mRNA_C-linearis_contig103.856.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: D7FMG5_ECTSI (Transient receptor potential channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG5_ECTSI) HSP 1 Score: 907 bits (2343), Expect = 2.130e-309 Identity = 565/957 (59.04%), Postives = 672/957 (70.22%), Query Frame = 2 Query: 515 WPRGAAVLQDAE-AAAAAGDTEGDADTIKAVETVLGKHPLPVDEALAALRPSGGGDGSTTSFFRTMSAPGDGCHVARAWAEVFSAALPPAKMTEACTAGFVTCC-APDPRR-FLCGISVFFAYGAEIAPRELIGLATVLTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTS-TTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSL-------SERGGRKGRDFLYSDGFVADSKFGKLMQGLGWTVYNTRTYRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELSNTEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFSVIDRLFGVDTSAKIVHEFGVGIAWLMLGPPVLLAAWGLWVASVPTAVLRVWRRANFTGKSLTFAVICSSVVVALHTLVLPFVALLFWAMSGLGLLVTVFRELGASLCGNDATARGGDAAGESGDQHRCARR-GAADAKAASTDGEGTGAAVCPASVAQILKHADDTPATSGRRRSLGRGGGGGHGDQSGLSVAEIVAHLDDLET----SERREQQEQTATWEQVARMRNHLDAAGKDRSEAVLARLAIVDASLKASIVELVERSVA 3337 WPRG +L A AAAAA + EG ++ +AV VLG +PLP ++ + ALRP+ GGD +TT FFR ++ G+ H + AWAEVFS +L P M+EACT GF C +P L +SVFFAYGA + P++LI LA +L +EE+K FLGGL+ VDNPFIPG+SLSVALEE+ KN+ ERE L ALQ+++DDL+ +L+RLPQ+IA FPGGV CE V EPE+AG++R FRGPLRLALQERQFS TLC+APLM YM YRFVAGLPDLQDSN+LLG + + TS TS P A + XXXXXXXXXXXXXXXXXXXXXXXXXXX R GRKGRDFLYSDGFVA S +L+QGLGWT + +P+D WE IF+GT L G QF+ +G+LTKP AYYKVP +RM L YVHL+ LALYT V LE+D+GELSNTEI LTF+VMAEIVSNL+QM F E+ R+KWNWLE LSL LLAGGL +R+ +SDVH GR L ALSAPL+FSRVLFFGQ L+RQGLVIQMM ILFGEMLQF LVLGTIMMGFTVSF+ALF E +S+G+ WLDVFKAMLGEV VF ++YEDSVYR+VA+VLLVVYL VVAVMLLNLLIAVLSTEHAKV++QQD AFRE KVRIMKLY R+V+ D LP+PFNL Q+A+ L +D L G T KI+ EF VG+ WL LG P +L AWGLW AS P AVL WRRA +TG+SLT AV CSSVVV LH LPFV FW SGLGL + L A+LCG + GE G R RR AA + AST G+ +A VA +L+ + +P GG H +G SVAEI A L++ ++ + +Q QT T E++ R RNHLD AG+ R EAVLA L VDA LK I EL ERSVA Sbjct: 69 WPRGRHILGGAAPAAAAAAEGEG-LESFRAVAAVLGNYPLPRNDGMEALRPTDGGDITTTRFFRDIAHRGNR-HSSWAWAEVFSKSLLPRDMSEACTQGFKACPQGSNPAHDLLPAMSVFFAYGAVVDPKDLIALAEILKLEEMKDCFLGGLSFVDNPFIPGLSLSVALEESLKNAPERESRCLEALQKAMDDLLRAVLDRLPQTIASFPGGVGGCESVLEPEVAGVLRDRDFRGPLRLALQERQFSKTLCIAPLMFKYMCYRFVAGLPDLQDSNDLLGGREEKRTRTSFETSGPVRAPVASAASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSGTRRGRKGRDFLYSDGFVAGSATERLLQGLGWTGRRAAAALTPPPERPSD--WETIFSGTFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTAVALESDDGELSNTEIALTFHVMAEIVSNLLQMRAGFVEFWRDKWNWLESLSLLLLAGGLTIRIRNSDVHQGRALFALSAPLVFSRVLFFGQFLKRQGLVIQMMTILFGEMLQFALVLGTIMMGFTVSFYALFEEAKSYGDVWLDVFKAMLGEVSVFSEIYEDSVYRDVARVLLVVYLTVVAVMLLNLLIAVLSTEHAKVDEQQDIAFRESKVRIMKLYVRIVDSDVLPSPFNLPQIAVGLVARGVDGLLGTKTCPKIMREFSVGVFWLTLGSPAILIAWGLWAASAPMAVLTAWRRATYTGRSLTVAVACSSVVVVLHVFALPFVLSWFWVRSGLGLAALTLKTLAAALCGGNG--------GEDGSGRRVPRRPSAAGSGGAST--AGSPSACSDVIVADMLRRGNASP-------------GGRHA--AGSSVAEIWAQLENPTMPDGLAQGQGEQNQTVTLEEIIRARNHLDEAGRGRGEAVLALLKSVDADLKDQIAEL-ERSVA 995
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: A0A6H5JX68_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX68_9PHAE) HSP 1 Score: 522 bits (1345), Expect = 1.330e-166 Identity = 319/556 (57.37%), Postives = 383/556 (68.88%), Query Frame = 2 Query: 515 WPRGAAVL-QDAEAAAAAGDTEGDADTIKAVETVLGKHPLPVDEALAALRPSGGGDGSTTSFFRTMSAPGDGCHVARAWAEVFSAALPPAKMTEACTAGFVTCC--APDPRRFLCGISVFFAYGAEIAPRELIGLATVLTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSKFGKLMQGLGWTVYNTRTYRSVDSSK----PTD-----------RDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELSNTEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQ 2128 WPRG +L A A AAA EG + +AV VL HPLP+D+ ALR + GGD +TT FFR ++ G+ H + AWAEVFS +L P M+EACT GF C + L +S+FFAYGA + P+ L L+ +L +EE+K FLGGL+ VDNPFIPG+SLSVALEE+ KN+ ERER L ALQ+++D L+L +L+RLPQ+IA FPGGV CE V EPE+AG+VR FRGPLRLALQERQFS TLC+APLM +YM YRFVAGLPDLQDS +LLGR + + TS S+ + A XXXXXXXXXXXXXXXXXXX L R GRKGR FLYSDGFVA S +L+QGLGWT + + P D DWE +F+GT L G QF+ +G+LTKP AYYKVP +RM L YVHL+ LALYTTV LE+D+ ELSNTEI LTF+VMAEIVSNL+QM F E+ R+KWNWLE LSL LLAGGL +R+ + DVH GR L ALSAPL+FSRVLFFGQ L+RQGLVIQ Sbjct: 72 WPRGRHILGYAAPAPAAAAKGEG-LERFRAVAAVLDNHPLPMDDGKEALRQAEGGDITTTRFFRDIAHRGNR-HSSWAWAEVFSKSLLPRDMSEACTQGFKACLQGSTPAHDLLPAMSLFFAYGAVVDPKNLTALSEILKLEEMKDCFLGGLSFVDNPFIPGLSLSVALEESFKNAPERERRFLEALQKAMDALLLAVLDRLPQTIASFPGGVGGCESVLEPEVAGVVRDRDFRGPLRLALQERQFSKTLCIAPLMFEYMCYRFVAGLPDLQDSTDLLGRREERRTRTSLQSSGPVRAPVASAASVSSVCTDGXXXXXXXXXXXXXXXXXXXXXPPLGTRRGRKGRGFLYSDGFVAGSATERLLQGLGWTGRRAAEALTPPPERRGGLPIDVTLCRSDVLVPSDWETVFSGTFLPGAQFVLVGILTKPLAYYKVPVMRMLLGFYVHLITLALYTTVALESDDAELSNTEIALTFHVMAEIVSNLLQMRAGFVEFWRDKWNWLESLSLLLLAGGLTIRIDNRDVHQGRALFALSAPLVFSRVLFFGQFLKRQGLVIQ 625
