718 +R ET ++EL A ++RC Y+TACI+ + R +P S +E C R ++Q Q ++ RK+ +Q + D PKP +K A VP P RKSWHVER HV ETV+EALT + PRLVGLVGDSG+GK TAA+++VRS +R+ S IVWLT N G +RLPSLML+LA M+ DIGG +G HP ++G + G + V E V + TG + S G + +DELS DA+SVLR AAEL P V L +DAV+LI+LCGRVAMD AF VGRWS VR R DR +WS A + R Sbjct: 1 MRETVETVYQTRDELAALEKRCTYMTACIIAKFRHAHPGSAPNVSPLEDCVMEAEKFVERRKKRTMEQMVQNQAAARKELLANQEIIIDRLPKPPIKKAYVPQGTPTRKSWHVER-HVTETVVEALTGEAGPRLVGLVGDSGAGKTTAAAELVRSNVVRESFSDGIVWLTVNYGANKRLPSLMLQLARMVQEDIGGRVGGHPNESGGNADAYIKQRMENGHGGKGLKCLAVADNVWEKEVVSMLLKTGMTVLLSTRHEELVTGARGVPVRLDELSARDAESVLRSAAELPPAVRLPDDAVDLIDLCGRVAMDLAF-VGRWSTVRGRHDRVAWSDAAAKVR 338
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5KLK9_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLK9_9PHAE) HSP 1 Score: 210 bits (535), Expect = 3.680e-53 Identity = 127/247 (51.42%), Postives = 159/247 (64.37%), Query Frame = 3 Query: 1002 LANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPA--QNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVEA----TGDWNVRSPVDPR--PSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGAILRER 1718 LA VP PARKSWHVER HVM V +AL +G PRLVGLVGDSGSGK TAA++IVRS +R+ S IVWL+ NDG +RL +LM+ LA +++ DIGGS+GR PA +G + Q G G + V V E +V + TG W + S D SA G+ + VDELS+ DA SVLR+A+EL+PE+ L ++AV L+ELCGRVAMD AF VGRWS VR R DR +WS A + R Sbjct: 178 LATVPAGTPARKSWHVERRHVMRAVCDALPGEGGPRLVGLVGDSGSGKTTAAAEIVRSTEVREAFSDGIVWLSVNDGATERLRALMMHLARVVFEDIGGSVGRRPAGLDDGAAYTRQRMQSGHGGKGLKCLVVAD---NVWEEAVISKLLETGMWVLLSTRDEALVRSAEGGV-VVGVDELSEEDAMSVLRRASELSPELRLPDEAVELVELCGRVAMDVAF-VGRWSTVRGRSDRTAWSDAAHKVR 419
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: D7FZY7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY7_ECTSI) HSP 1 Score: 207 bits (526), Expect = 1.310e-51 Identity = 127/245 (51.84%), Postives = 151/245 (61.63%), Query Frame = 3 Query: 987 KPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPA--QNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVE----ATGDWNVRSPVDPRPSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGA 1703 K KLA +P P RKSWHVER +VME V EALT+ G P LVGLVGDSGSGK TAAS+IVRS +RQ S +VWLT N G K RLPSLML+LA M+ ++GG R PA +G + G G + V V E V TG W + S D G+ + VDE+S+ +A+SVLRKA+EL PE L +DAV+LIELCGRVAMD AF VGRWS VR R DR +WS A Sbjct: 195 KTPAKLAKIPKATPIRKSWHVERLYVMERVFEALTAVGGPHLVGLVGDSGSGKTTAASEIVRSNEVRQAFSDGVVWLTVNHGAKDRLPSLMLQLAHMMCEEVGG---RRPATSDDGAAYIKEKMQRGHGGKGLKCLVVAD---NVWEKEVVWKLLETGMWVLLSTRDEELVVGSEGEVVGVDEMSEVEAESVLRKASELPPETRLPDDAVDLIELCGRVAMDLAF-VGRWSTVRGRSDRTAWSDA 432
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5KYW3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYW3_9PHAE) HSP 1 Score: 205 bits (522), Expect = 2.550e-51 Identity = 126/257 (49.03%), Postives = 158/257 (61.48%), Query Frame = 3 Query: 987 KPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPAQNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVEA----TGDWNVRSPVDPRPSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGAI--LRERLFVRGSG 1739 K KL VP PARKSW+V+R HVM+TV E L SDG PRLVGLVG SGSGK T AS+ VRS +++ S I WL+ NDG K+RL SLML+LA ++Y DIG S+GR P + C+ + + G + V E V + TG W + S + + VDELS+ADA SVLR+AAEL P+ + DAV+LIELCGRVAMD AF VGRWS VR R+DR +WS A+ +RE + GSG Sbjct: 28 KTQAKLTKVPKGTPARKSWYVKRRHVMDTVFEGLASDGGPRLVGLVGGSGSGKTTVASESVRSTEVQEAFSDGIAWLSVNDGAKERLSSLMLQLARVVYEDIGCSVGRRPTSSD-DCAAYIRQRMKKGTGGKKLKCLVVADNVWEKEVVSKLLETGMWVLLSTRNITLVTEAHGEVVGVDELSEADAMSVLRRAAELPPQGKIPGDAVDLIELCGRVAMDLAF-VGRWSTVRGRQDRMAWSDAVSKVREEMGKVGSG 282
