mRNA_C-linearis_contig103.826.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig103.826.1 vs. uniprot
Match: A0A6H5KU51_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU51_9PHAE) HSP 1 Score: 563 bits (1451), Expect = 2.000e-192 Identity = 264/295 (89.49%), Postives = 283/295 (95.93%), Query Frame = 2 Query: 287 VGLAQGYFGVYDGHCGPEAVQFVRDQLHARVGEHPFFWKDPERAMREAFLSLDENFLALAGERDWYSGTTVLVALMRGRKLLIGNVGDCEAVLCRGDDLVHLSPVHSPARPCENERILAANGWVTTERELFLRQLKQMDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRRLEQGTEGAPPLDMPVLFAWPHGHSGEFYDDLLTAEPEFEETEIGLDDEFLLMACDGLWDVLGKREAVDHAKNFFDEGMCSQAVAERMCELAYRMGTSDNVTVVIVQFHHFRP 1171 VGLAQGYFGVYDGHCG EAVQ VRD+LHA +GEHP FW++P+RA+RE+F+SLDE FL LAGER+WYSGTTVL+ALMRGRKLLIGNVGD EAVLCRGDD+VH+SPVH PARPCE++RI+AANGWVTTERELFLRQLKQMDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRRLEQGT+G P DMPVLFAWPHGHSGEF+DDLLTAEPEF+E EIGLDDEFLLMACDGLWDVLGKREAVD+AKNFFDEGMCSQAVAERMCELAYRMGTSDNVTVVIVQFHHFRP Sbjct: 87 VGLAQGYFGVYDGHCGSEAVQNVRDRLHAVIGEHPSFWEEPKRAIRESFVSLDEQFLLLAGEREWYSGTTVLIALMRGRKLLIGNVGDGEAVLCRGDDVVHMSPVHDPARPCEHDRIIAANGWVTTERELFLRQLKQMDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRRLEQGTDGVAPEDMPVLFAWPHGHSGEFHDDLLTAEPEFQEAEIGLDDEFLLMACDGLWDVLGKREAVDYAKNFFDEGMCSQAVAERMCELAYRMGTSDNVTVVIVQFHHFRP 381
BLAST of mRNA_C-linearis_contig103.826.1 vs. uniprot
Match: D8LKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD5_ECTSI) HSP 1 Score: 452 bits (1163), Expect = 9.970e-142 Identity = 219/265 (82.64%), Postives = 234/265 (88.30%), Query Frame = 2 Query: 269 DGVGGEVGLAQGYFGVYDGHCGPEAVQFVRDQLHARVGEHPFFWKDPERAMREAFLSLDENFLALAGERDWYSGTTVLVALMRGRKLLIGNVGDCEAVLCRGDDLVHLSPVHSPARPCENERILAANGWVTTERELFLRQLKQMDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRRLEQGTEGAPPLDMPVLFAWPHGHSGEFYDDLLTAEPEFEETEIGLDDEFLLMACDGLWDVLGKREAVDHAKNFFDE 1063 DGVGGEVGLAQGYFGVYDGHCG EAVQ+VRD+LHA VGEHP FWK+P+RA+RE+F+SLDE FL LAGER+WYSGTTVLVALMRGRKLLIGNVGD EAVLCRGDD+VH+SPVH P ELFLRQLKQMDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRR+EQGT+G P DMPVLFAWPHGHSGEF+DDLLTAEPEF+E EIGLDDEFLLMACDGLWDVLGKREAVD+AKNFFDE Sbjct: 696 DGVGGEVGLAQGYFGVYDGHCGSEAVQYVRDRLHAVVGEHPSFWKEPKRAIRESFVSLDEQFLLLAGEREWYSGTTVLVALMRGRKLLIGNVGDGEAVLCRGDDVVHMSPVHDP--------------------ELFLRQLKQMDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRRVEQGTDGVAPEDMPVLFAWPHGHSGEFHDDLLTAEPEFQEAEIGLDDEFLLMACDGLWDVLGKREAVDYAKNFFDE 940
BLAST of mRNA_C-linearis_contig103.826.1 vs. uniprot