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI) HSP 1 Score: 358 bits (919), Expect = 1.700e-99 Identity = 247/668 (36.98%), Postives = 353/668 (52.84%), Query Frame = 2 Query: 854 ISVFFAYGAEIAPRELIGLATVLTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSKFGK--LMQGLGWTVYNTRTYRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELSNTEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFSVIDRLFGVDTSAKIVHEFGVGIAWLMLGPPVLLAAWGLWVASVPTAVLRVWRRANFTGKSLTFAVICSSVVVALHTLVLPFVALLFWAMSGLGLLVTVF 2851 +S Y +LI L+ + E L+ FL +AC DNPF+PG++LS+A ++ + E ER L +LQE VD L+LEILERLPQ++ F GG+ C VFEPE++ G GPLRLALQERQ T C PL+ D++S RF GLP L+D+ N+LG + + A ++ L ++ G++G+ L + D+ L+QG W + T L G QF G++ P YY+VPA+RM L L V+L ML ++TVVL +++G L+ E FY++A I++ +M +F Y + WN L+ L L L+ GGL VR D D GR L ALSAPL+FSR+LFF Q+LR G +IQ++ + E+++FG+V+ +M+GF +SF ALF + +FG L +FKAMLGEV F + + Y +VA L V+YL+V+AVMLLNLLIAVLST H+KVE + D+ F+ K RI++ Y +V+ LP PFNL+QL L LP V DR S + G WL LGP LWV S A VW +F K+ +++ +L++ ++ + FW + G L + F Sbjct: 534 LSCLLQYPTMFDTADLIQLSRERSAEWLRTCFLETVACSDNPFVPGMTLSIAFAKSASVAPEGERRKLLSLQERVDTLLLEILERLPQTVQGFDGGMTGCSAVFEPELSRE-DARGLPGPLRLALQERQHVQTFCTQPLLTDFLSRRFTYGLPGLRDTQNILGDRRELTNL------------ARGGPGELMSGQKYLALDEEGRRKEDGRSLDRCLLLDLQDKIGQEGK--LLDSRKIIDTLLSPCILLQGANCAGL-----------------WNTAVSLTFLPGAQFTIAGLVGMPDQYYRVPAMRMLLDLAVYLGMLVFFSTVVLFHEDGPLTPGEAAFAFYILAGIITEGQEMRRDFGLYAADHWNILDLLGLGLVTGGLIVRCADGDNSWGRALYALSAPLIFSRLLFFAQMLRFHGPMIQVVFSMTAELVKFGVVIIVVMLGFAMSFHALFGDVDTFGGTCLTLFKAMLGEVDFFGS-FPGNQYDSVATALFVIYLVVIAVMLLNLLIAVLSTSHSKVEGKADQEFKVSKARIIEHYRMVVDMCLLPPPFNLVQLILSLPVMVRDRSGQGTASTRAQEAVGRMAFWLALGPVAAACGTVLWVLSSLFAPF-VWHT-HFYSKAQA-----RRGALSVGSLLVRYLIVFFWCVLGAPLYLMAF 1161
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: A0A6H5JXT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXT0_9PHAE) HSP 1 Score: 315 bits (806), Expect = 1.860e-92 Identity = 206/407 (50.61%), Postives = 247/407 (60.69%), Query Frame = 2 Query: 2129 MMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFSVIDRLFGVDTSAKIVHEFGVGIAWLMLGPPVLLAAWGLWVASVPTAVLRVWRRANFTGKSLTFAVICSSVVVALHTLVLPFVALLFWAMSGLGLLVTVFRELGASLCGNDATARGGDAAGESGDQHRCARRGAADAKAASTDGEGTGAAVCPASVAQILKHADDTPATSGRRRSLGRGGGGGHGDQSGLSVAEIVAHLDDLET----SERREQQEQTATWEQVARMRNHLDAAGKDRSEAVLARLAIVDASLKASIVELVERSVA 3337 MM ILFGEMLQF LVLGTIMMGFTVSFFALF+ED+S+GE WLDVFKAMLGEV VF + YEDSV+R VA+ LLV+YL VV +MLLNLLIA VRIMKLY R+V+ D LP+PFNL Q+A+ L +D L G T KI+ EF VG+ WL LG P +L AWGLW ASVP AVL WRRA FTG+SL+ AV SSVVV LH LPFV + FW SGLGL + L +LCG + GE G R +RR S G G G SV + AD RR + GG +G SVAEI A L++ T ++R+++Q+QT T E++ +HLD AG+ R E VLA L V+A LK I EL