mRNA_C-linearis_contig103.824.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig103.824.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 1.000e-13 Identity = 122/336 (36.31%), Postives = 163/336 (48.51%), Query Frame = 1 Query: 196 PMGNLRQAASDGSIERTIALLSQGSIDIDELDKDGQTPLMHAASQGHKTVARILLSRGANVSIARKIXXXXXXXXXXXXXXXXXXXXXXXXSDLEAMSFSIGATPLHLAAQRTLGGDESADRDRRRCRQPLLGGGVQYTATPRGWGRARRGGKGAAP------------------GESEPVVGFHGSGVGGHYSPVGLGGDNGARGGGQ---------GDDTAGGDPGLWRWRRRGTCSCRCCGDFLALLTDVGVADTGEALVKAAARGSEATVMFLLQXXXXXXXXXKSTGGGAYVNATDARGATPLVGGILGCQPRSRVMRLLIDAGAGTTSPV 1122 P L+ AA GS + LL+ G+ DID+ ++ G TPLM A+ G+ + R+LL++GA V + XXXXXXXXXXXXXXXXXXXXXXXX+ L+A + TPL AA+ +A LL G R GA P +++P++ + P+ + NG R + G D GG G R+ R D +A+LTD GV DTG ALV AA G EA + FLL+ KST AY+N + G T L+ GI C+PR V++LL++AGA TTSPV Sbjct: 14 PSNPLQAAADCGSFKTAANLLASGAFDIDQGNEVGWTPLMMASRGGYPRIVRMLLNKGAQVWVTDXXXXXXXXXXXXXXXXXXXXXXXXXXALLDAATKQNHCTPLDCAAETGCAASVTA----------LLKAGSNINT---------RRSDGATPLYTAAWNGNVVAVWLLLLAKADPLLTCASDSGKERFLPLDVAAQNGHR---EVVNELIRQVGIDGCGGSSGGENALRQAALFSRL--DIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQARGR----KSTDRAAYMNTLNGVGLTSLLDGIQRCRPR--VVQLLVEAGADTTSPV 319
BLAST of mRNA_C-linearis_contig103.824.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI) HSP 1 Score: 85.1 bits (209), Expect = 1.040e-13 Identity = 100/333 (30.03%), Postives = 138/333 (41.44%), Query Frame = 1 Query: 199 MGNLRQAASDGSIERTIALLSQGSIDIDELDKDGQTPLMHAASQGHKTVARILLSRGANVSIARKIXXXXXXXXXXXXXXXXXXXXXXXX-SDLEAMSFSIGATPLHLAAQRTLGGDESADRDRRR---CRQPLLGGGVQYTATPRGWGRARRGGKGAA---------PGESEPV----VGFHGSGVGGHYSPV-------GLGGDNGARGGGQGDDTAGGDPGLWRWRRRGTCSCRCCGDFLALLTDVGVADTGEALVKAAARGSEATVMFLLQXXXXXXXXXKSTGGGAYVNATDARGATPLVGGILGCQPRS-RVMRLLIDAGAGTTSPV 1122 + L +A GS E T A+L+ G+++ID+ + G TPLM A GH +A++L+ +GANVSIA K +DL+A+ G+ PLH A C+ P + A R +G A PG + V HG H V G+ G + G A + L D +A+LT+ GV DTG+AL AA G EA+V FLL+ GAY+NA D G TPLV GC ++ R++R+L+DAGA TTSPV Sbjct: 106 LNQLHRAVLVGSAELTQAVLAGGTVEIDQRNSYGATPLMMAVHNGHSRIAKMLIKKGANVSIADKRGFTALHFCCAREEDDAIVKLLAKAGADLDAIIPGEGSAPLHRATHHEXXXXXXXXXXXXXNPDCQLPDGSTALHIAAEEGQVAVMRELLRGNANPLLIQTSPPGNTTTVPLDLAAKHG-----HTDVVRELIQELGIEGCDATSAGAHALAFAASNQHL---------------DIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVE---GAYLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPV 415
BLAST of mRNA_C-linearis_contig103.824.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 6.350e-10 Identity = 124/348 (35.63%), Postives = 159/348 (45.69%), Query Frame = 1 Query: 196 PMGNLRQAASDGSIERTIALLSQGSIDIDELDKDGQTPLMHAASQGHKTVARILLSRGANVSIARKIXXXXXXXXXXXXXXXXXXXXXXXXSDLEAMSF---------------------------------SIGATPLHLAAQRTLGGDESADRDRRRCRQPLLGGGVQYTATPRGWGRARRGGKGAAPGESEPVVGFHGSGVGGHYSPVGLGGDNGARGGGQGDDTAGGDPGLWRWRRRGTCSCRCCGDFLALLTDVGVADTGEALVKAAARGSEATVMFLLQXXXXXXXXXKSTGGGAYVNATDARGATPLVGGILGCQPRSRVMRLLIDAGAGTTSPVPMSTVL 1140 P L AA GS E T +L+ G+ DID+ ++ G T LM A+ G+ + ++L++GA VSI XXXXXXXXXXXXXXXXXXXXXXXX +EA + S GATPL+ AA + G ++A PLL T P GR AA VV VG+ G G+ GG + A L + + +LT+ GV DTG ALV AA G E + FLL+ K+ AYVN D G TPL+ GI +PR V+RLL++AGA TTSPV + L Sbjct: 14 PSNRLHAAAECGSFEATATVLASGAFDIDQGNEYGWTALMLASRGGYARIVGMILNKGAQVSITXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVEATTTQHLCXXXXXXXXXXXXXXXXXXXXXXXNLNSRRSDGATPLYTAAWK--GNVDAARLLLLAKADPLL------TTVPDPSGRTFLPLDAAAENGHPEVVNEL-------IRQVGIDGCGGSSGGVRALQQAAQFKNL---------------NIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARAR----KTMDEAAYVNTRDRGGVTPLLWGIQHYRPR--VVRLLVEAGADTTSPVAVRNQL 325