Match: A0A7S2REK4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REK4_9STRA) HSP 1 Score: 274 bits (701), Expect = 1.700e-76 Identity = 144/288 (50.00%), Postives = 179/288 (62.15%), Query Frame = 2 Query: 308 FGVYDGHCGPEAVQFVRDQLHARVGEHPFFWKDPERAMREAFLSLDENFLALAGERDWYSGTTVLVALMR--GRKLLIGNVGDCEAVLCRGDDLVHLSPVHSPARPCENERILAANGWVTTERELFLRQLKQMDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRRLEQGTEGAPPLDMPVLFAWPHGHSGEFYDDLLTAEPEFEETEIGLDDEFLLMACDGLWDVLGKREAVDHAKNFFD---EGMCSQAVAERMCELAYRMGTSDNVTVVIVQF 1156 +GVYDGHCG EA LH + EH P +R+AFL LD FL LA +R+ Y GTT +V L+ GR++ + NVGD AVLCRG V LS H P RP E ERI AANGW+T ERELF+ QL +MDL DP+IR AA E V+W TI+RVCGELAVSRSIGD DFKG P + F +P GHS F DL+ AEP+ E E+ DEF+++A DGLWDVL ++ VD ++F E Q VA +C LA R+G++DN+TVV+V F Sbjct: 503 YGVYDGHCGSEAADVAARDLHTYIFEHEALQTSPLTTLRDAFLRLDREFLELARDRNLYCGTTAIVMLLLDGGRRMFVSNVGDSAAVLCRGGQAVELSQSHKPDRPDEKERIAAANGWITEERELFMGQLHRMDLKDPKIRSAAEEVVQWVTISRVCGELAVSRSIGDPDFKGIA----------GPEPSQDLFFCFPQGHSRTFSADLVIAEPDIESFEVSPGDEFVVLASDGLWDVLNGQQVVDAVRDFQQAEPESTLDQ-VAHHLCRLALRLGSADNITVVVVAF 779
BLAST of mRNA_C-linearis_contig103.826.1 vs. uniprot
Match: W7TA28_9STRA (Protein phosphatase 1e n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TA28_9STRA) HSP 1 Score: 257 bits (656), Expect = 2.110e-73 Identity = 141/320 (44.06%), Postives = 184/320 (57.50%), Query Frame = 2 Query: 215 DPATSASXXXSAAGGLRLDGVGGEVGLAQGYFGVYDGHCGPEAVQFVRDQLHARVGEHPFFWKDPERAMREAFLSLDENFLALAGERDWYSGTTVLVALMRGRKLLIGNVGDCEAVLCRGDDLVHLSPVHSPARPCENERILAANGWVTTERELFLRQLKQMDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRRLEQG---TEGAPPLDMPVLFAWPHGHSGEFYDDLLTAEPEFEETEIGLDDEFLLMACDGLWDVLGKREAVDHAKNFFDEGMCSQAVAERMCELAYRMGTSDNVTVVIVQFHHF 1165 D A AS AA GL +G G E + ++ +YDGHCG A ++ + + H + P F PE AM LD+ L + + Y GTT ++ RGR + +GNVGDC A+LCR LS +P R E ERI ANGWVT E ELF+ QL +MDL DP I A + V TI RVCG L+VSRSIGD DFKGF+ E+G TE + +FA+P GHSG F+ DL+ A+PE + + D FLL+ACDG WDV+ + EAV A G+ VA ++ LA R+G+SDNVTVV+V F H+ Sbjct: 116 DLAGVASGETGAAQGLPKEGQG-EQAEMEAFYAIYDGHCGIGAARYAQQRTHHYLMADPLFVSSPEAAMVNVCRRLDKEVLEMCEQEGLYCGTTAILTFFRGRTVYVGNVGDCAAILCRDGKAFPLSSAQTPGRKDERERIERANGWVTEEMELFIGQLHRMDLADPSIAEAVDKKVAVNTIHRVCGNLSVSRSIGDPDFKGFSPHPGEEGLGGTEAGEAGEEDSIFAFPPGHSGVFHGDLVIADPETRQITVSEADAFLLVACDGFWDVVDEEEAVAQATGLLAGGLGVSDVAAQLGNLALRLGSSDNVTVVLVVFEHW 434
BLAST of mRNA_C-linearis_contig103.826.1 vs. uniprot