E+SVA Sbjct: 1 MMTILFGEMLQFALVLGTIMMGFTVSFFALFQEDKSYGETWLDVFKAMLGEVSVFAENYEDSVHRYVARFLLVLYLTVVTIMLLNLLIA---------------------VRIMKLYVRIVDSDVLPSPFNLPQIAVGLVAKGVDGLLGTRTCPKIMREFSVGVFWLTLGAPAILIAWGLWAASVPAAVLTAWRRATFTGRSLSVAVAYSSVVVILHLFALPFVLVWFWVRSGLGLAALTLKTLATALCGGNG--------GEDGSGTRVSRR-------PSAAGSGGGPTAGSPSVCSDVVVADML-----RRGNASTGGR----HAAGSSVAEIWAQLENPTTPDGLAQRQDEQDQTVTVEEIIHALDHLDEAGRGRGEVVLALLKSVNADLKDQIAEL-EQSVA 361
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE) HSP 1 Score: 335 bits (858), Expect = 1.960e-90 Identity = 234/741 (31.58%), Postives = 370/741 (49.93%), Query Frame = 2 Query: 785 MTEACTAGFVTCC----APDPRRFLCGISVFFAYGAEIAPRELIGLATVLTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSK---FGKLMQ-GLGWTVYNTRTYRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELSN-TEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDS-DVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFSVIDRLF----------------------------GVDTSAKIVHE----------FGVGIAWLMLGPPVLLAAWGLWVASVPTAVLRVWRRANFTGKSLTFAVICSSVVVALHTLVLPFVALLFWAMSGLGLLVTVFRELG 2863 MT A ++ TCC P L ++ GA+ + L+ L+ ++ LK + LG ++ +NPFIPG++LSVA AT+ + E E+ L ++Q +VD+L+LE+LE +PQ++ F G ++ C +FEPE I R HG++GPL + L +R+ T C PL+ D+M+ +F GLP L+D+ +L LS +G + LY G +A+ K FG +Q G ++ TY G +FI G L++P +YYKVPA+RM L L ++ M+ ++ V+ ++ G+ S+ EIV T Y+ I++ ++ ++ +EY+R++WN L+ SL LL GG R+ D R L ALSAPL F+R+LFF QIL QG +IQ+M + G + +FG+++ +M+GF SF++L++E ++GE W +F+A LGE +D + + + VA VLLVVYL+++ +M+LNLL+AVLST HAKV+ ++ + R+++ Y +VE D+LP PFNL Q LPF V+D F ++ + K + FG W MLGP +LA W LW+ S+ A + VW+ + KSL + +V+ + + PF L+ W G+ + R LG Sbjct: 872 MTVALSSSLSTCCNNLSLPVEDARLSVLAYLLQQGAKPTNKGLLRLSNLVKFPRLKESLLGAISSANNPFIPGMNLSVACTTATRRAMEGEKRRLASMQAAVDELLLEVLEHMPQTVKGFKGEMRDCSAIFEPETV-ISRFHGYQGPLHVVLSKREQMETYCTIPLVLDFMTRKFTKGLPSLRDTEGVL----------------------------------------------------------LSNKGFTQT---LYGGGLLAEGKVFFFGMALQRGYAGGALSSITY---------------------FPGARFIIAGFLSRPGSYYKVPALRMCLDLVTYISMMIIFGGFVILHEAGDTSDWLEIVFTMYIFGGILTEFREILEDPWEYMRDQWNLLDVTSLTLLLGGAIQRMYGQVDDESSRALYALSAPLAFARILFFAQILPSQGPMIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTAYGEVWKAIFRATLGETDYLDD-FSGTTFDGVATVLLVVYLVLLTIMMLNLLVAVLSTAHAKVDANAGLEYKVTRARLIQHYVNVVEIDRLPPPFNLFQWIFALPFMVLDLCFRTSRRPSTASTNSAXXXXXXXXXXXXXXSINGNEKTKRDRSYFKVARGFFGRLAFWAMLGPIAVLAGWVLWMISIVKAPVVVWQTSG--DKSLGGRIARMLLVIFVCAVGAPFWHLVMWVRGGVAGVRRTMRALG 1526