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5KJ30_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ30_9PHAE) HSP 1 Score: 169 bits (429), Expect = 1.270e-39 Identity = 151/422 (35.78%), Postives = 192/422 (45.50%), Query Frame = 3 Query: 669 ALKIGSNAANAISFVADLGEELQFLSPVLNTFQAIRNKAETARSNQEEL*APKERCLYITACIVGERRQNPSSDMCRGDMEVCRGLQQTGQ----------------ESTDRKQ---------------------------------------------DQPLSNDP-------KPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPAQNGLRCSLQLAADGGRSWGQRAEVSCGYG*RVGEGSVEA----TGDWNVRSPVDPRPSAGNGL*GLSVDELSKADAQSVLRKAAELTPEVGLLEDAVNLIELCGRVAMD*AFFVGRWSAVRSRKDRKSWSGAILRER 1718 ALK+GS ++I+FVADL E+L F NQEEL RC+++T C++ + RQ+ S+M +E C L+ G+ S+D+ Q + L+N K K A +P P KSWHVER V+E V E LT+DG P LVGLVGDSGSGK TAAS+IVRS N+ RLPSLML+LA M+Y +IGG R PA + + + R G G V E V G W + S D G + V+ELS+ +A+SVLRKAAEL PE L +DAV+LIELCGRVAMD AF GR S VR R DR +WS A + R Sbjct: 16 ALKMGSATVDSITFVADLCEDLPF-------------------ENQEELQTLYRRCVFLTTCVIVKSRQSSFSEMDVSPVEEC--LEAAGELVERCGGRGKMTRVLNASSDKDQIARMKANIRDLEANLSLAGVAILEGKTSDLRATVERMAKIQAATQEVILANTEIITDRLSKTPAKPAKIPKSTPIWKSWHVERFDVVERVFEPLTADGGPPLVGLVGDSGSGKTTAASEIVRS----------------NED---RLPSLMLQLAHMVYEEIGG---RRPATSDDGTAY-IKERMHRGHGGEGLKCLGVVDNVWEKEVVCELLEAGMWVLLSTRDEELVTGWEGEVVEVNELSEVEAESVLRKAAELPPETRLPDDAVDLIELCGRVAMDLAFG-GRLSTVRGRSDRTAWSKAASKVR 392
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: D7G5K4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5K4_ECTSI) HSP 1 Score: 135 bits (341), Expect = 1.990e-31 Identity = 67/115 (58.26%), Postives = 84/115 (73.04%), Query Frame = 3 Query: 984 PKPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPAQNG 1328 PKP K A++P P RKSWHVER HVM+TV+EALT + P LVGLVGDSG+GK TAAS++V S +R+ S IVWL N G +RLPSLML+LA M++ DIGG +G P ++G Sbjct: 191 PKPPTKKADIPQGTPMRKSWHVERRHVMDTVVEALTGEAGPHLVGLVGDSGAGKTTAASELVGSNVVRESFSDGIVWLAVNYGANKRLPSLMLQLARMVHEDIGGCVGGRPNESG 305
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5K498_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K498_9PHAE) HSP 1 Score: 121 bits (303), Expect = 6.650e-28 Identity = 75/130 (57.69%), Postives = 82/130 (63.08%), Query Frame = 3 Query: 2187 GEAKRSRAALGEALQVRRS*GVLPSSH*ELHPAVRVVEGDTAGGESSSRPGVEGVLARAVGVPAEGGFGGFQTTDSLAYVWQ*LHTAVTVAGGAGESVTATG*SIQERSG-EDRHGGRAVSTVLPCC*SG 2573 G+ + AAL + GV PSSH EL PAV V EG+TAGGESSSRPGVEG L R V VPA GGFG FQ T+SL ++ AG GESVTAT SIQ RSG E GR VSTVLPCC SG Sbjct: 21 GQGQEGSAALQDGAAGAAEMGVPPSSHRELCPAVVVREGNTAGGESSSRPGVEGALVRDVEVPAAGGFGAFQDTNSLRSMFGSACVQQPAAGDTGESVTATDQSIQGRSGGECSTDGRVVSTVLPCCSSG 150
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Match: A0A6H5KRI5_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRI5_9PHAE) HSP 1 Score: 114 bits (284), Expect = 2.720e-25 Identity = 62/119 (52.10%), Postives = 77/119 (64.71%), Query Frame = 3 Query: 963 DQPLSNDPKPSVKLANVPDDLPARKSWHVERCHVMETVLEALTSDGRPRLVGLVGDSGSGKATAASDIVRSPNIRQVLSI*IVWLTANDGVKQRLPSLMLRLAPMLYGDIGGSLGRHPA 1319 DQ L + P+ K A VP RKSWHVER HVM TVL+AL R +V L G SGSGK T A++IVRS +R+ S I WL G K+RLPSLML+LA ++ +IGGS+GR P+ Sbjct: 9 DQRLESLPRSLGKQAAVPIGAHVRKSWHVERRHVMATVLDALNGSDRACVVALAGYSGSGKTTVAAEIVRSAEVREAFSDGIAWLPVYQGAKERLPSLMLQLARKVHEEIGGSVGRVPS 127 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.857.1 >prot_C-linearis_contig103.857.1 ID=prot_C-linearis_contig103.857.1|Name=mRNA_C-linearis_contig103.857.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=105bp MCRGDMEVCRGLQQTGQESTDRKQDQPLSNDPKPSVKLANVPDDLPARKSback to top mRNA from alignment at C-linearis_contig103:528551..531755+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.857.1 ID=mRNA_C-linearis_contig103.857.1|Name=mRNA_C-linearis_contig103.857.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3205bp|location=Sequence derived from alignment at C-linearis_contig103:528551..531755+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:528551..531755+ >mRNA_C-linearis_contig103.857.1 ID=mRNA_C-linearis_contig103.857.1|Name=mRNA_C-linearis_contig103.857.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at C-linearis_contig103:528551..531755+ (Chordaria linearis ClinC8C monoicous)back to top |