Match: A0A4D9CQ52_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQ52_9STRA) HSP 1 Score: 259 bits (663), Expect = 6.060e-70 Identity = 142/320 (44.38%), Postives = 184/320 (57.50%), Query Frame = 2 Query: 215 DPATSASXXXSAAGGLRLDGVGGEVGLAQGYFGVYDGHCGPEAVQFVRDQLHARVGEHPFFWKDPERAMREAFLSLDENFLALAGERDWYSGTTVLVALMRGRKLLIGNVGDCEAVLCRGDDLVHLSPVHSPARPCENERILAANGWVTTERELFLRQLKQMDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRRLEQ---GTEGAPPLDMPVLFAWPHGHSGEFYDDLLTAEPEFEETEIGLDDEFLLMACDGLWDVLGKREAVDHAKNFFDEGMCSQAVAERMCELAYRMGTSDNVTVVIVQFHHF 1165 D A AS AA GL +G G E + ++ +YDGHCG A ++ + Q H + P F PE AM LD+ L + + Y GTT ++ RGR + +GNVGDC A+LCR LS +P R E ERI ANGWVT E ELF+ QL +MDL DP I A + V TI RVCG L+VSRSIGD DFKGF+ E+ GTE + +FA+P GHSG FY DL+ A+PE + + D FLL+ACDG WDV+ + EAV A G+ VA ++ LA R+G+SDNVTV++V F H+ Sbjct: 652 DLAGVASGEMGAAQGLPKEGQG-EQAEMEAFYAIYDGHCGIGAARYAQQQTHHYLMADPLFVSSPEAAMVNVCRRLDKEVLEMCEQEGLYCGTTAILTFFRGRTVYVGNVGDCAAILCRDGKAFPLSSAQTPGRKDERERIERANGWVTEEMELFIGQLHRMDLADPSIAEAVDKKVAVNTIHRVCGNLSVSRSIGDPDFKGFSSHPGEESLGGTEAGEAGEEDSIFAFPPGHSGVFYGDLVIADPETRQITVSEADAFLLVACDGFWDVVDEEEAVAQATGLLAGGLGVSDVAAQLGNLALRLGSSDNVTVLLVVFEHW 970
BLAST of mRNA_C-linearis_contig103.826.1 vs. uniprot
Match: A0A835ZH46_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH46_9STRA) HSP 1 Score: 220 bits (560), Expect = 1.700e-63 Identity = 101/158 (63.92%), Postives = 121/158 (76.58%), Query Frame = 2 Query: 698 MDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRRLEQGTEGAPPLDMPVLFAWPHGHSGEFYDDLLTAEPEFEETEIGLDDEFLLMACDGLWDVLGKREAVDHAKNFFDEGMCSQAVAERMCELAYRMGTSDNVTVVIVQFHHFRP 1171 MDL DP IR A+E V+WTTITR CGEL+VSR+IGDRDFKGFT+RR+E GT G PP + P LF WP HSGEFYDDLL A P+F E EI +D+FLL+ACDGLWDVL +AV H D+G+C+Q A+++CELA R+GTSDNVTV+IV HH P Sbjct: 1 MDLQDPVIRSMASEQVKWTTITRTCGELSVSRAIGDRDFKGFTRRRMEAGTRGVPP-ENPALFLWPQNHSGEFYDDLLVAHPDFHEEEITDEDQFLLLACDGLWDVLSHGDAVKHTLELLDQGLCAQGAAQQLCELATRLGTSDNVTVIIVSLHHHPP 157
BLAST of mRNA_C-linearis_contig103.826.1 vs. uniprot
Match: F0WZ08_9STRA (Protein phosphatase 1E putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WZ08_9STRA) HSP 1 Score: 229 bits (585), Expect = 1.850e-59 Identity = 118/287 (41.11%), Postives = 166/287 (57.84%), Query Frame = 2 Query: 299 QGYFGVYDGHCGPEAVQFVRDQLHARVGEHPFFWKDPERAMREAFLSLDENFLALAGERDWYSGTTVLVALMRGRKLLIGNVGDCEAVLCRGDDLVHLSPVHSPARPCENERILAANGWVTTERELFLRQLKQMDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRRLEQGTEGAPPLDMPVLFAWPHGHSGEFYDDLLTAEPEFEETEIGLDDEFLLMACDGLWDVLGKREAVDHAKNFFDEGMCSQAVAERMCELAYRMGTSDNVTVVIVQFH 