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI) HSP 1 Score: 290 bits (741), Expect = 2.360e-76 Identity = 190/557 (34.11%), Postives = 299/557 (53.68%), Query Frame = 2 Query: 782 KMTEACTAGFVTCC----APDPRRFLCGISVFFAYGAEIAPRELIGLATVLTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSK---FGKLMQGLGWTVYNTRTYRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELSN-TEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDS-DVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVE 2425 +MT+A ++ T C P L ++ +GA+ + L+ L ++ LK + LG ++ DNPFIPG++LSVA AT+ + E E+ L ++Q ++D+L+LE+LE +PQ++ F G ++ C +FEPE I R HG++GPL + L +RQ T C PL+ D+MS +F GLP L+D+ +L TS +E G LY DG +A+ + FG +Q Y T S+ T G +FI G+L++P +YYKVPA+RM L L +++M+ ++ V+ +D G+ + EIV T Y+ I++ ++ D+ +EY+R++WN L+ SL LL GG+ R+ D R L ALSAPL F+R+LFF QIL QG +IQ+M + G + +FG+++ +M+GF SF++L++E ++G W +F+A LGE F+D + + + VA LLVVYL+++ +M+LNLL+AVLST HAKV+ Sbjct: 623 QMTDALSSSLSTGCNNLSLPVEDARLSVLAYLLQHGAKPTNKGLLRLCNLVKFPRLKESLLGAISSADNPFIPGMNLSVACTMATRRAMEGEKRRLASMQAAIDELLLEVLEHMPQTVKGFKGEMRDCSAIFEPETV-ISRFHGYQGPLHVVLSKRQQMETYCTIPLVLDFMSRKFTKGLPSLRDTEGVLLNN-----------------------------------------------------TSFTEPG-----QTLYGDGLLAEGRVFFFGMALQ----RSYAGGTLSSI----------------TYFPGARFIIAGLLSRPGSYYKVPALRMCLDLVTYILMMIIFGGFVILHDAGDTFDWMEIVFTMYIFGGILTEFREILDDPWEYMRDQWNLLDVASLTLLLGGVIQRMYGQVDDQSSRALYALSAPLAFARILFFVQILPSQGPIIQVMFSMTGLLAKFGMIMLLVMLGFVTSFYSLYKETTTYGVVWKAIFRATLGETDYFDD-FSGTTFDGVATALLVVYLVLLTIMMLNLLVAVLSTAHAKVD 1099
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE) HSP 1 Score: 257 bits (656), Expect = 4.130e-66 Identity = 218/696 (31.32%), Postives = 316/696 (45.40%), Query Frame = 2 Query: 854 ISVFFAYGAEIAPRELIGLATV-LTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGR-----------DFLYSDGFVADSKFGKLMQGLG------------W---TVYNTRT----YRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELS----NTEIVLTF-------------YVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMA--------ILFGE---MLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFS-----VIDRLFGVDTSAKIVHE------------FGVGIAWLMLGPPVLLAAWGLWVASVPTAVLRVWRR 2713 +S A A +P L LA E K L + NPFIPG+ LS+ L EA + + E ER +T +QESV+ L+LE+LERLP+S+ F + C D+FEP+ + F PL + L +Q C PL+ D++ +F LP L+D +L + LS RGG KG D DG + D + W T++ +++ +RS + D R + T G Q I G+ +P Y++VPA+RM L L V++ M+ +T VL + E S +T+ + F +++ + +M NF Y ++WN L+ LSL L GL RVVD LG AL+APL+ SR LFF QI QG +IQ ++F +L+FG V+ I++GFT++F LFR+ SFGE +LD+FKAMLG+ F+ ++ Y VA LLVVYL +V VMLLNLL+A+LST HA+V + +R F+ R+M Y +V D LPTPFNLLQL +W P + R GV + + G + W++LGP ++ LW+ SV A+ WR+ Sbjct: 451 LSSLMACSARPSPSHLKKLAIAHARGEAFKDCCLDAVTSAANPFIPGLVLSIRLAEAAEKANEGERRAITDIQESVNALLLEVLERLPRSVRSFERDMDDCRDMFEPKFLDVFED--FEKPLEMMLSRQQQRELFCNVPLVMDFLKRKFTLSLPRLRDPKEVLADSNE--------------------------------------------------ILHLS-RGGVKGDVCLVLDWGVDVDVQKEDGHLNDEQIDXXXXXXXXQADDHASLRPPWKHPTLFGSKSLLASFRSPRALLQGAND--RFPSLTPFPGAQVIVAGLAARPNDYFRVPAMRMVLDLVVYIGMIVALSTFVLFHSQAEKSYVEGSTDEQVVFRTLDWPEATCAKIFIVGGVFQEGREMARNFGRYCEDQWNALDLLSLLFLTIGLVGRVVDWKSQLGPAFYALAAPLLVSRALFFVQIHPLQGPMIQASGETKRFPQRVVFRMTRILLKFGFVMAVIVLGFTMAFHVLFRDFDSFGESFLDLFKAMLGDTDFFK-VFSGDTYDVVATFLLVVYLFIVTVMLLNLLVAILSTSHAQVAENIEREFKVSIARMMDHYQLVVTNDMLPTPFNLLQLIVW-PIAWCLHGCCGRNSGVSGNTQQTRNRSKEAYACGSKAIGPVVFWVVLGPVAVIGGSLLWMGSVLPAMY-FWRK 1088
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE) HSP 1 Score: 254 bits (649), Expect = 6.830e-66 Identity = 201/644 (31.21%), Postives = 298/644 (46.27%), Query Frame = 2 Query: 929 EELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFPGGVKACEDVFEPEIAGIVRGHGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSKFGKLMQG-LGWTVYNTRTYRSVDSSKPTDRDWERIFNG--------TVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVLENDNGELSNT------EIVL-----------TFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQG--LVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFSVIDRLFGVDTSA-----------KIVHEFG---VG--IAWLMLGPPVLLAAWGLWVASVPTAVLRVWRRANFTG 2728 E+ + L +A NPFIPG+ LS+ L EA + + E E+ +T + V+DL+LEILE LP+S+ F + A D+FEP + F P+ + L RQ + C APL+ D++ +F GLP ++D +L K H + + +T + R+ F+ D K + G L + T + + R + G T QFI G+ + Y++VP +RM L L V+L +L +T VL E S EIV T + + +M N+ Y+ ++WN L+ L L G RVVD LG ALSAPL+ SR LFF QI QG ++ +M +L L+FG V+ +M+GFT++F LFR+ SFGE +L++FKAM GE F D+ Y VA +LLVVYL +V ++LLNLL+A+LST H+KV++ DR F+ R+M Y +V D LP PFNLLQL +W + G TS + +E G +G + W++LGP ++ LW+ S P +V +WR+ + G Sbjct: 295 EKFRDCCLDAVASASNPFIPGLVLSIRLAEAAEKTNEGEQRAITDVHARVNDLLLEILEGLPRSVRSFERDMDASGDMFEP---ASLPSKDFETPMEMILSRRQQTEIFCSAPLVMDFIKRKFTLGLPSMRDKKEILADSKEIF----------HLSGGDVRGNVCLVLGTFVP------------------ITVVDADVRREDGPFIDLKAEDMDKKAARADHGQLSAQAWAHPTLLGSNCLLASFRSPRALLQGANDRLPCLTPFPAAQFIVAGLAARSNDYFRVPVMRMVLDLVVYLGVLVALSTFVLFRSQAEQSRVDGSADEEIVFRKLNWSEATCATAVIAGGMYREWFEMARNYGRYLEDQWNALDLLGLLFFTIGFIARVVDWTQQLGPAFYALSAPLLVSRALFFVQIHPLQGPMVIFRMTTVL----LKFGFVMAVVMIGFTMAFHVLFRDFDSFGESFLELFKAMFGETTFFNAFSGDT-YDAVATMLLVVYLSIVTILLLNLLVAILSTSHSKVQKNIDREFKASIARMMDHYQLVVTNDILPAPFNLLQLVVWPIAWCVGGCCGRSTSGSQSTRQELNRGREAYERGNKAIGPVVFWVVLGPVAVVGGTLLWIVSTPLSVY-LWRKHHREG 901
