mRNA_C-linearis_contig103.849.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.849.1 vs. uniprot
Match: D7FMF5_ECTSI (FYVE-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF5_ECTSI) HSP 1 Score: 132 bits (331), Expect = 1.030e-30 Identity = 118/305 (38.69%), Postives = 138/305 (45.25%), Query Frame = -2 Query: 7 RKLLSPGQAVPLAFHAPAPAERARVPGTPGFAPGDTPAXXXXXXXXXXXXXXXXXXXXDEAGVGRGGRRGGGVEK-QAGDEGRASPGLATXXXXXXXXXXXXXXXSCFRWEKMSWPDGGRTNSLEVSGSSLLLSGVGWRRWRGWAAATAGGSDPAEEGKGDNDRQPGEPGRRQHQGDPGQEAVAVEWQGSRVNPLGERAASHIDGATAPHMEEGGRSSKAAVSSEEAGPAGTT-----------DDSGLIAELASALDVRLSQTCLVLQPWNYGGGYDR--VEGRDGRKNWDSACNEGGRRESIV 879
RKLLSPGQ VPL+ A AP A+VPG A GD A + G + G GV Q GD ASP +CFRW+K SWPDGGRTNSL VSG+S+LLS VGW RWR WAAA G D D + ++ Q G+E G GER A ID ATA G+ S +A PA D+GLIAELA A DV LS+TCL+L+PWNY G DR V G G W EGG ++V
Sbjct: 2095 RKLLSPGQIVPLSLCASAPLVGAQVPG----ATGDIGAGAATAATSDDTGNNITVRTDGQRGRATSDKVGDGVAPPQEGDSDTASP------PGSGAPSPGARSGACFRWKKRSWPDGGRTNSLAVSGASVLLSKVGWGRWRVWAAAATGSGDXXXXXLSPKDESAKQ---KRQQVVAGEETTGTGTPG--WTSFGEREAPPID-ATA----SAGKVSNSATQGSNLEPANVAVGIARADPLAASDTGLIAELAFAFDVNLSETCLILEPWNYDSGCDRSGVCGMGGDNGW-----EGGDGAAVV 2374
BLAST of mRNA_C-linearis_contig103.849.1 vs. uniprot
Match: A0A6H5JYL2_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYL2_9PHAE) HSP 1 Score: 109 bits (272), Expect = 6.400e-23 Identity = 107/292 (36.64%), Postives = 124/292 (42.47%), Query Frame = -2 Query: 46 RKLLSPGQAVPLAFHAPAPAERARVPGTPGFAPGDTPAXXXXXXXXXXXXXXXXXXXXDEAGVGRGGRRGGGVEK-QAGDEGRASPGLATXXXXXXXXXXXXXXXSCFRWEKMSWPDGGRTNSLEVSGSSLLLSGVGWRRWRGWAAATAGGSDPAEEGKGDNDRQPGEPGRRQHQGDPGQEAVAVEWQGSRVNPLGERAASHIDGATAPHMEEGGRSSKAAVSSEEAGPAGTT-----------DDSGLIAELASALDVRLSQTCLVLQPWNYGGGYDR--VEGRDGRKNWD 879
RKLLSPGQ VPL+ A AP +VPG A GDT A + G + G GV Q D SP +CFRW+K SWP GGRTNSL VSG+S+LLS VGW RWR WAA GQE G V GER A D ATA G+ S +A PA D+G+IAELASA DV LS+TCL+L+PWN G DR V GR G +W+
Sbjct: 1417 RKLLSPGQIVPLSLCASAPLVGVQVPG----AAGDTGAAAATAATSEDTGNKISVRTDGQRGRATSDKVGDGVAPLQEDDSDTVSP------LGSRAPSPGARSGACFRWKKRSWPGGGRTNSLAVSGASVLLSKVGWDRWRVWAAXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXGQETTDTGPPG--VTSFGEREAPPND-ATA----SAGKLSNSATQGSNLEPANVAVGITSADPLAASDAGMIAELASAFDVNLSETCLILEPWNCDSGRDRSGVCGRGGDNDWE 1689 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.849.1 >prot_C-linearis_contig103.849.1 ID=prot_C-linearis_contig103.849.1|Name=mRNA_C-linearis_contig103.849.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=210bp MCGAVAPSMCDAARSPRGFTLDPCHSTATASCPGSPWCCRLPGSPGWRSLback to top mRNA from alignment at C-linearis_contig103:469455..470334+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.849.1 ID=mRNA_C-linearis_contig103.849.1|Name=mRNA_C-linearis_contig103.849.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=880bp|location=Sequence derived from alignment at C-linearis_contig103:469455..470334+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:469455..470334+ >mRNA_C-linearis_contig103.849.1 ID=mRNA_C-linearis_contig103.849.1|Name=mRNA_C-linearis_contig103.849.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1260bp|location=Sequence derived from alignment at C-linearis_contig103:469455..470334+ (Chordaria linearis ClinC8C monoicous)back to top |