1159 Q + ++DGH G +A QF D+L A + H F+ + RA E F +D+ FLA A W +GTTV + +RG KLL N+GD AV+C G+D + + +P R E +RI GWV EREL + +L MDL DP+I+ A VRW I RV GELAVSR+IGD ++KG L +A+P GH F+ DL+ PEF+E EI D FL++ACDGLWD + +EAV H + +G ++ + + LA R G+SDNV+V++V+F+ Sbjct: 732 QAIYALFDGHAGVQAAQFANDRLAAYICAHHDFYSNTRRAFDECFRRVDKEFLAQAAIEKWSAGTTVALVFIRGNKLLTANIGDSRAVVCLGEDALDVIEEQTPGRKDERDRIEQQGGWVKEERELHISKLHSMDLSDPRIKEKAERIVRWVHIYRVNGELAVSRAIGDLEYKGRA-------------LSEYAFWAFPEGHDRVFHGDLVIPVPEFKEIEITSDVAFLILACDGLWDTITSQEAVRHVRERLQKGETAEIASRSLANLAIRSGSSDNVSVIVVRFN 1005
BLAST of mRNA_C-linearis_contig103.826.1 vs. uniprot
Match: H3HE73_PHYRM (Uncharacterized protein n=9 Tax=Phytophthora TaxID=4783 RepID=H3HE73_PHYRM) HSP 1 Score: 222 bits (565), Expect = 1.890e-58 Identity = 119/284 (41.90%), Postives = 161/284 (56.69%), Query Frame = 2 Query: 299 QGYFGVYDGHCGPEAVQFVRDQLHARVGEHPFFWKDPERAMREAFLSLDENFLALAGERDWYSGTTVLVALMRGRKLLIGNVGDCEAVLCRGDDLVHLSPVHSPARPCENERILAANGWVTTERELFLRQLKQMDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRRLEQGTEGAPPLDMPVLFAWPHGHSGEFYDDLLTAEPEFEETEIGLDDEFLLMACDGLWDVLGKREAVDHAKNFFDEGMCSQAVAERMCELAYRMGTSDNVTVVIV 1150 Q Y+ ++DGH G A F +L + H F D A E F +D+ FLA A E GTTV V L+RG +L+ N+GDC AV+ G + + +P R E +RI GWV EREL L +L MDL DP+I+ A V+W TI RV GELAVSR+IGD D+KG + E +A+P GH F+ DL+ + PE +E EI + +FL++ACDGLWD + REAV + + +EG +Q ++ + LA R G+SDNVTVVIV Sbjct: 392 QSYYALFDGHSGVRAATFSNQRLLPYLTSHEHFMSDARIAFEECFARIDKEFLAKAEEESLDDGTTVAVVLIRGNRLITANIGDCRAVVSIGGQALDIIEEQTPGREDERKRIEEQGGWVKEERELQLSKLHSMDLSDPEIQQRAERVVKWVTIYRVNGELAVSRAIGDIDYKGEALSKYE-------------YWAFPEGHDRVFHGDLVISMPECQEIEITPEFDFLILACDGLWDTIKSREAVTYVADRLNEGYSAQQASQSLANLAIRSGSSDNVTVVIV 662
BLAST of mRNA_C-linearis_contig103.826.1 vs. uniprot
Match: A0A2D4C4D2_PYTIN (Protein phosphatase 1E, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4D2_PYTIN) HSP 1 Score: 209 bits (532), Expect = 3.890e-58 Identity = 110/270 (40.74%), Postives = 156/270 (57.78%), Query Frame = 2 Query: 341 AVQFVRDQLHARVGEHPFFWKDPERAMREAFLSLDENFLALAGERDWYSGTTVLVALMRGRKLLIGNVGDCEAVLCRGDDLVHLSPVHSPARPCENERILAANGWVTTERELFLRQLKQMDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRRLEQGTEGAPPLDMPVLFAWPHGHSGEFYDDLLTAEPEFEETEIGLDDEFLLMACDGLWDVLGKREAVDHAKNFFDEGMCSQAVAERMCELAYRMGTSDNVTVVIV 1150 A F ++L A +GEH F + +A + F +DE FL A G+T V L+RG KLL N+GD AV+ + + +P R E RI GW+ EREL + +L MDL DP+I+ A VRW TI RV