Homology
BLAST of mRNA_C-linearis_contig103.851.1 vs. uniprot
Match:
D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI)
HSP 1 Score: 167 bits (423), Expect = 7.690e-44
Identity = 117/230 (50.87%), Postives = 141/230 (61.30%), Query Frame = 1
Query: 25 EDVALNDWRLDVSGVQVVVADASSVLGAASASSSVGKAEGPTPTPAS---DTAIIEGFDLNVQIQTATDRTTNGLVGVRLQASLPRLSCNIHSSAYLLLTRLLKNELSRPAAAAPSTGTQPPASNXXXXXXXXXXXXXXXXS--RGAVASRPFPISTSSPAGGGSGVSTAAAGTVASVEPGHVPVGVSPPRVPLSGRPRGIKAVLSSELEPVTEIPGEG--DTDDDGLGG 693
ED+A +DW LDV+GVQVVVADASS LG AS+ + GP+ A+ DTAI+E DLNV+++TATD +TNGL+GVR++A+LPRLSCN+HSSAYLLLTRLLKNEL RP AA PP S + RGAVASR FP S + S+ PG P G RPR IKAVL+SELEPVTE+PGEG + DDG+GG
Sbjct: 974 EDIAQDDWLLDVTGVQVVVADASSFLGPASSDN------GPSANKAALSNDTAIVEEVDLNVKVRTATDLSTNGLIGVRVEANLPRLSCNVHSSAYLLLTRLLKNELERPTTAA-GADRFPPESPLVSSSREEERMTRVPQTGTRGAVASRLFPASATP-----------------SLSPGS-PGGTQ--------RPRLIKAVLASELEPVTEVPGEGPLEDSDDGVGG 1170
BLAST of mRNA_C-linearis_contig103.851.1 vs. uniprot
Match:
A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE)
HSP 1 Score: 125 bits (314), Expect = 2.940e-29
Identity = 68/103 (66.02%), Postives = 85/103 (82.52%), Query Frame = 1
Query: 25 EDVALNDWRLDVSGVQVVVADASSVLGAASASSSVGKAEGPTPTPASDTAIIEGFDLNVQIQTATDRTTNGLVGVRLQASLPRLSCNIHSSAYLLLTRLLKNE 333
EDVA +DW LDV+GVQVVVADASS LGAAS+ + A+ ++DTAI+E FDLNV+++TATD +TN L+G+R +A+LPRLSCN+HSSAYLLLTRLLKNE
Sbjct: 74 EDVAQDDWLLDVTGVQVVVADASSFLGAASSDNRQSAAKAAL---SNDTAIVEEFDLNVKVRTATDLSTNCLIGIRAEANLPRLSCNVHSSAYLLLTRLLKNE 173
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.851.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 7.69e-44 / Id = 50.87 Expect = 2.94e-29 / Id = 66.02 Sequence D7FMF5_ECTSI A0A6H5JYL2_9PHAE
Match Name E-value Identity Description
D7FMF5_ECTSI 7.690e-44 50.87 FYVE-type domain-containing protein n=1 Tax=Ectoca... [more] A0A6H5JYL2_9PHAE 2.940e-29 66.02 FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 169.9 Seed ortholog evalue 1.4e-39 Seed eggNOG ortholog 2880.D7FMF5 Hectar predicted targeting category other localisation EggNOG free text desc. regulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization EggNOG OGs COG5043@1,KOG1809@2759 COG Functional cat. U Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 4 Model size 693 Cds size 693 Stop 0 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622927379.3323715-CDS-C-linearis_contig103:477248..477610 1622927379.3323715-CDS-C-linearis_contig103:477248..477610 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 477249..477610 - 1690879665.4880903-CDS-C-linearis_contig103:477248..477610 1690879665.4880903-CDS-C-linearis_contig103:477248..477610 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 477249..477610 - 1622927379.3431985-CDS-C-linearis_contig103:478019..478146 1622927379.3431985-CDS-C-linearis_contig103:478019..478146 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 478020..478146 - 1690879665.5016048-CDS-C-linearis_contig103:478019..478146 1690879665.5016048-CDS-C-linearis_contig103:478019..478146 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 478020..478146 - 1622927379.4124646-CDS-C-linearis_contig103:478633..478765 1622927379.4124646-CDS-C-linearis_contig103:478633..478765 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 478634..478765 - 1690879665.511946-CDS-C-linearis_contig103:478633..478765 1690879665.511946-CDS-C-linearis_contig103:478633..478765 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 478634..478765 - 1622927379.4207838-CDS-C-linearis_contig103:479168..479240 1622927379.4207838-CDS-C-linearis_contig103:479168..479240 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 479169..479240 - 1690879665.523262-CDS-C-linearis_contig103:479168..479240 1690879665.523262-CDS-C-linearis_contig103:479168..479240 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig103 479169..479240 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.851.1