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE) HSP 1 Score: 252 bits (643), Expect = 3.390e-64 Identity = 189/573 (32.98%), Postives = 277/573 (48.34%), Query Frame = 2 Query: 938 KGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFP--GGVKACEDVFEPEIAGIVRG-HGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSKFGKLMQGLGWTVYNTRTYRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVL-----ENDNG---------ELSNTEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWLPFSVIDRLFGVDTSAKIVHE 2605 K L + NPF+PGV+LS+ L EA K + E ER L + S+D+L+LE+ ERLPQ++ F G+ +C +V EPE+ G + GPL + + + T C PL+ D++S +F GLPDL D+ LL + L E G + SDG + + L++G+ + W+ T L G QFI ++ P YY+VPA+RM L V++ M+A+ ++ VL E+D+G LS L F + A +M Y +++WN L+ L + L GL +R D G ALSAPL+ +RVLFF QIL+ G ++Q++ + +LQFG V+ +M+GFT++ FR+ FG+ L +FKAMLGE G+F++ + Y VA +L+VVYL +V VMLLNLLIA+LSTEHA+V + AF+ K RI+ Y +V+ D LP PFNL+QL L L V+ + AK H Sbjct: 540 KRCCLRAVTSAANPFVPGVTLSIRLSEAAKQASEGERRALFDTKSSIDELLLEMFERLPQTVRGFEEQAGMDSCTNVLEPELMRATTGSNDLGGPLDMIISDPLQLETFCKVPLIMDFLSSKFTLGLPDLMDTAGLLKNEHH--------------------------------------------------LWYLEEDGLFRDEHGFGSDG-IPVALLAALLKGVRQGI------------------WDNTPILTFLPGTQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAVLSSFVLFHSTTESDSGLDGIVAHRLSLSEGACALIF-ITAGAYREGREMKRGIRAYFKDQWNVLDALGILFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQFHGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVFFRDVADFGDTLLGLFKAMLGETGIFDE-FSGGRYDPVATILVVVYLCIVTVMLLNLLIAILSTEHAQVMENTAEAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLILSLGVIVLTLPYYFLLEAKREHS 1041
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI) HSP 1 Score: 248 bits (634), Expect = 2.670e-63 Identity = 207/651 (31.80%), Postives = 302/651 (46.39%), Query Frame = 2 Query: 869 AYGAEIAPRELIGLAT-VLTVEELKGAFLGGLACVDNPFIPGVSLSVALEEATKNSRERERPILTALQESVDDLILEILERLPQSIADFP--GGVKACEDVFEPEIAGIVRG-HGFRGPLRLALQERQFSATLCVAPLMHDYMSYRFVAGLPDLQDSNNLLGRPKRTKAVTSTTSATTHTPEAETKAPXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSLSERGGRKGRDFLYSDGFVADSKFGKLMQGLGWTVYNTRTYRSVDSSKPTDRDWERIFNGTVLLGLQFITIGVLTKPAAYYKVPAIRMALSLYVHLVMLALYTTVVL-----ENDNG---------ELSNTEIVLTFYVMAEIVSNLVQMWDNFFEYVRNKWNWLECLSLFLLAGGLFVRVVDSDVHLGRGLLALSAPLMFSRVLFFGQILRRQGLVIQMMAILFGEMLQFGLVLGTIMMGFTVSFFALFREDQSFGECWLDVFKAMLGEVGVFEDLYEDSVYRNVAKVLLVVYLLVVAVMLLNLLIAVLSTEHAKVEQQQDRAFREDKVRIMKLYGRMVEGDQLPTPFNLLQLALWL-------PFSVI------------------DRLF--GVDTSAKIVHE-----FGVGIAWLMLGPPVLLAAWGLW 