GELAVSR+IGD D+KG + E +A+P GH +F+ DL+T EPEF+E EI + +FL++ACDGLWD + +EAV+H ++EG + +++ + +LA R G+SDNV+VV+V Sbjct: 5 AATFTNEKLLAYLGEHEAFMSNARQAFSDCFRRIDEEFLQRAASESLSDGSTAAVVLIRGNKLLTANLGDSRAVVSINGTALDVIEEQTPGRADERSRIERCGGWIKEERELQMSKLHSMDLSDPRIQQKAERVVRWVTIYRVNGELAVSRAIGDIDYKGQALQDYE-------------FWAFPEGHDRKFHGDLVTCEPEFKEIEITPEVKFLILACDGLWDTITSQEAVNHVTEKWEEGWSATSISRSLADLAIRSGSSDNVSVVVV 261
BLAST of mRNA_C-linearis_contig103.826.1 vs. uniprot
Match: A0A3F2RU78_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RU78_9STRA) HSP 1 Score: 207 bits (526), Expect = 3.260e-57 Identity = 110/267 (41.20%), Postives = 152/267 (56.93%), Query Frame = 2 Query: 350 FVRDQLHARVGEHPFFWKDPERAMREAFLSLDENFLALAGERDWYSGTTVLVALMRGRKLLIGNVGDCEAVLCRGDDLVHLSPVHSPARPCENERILAANGWVTTERELFLRQLKQMDLDDPQIRMAATEHVRWTTITRVCGELAVSRSIGDRDFKGFTKRRLEQGTEGAPPLDMPVLFAWPHGHSGEFYDDLLTAEPEFEETEIGLDDEFLLMACDGLWDVLGKREAVDHAKNFFDEGMCSQAVAERMCELAYRMGTSDNVTVVIV 1150 F +L + + H F D A E F +DE FL A E GTT V L+RG +L+ N+GDC AV G + + + +P RP E ERI A GWV EREL L +L MDL DP+I+ A V+W TI RV GELAVSR+IGD D+KG + E +A+P GH EF DL+ + PE++E EI + +FL++ACDGLWD + +EAV + +EG ++ ++ + LA R G+SDNV+V++V Sbjct: 2 FSNQRLVSYLCAHDSFMTDTRLACEECFARIDEEFLVKAKEESLGDGTTAAVVLIRGNRLITANIGDCRAVASIGGEALDIIEEQTPGRPDERERIEAQGGWVKEERELQLSKLHSMDLSDPEIQQRAERVVKWVTIYRVNGELAVSRAIGDIDYKGEALSKYE-------------YWAFPEGHDREFRGDLVISVPEYQEIEITPEFDFLVLACDGLWDTIKSKEAVKYVSERLNEGYSAKQASQSLANLAIRSGSSDNVSVIVV 255 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.826.1 >prot_C-linearis_contig103.826.1 ID=prot_C-linearis_contig103.826.1|Name=mRNA_C-linearis_contig103.826.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=339bp MPRLSSSPAGGGDGRLTVDPATSASAAASAAGGLRLDGVGGEVGLAQGYFback to top mRNA from alignment at C-linearis_contig103:169353..174740- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.826.1 ID=mRNA_C-linearis_contig103.826.1|Name=mRNA_C-linearis_contig103.826.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5388bp|location=Sequence derived from alignment at C-linearis_contig103:169353..174740- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:169353..174740- >mRNA_C-linearis_contig103.826.1 ID=mRNA_C-linearis_contig103.826.1|Name=mRNA_C-linearis_contig103.826.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2034bp|location=Sequence derived from alignment at C-linearis_contig103:169353..174740- (Chordaria linearis ClinC8C monoicous)back to top |