>prot_C-linearis_contig103.851.1 ID=prot_C-linearis_contig103.851.1|Name=mRNA_C-linearis_contig103.851.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=231bp
MVAAEGGSEDVALNDWRLDVSGVQVVVADASSVLGAASASSSVGKAEGPT back to top mRNA from alignment at C-linearis_contig103:477249..479240-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig103.851.1 ID=mRNA_C-linearis_contig103.851.1|Name=mRNA_C-linearis_contig103.851.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1992bp|location=Sequence derived from alignment at C-linearis_contig103:477249..479240- (Chordaria linearis ClinC8C monoicous)ATGGTGGCAGCGGAGGGGGGCTCAGAGGATGTGGCTCTGAACGACTGGCG
GCTGGACGTTTCCGGGGTGCAG GTGCGGCGGAATACGTGGGCATGCGGCG
GAGTTAGACCTTGCGCTGGAATGGATCTTCTCTATTTCTAAGTGTTTTCC
GTCGGCACCACAGTAGTGCCGAGATCACCTCTGGAGTCTGGGACGGTGAG
GGAGGGGGGGGTTACACGGTGGTTCTACAACAGCGCCCCCTGGAACGACC
TTTTCACAGGCCGGGCGTATACCGCTGACTTTCGGTAGAAAAGTTCGTAC
TTCGAAGTATTAGTTTTGAAAAGAAAATCAGGAAATCAAAGACGGAACCC
CCCCACATGGGAGACGGGGCTCTGTGGGCTATAAACGGTATTCCATGCCG
TGATGTAAGAAATCTTTTGTTCGCTGCCTCTGCGCTGCGGCGCGTGCTTT
CTAATTGGCCCATTTTTCTTGGAAGGTGGTGGTGGCCGACGCTTCTTCGG
TATTAGGAGCAGCGTCGGCGTCGTCCTCTGTCGGCAAGGCGGAGGGGCCC
ACCCCCACGCCCGCTTCTGACACCGCCATCATCGAGGGCTTCGACCTAAA
CGTTCAG GTAAGCCCATGACGGGTTTTGACCCAAAACGTCCGGCTCACTG
CGTAATCAACCATACCCCTCCCGTGATTGAGGAGGTCCACCCGTCGTCAT
ATTTTCGATGACAGGTGGGTCATAGCGGCGGCCTTCTGTCCACTGCAAGT
TATTTTGATGGCCGTGACGGCGTTGGAAGAGGGAAGAGCCTGCCTGCCAA
GGAGATGTCCTTACGGGGTTCGAGGGAGTCAGGCCAATATCTGGCAGCGA
GGGAAAAAAATCAGTTTTTGGGAATGGCAACCATTCATCATTCATGCATG
GCAGGAGTGGGTGATTTTGATGGTTACAACAATGGTGGCGGTGGTAGAGA
TGAGACAGCAGTAGTGATACTGATGATGATGAATATGATGATGATGATGA
TGATGATGATGATTATGAGTACTCCGTGTCTTGCGTCCGCCCGTGTTTTG
GGGTTGTCGTTTCGTCGTTGGTGTCTCGTTTTTATTTTTTGCAGATCCAA
ACTGCCACGGACCGCACGACGAACGGCCTCGTTGGCGTCCGGCTACAGGC
CAGCCTCCCGCGCCTCAGCTGCAACATCCACAGCTCCGCGTATCTGCTAC
TGACCAGGCTGCTCAAGAACG GTGCGCGGTTGAAGCTTGTCGAATCTGTT
GTTTGTGTGTTTGGTTGTTGTTGTGGGTATTGTGGGTATTGTGGGTGTTG
TTGGTGTTGCTGCTGGCGTTCTTTCTGCGCTACAGTAGCGGTTTCGGCGG
GATTGTTCGTTGTTGCTGTCACTGTCACCAGCTTAGTTCAATGCCGAGCT
GGTTTAGTTCAATACCGGGATGGTTTGGTTCTGGTTTCGAACAAGCTGCT
TACTGCTGTTTCTAGGAGGATGCCCCGTGTCGCGCCCGGATGGGCTTTCG
AACCGAACCGGTTTGCTCTCTCAGTACACTAGCTCTGTACCAACTACCCT
CCACCGTATCAACGATTGAATCACCTAACCTCTCCACCCCCACCGCGACG
TCAACCCCCCCGGTCATCCGCCAACCTCAGAGCTCTCCCGCCCAGCGGCA
GCAGCGCCTTCCACGGGCACACAGCCTCCGGCGTCCAACTCCGCCGCTGA
AGCGACCGCACAAGCACCACCACCAGGAGGAGGCAGCAGCCGAGGGGCTG
TCGCCTCTCGACCATTCCCGATCTCAACTTCTTCCCCCGCTGGGGGCGGT
TCCGGTGTTTCGACAGCTGCCGCGGGGACCGTAGCTTCCGTGGAGCCGGG
GCATGTCCCCGTTGGGGTGTCGCCGCCCCGTGTGCCGTTGTCCGGGCGGC
CCCGCGGAATCAAGGCTGTCCTCTCGTCGGAACTAGAGCCCGTTACCGAA
ATACCAGGAGAGGGCGACACGGACGACGATGGCCTTGGAGGG back to top Coding sequence (CDS) from alignment at C-linearis_contig103:477249..479240-
>mRNA_C-linearis_contig103.851.1 ID=mRNA_C-linearis_contig103.851.1|Name=mRNA_C-linearis_contig103.851.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1386bp|location=Sequence derived from alignment at C-linearis_contig103:477249..479240- (Chordaria linearis ClinC8C monoicous) back to top