2671 A A + EL GL+ + + K L + NPFIPGV+LS+ L EA K + E ER L + S+D+++LE+ ERLPQ++ F G +C +V EPE+ G + GPL + + + T C PL+ D++S +F GLPDL D+ LL + + L E G + L DG + + L++G+ + W+ T L G QFI ++ P YY+VPA+RM L V++ M+A + VL +D G LS L F + A +M Y +++WN L+ L + L GL +R D G ALSAPL+ +RVLFF QIL+ QG ++Q++ + +LQFG V+ +M+GFT++ +FR+ + FG+ L +FKAMLGE G F++ + Y VA +L+VVYL +V VMLLNLLIA+LSTEHA+V++ AF+ K RI+ Y +V+ D LP PFNL+QL L L P+ + RLF V A+ H FG + WL+LGP + LW Sbjct: 499 ANSARPSASELKGLSRKAASGDVFKRCCLRAVTSAANPFIPGVTLSIRLTEAAKQASEGERRALFETKSSIDEMLLEMFERLPQTVRGFEEQAGTDSCTNVLEPELMRAQSGSNDLGGPLDMIISDPLQLETFCKVPLIMDFLSSKFTLGLPDLMDTAGLLKNEHQ--------------------------------------------------LWYLEEDGLFRDEHGLGLDG-IPVALLEALLKGVRQGI------------------WDNTPTLTFLPGAQFIVAAMVAAPTKYYEVPAMRMLLDFVVYVGMVAALSYFVLFHSTTGSDPGLDGIADHRFSLSEGACALIF-ITAGAYREGREMKRGIRAYFKDQWNVLDALGMLFLFVGLVIRWDDWTSTWGPAFYALSAPLVVARVLFFAQILQFQGPMVQVIFRMTATLLQFGAVMLVVMIGFTMALHVIFRDVEDFGDTLLGLFKAMLGETGFFDE-FSGGRYDPVATILVVVYLFIVTVMLLNLLIAILSTEHAQVQENTGGAFKVSKARIIAHYRTVVDNDVLPAPFNLVQLLLSLGVIAMTFPYCFLLEAKREQSETERPAIDEHGRLFWGNVWEGARQRHRGARRAFGQLVWWLVLGPVAVAGGAILW 1078 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.856.1 >prot_C-linearis_contig103.856.1 ID=prot_C-linearis_contig103.856.1|Name=mRNA_C-linearis_contig103.856.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1043bp MADTKTPSSFDGAEHDATPAADEKKDGESGVGSADERAPAAGHEWPTLEGback to top mRNA from alignment at C-linearis_contig103:511092..520110+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.856.1 ID=mRNA_C-linearis_contig103.856.1|Name=mRNA_C-linearis_contig103.856.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9019bp|location=Sequence derived from alignment at C-linearis_contig103:511092..520110+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:511092..520110+ >mRNA_C-linearis_contig103.856.1 ID=mRNA_C-linearis_contig103.856.1|Name=mRNA_C-linearis_contig103.856.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=6258bp|location=Sequence derived from alignment at C-linearis_contig103:511092..520110+ (Chordaria linearis ClinC8C monoicous)back to top |