BLAST of mRNA_C-linearis_contig103.824.1 vs. uniprot
Match: D8LB36_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB36_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 8.090e-10 Identity = 47/97 (48.45%), Postives = 55/97 (56.70%), Query Frame = 1 Query: 850 FLALLTDVGVADTGEALVKAAARGSEATVMFLLQXXXXXXXXXKSTGGGAYVNATDARGATPLVGGILGCQP-RSRVMRLLIDAGAGTTSPVPMSTV 1137 + LLTD GV DTG AL+ AA G +V LLQ K AYVNA GATPL+ I C+P SR+ RLL+DAGA TTS V M+ V Sbjct: 162 MVLLLTDAGVVDTGGALITAAHYGGVVSVEHLLQRQKQTAAERK-----AYVNAPGLFGATPLLWSIQACRPCSSRIARLLVDAGADTTSTVTMADV 253
BLAST of mRNA_C-linearis_contig103.824.1 vs. uniprot
Match: A0A6H5JL33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL33_9PHAE) HSP 1 Score: 67.8 bits (164), Expect = 2.350e-8 Identity = 45/101 (44.55%), Postives = 56/101 (55.45%), Query Frame = 1 Query: 847 DFLALLTDVGVADTGEALVKAAARGSEATVMFLLQXXXXXXXXXKSTGGGAYVNATDAR---GATPLV----GGILGCQPRSRVMRLLIDAGAGTTSPVPM 1128 D +++L D GV DTGEAL+ AA R EA V LLQ S GG Y+ D G TPL+ GG+ G + RV+RLL+DAGA T S VP+ Sbjct: 235 DVMSVLADAGVMDTGEALITAAGRNDEAGVKLLLQQRHGT-----SAGGELYMYVNDTHDLVGRTPLLCSIDGGMAGFRCSPRVVRLLVDAGADTVSAVPL 330
BLAST of mRNA_C-linearis_contig103.824.1 vs. uniprot
Match: D7FXF2_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF2_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 2.370e-8 Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 1 Query: 847 DFLALLTDVGVADTGEALVKAAARGSEATVMFLLQXXXXXXXXXKSTGGGAYVNAT-DARGATPLVGGI-LGCQPRSRVMRLLIDAGAGTTSPVPMSTVL 1140 D +A+L DVGV D G ALV AAA G+EA+V FLLQ S+G AYVN+ G++PL G+ G +R++R+L+DAGA TTS V + + L Sbjct: 124 DVMAILVDVGVVDNGYALVGAAACGAEASVKFLLQQHDKKKHASASSG--AYVNSICHISGSSPLHYGMGFGEFYSARIVRMLVDAGADTTSRVRLRSSL 221
BLAST of mRNA_C-linearis_contig103.824.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 5.990e-8 Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 1 Query: 199 MGNLRQAASDGSIERTIALLSQGSIDIDELDKD-GQTPLMHAASQGHKTVARILLSRGANVSIARKIXXXXXXXXXXXXXXXXXXXXXXXXSDLEAMSFSIGATPLHLAAQR 531 + L AA+ GS+ERT+A+LSQGS+DID D G+TPLM A++ G+ V R+LL GA VS+A + +EA + TPLH+AA + Sbjct: 5 LSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEARG--VDGTPLHVAAAK 114
BLAST of mRNA_C-linearis_contig103.824.1 vs. uniprot
Match: D8LNF8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF8_ECTSI) HSP 1 Score: 63.5 bits (153), Expect = 2.150e-7 Identity = 47/112 (41.96%), Postives = 62/112 (55.36%), Query Frame = 1 Query: 196 PMGNLRQAASDGSIERTIALL-SQGSIDIDELDKDGQTPLMHAASQGHKTVARILLSRGANVSI-ARKIXXXXXXXXXXXXXXXXXXXXXXXXSDLEAMSFSIGATPLHLAA 525 P +L +AA+DGSIER +ALL S+ SIDI++ + G TPLM AA +G V RIL ++GANVS+ A +D EA++ S G TPLHL A Sbjct: 15 PQNDLHRAANDGSIERVVALLASRPSIDINQGAEYGWTPLMLAAWRGSSRVVRILPNKGANVSVVADDFHTALHFSTQDGGHPVVTKMLLKAGADFEAVT-SEGETPLHLVA 125
BLAST of mRNA_C-linearis_contig103.824.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 2.700e-7 Identity = 41/112 (36.61%), Postives = 59/112 (52.68%), Query Frame = 1 Query: 199 MGNLRQAASDGSIERTIALLSQGSIDIDELDKD-GQTPLMHAASQGHKTVARILLSRGANVSIARKIXXXXXXXXXXXXXXXXXXXXXXXXSDLEAMSFSIGATPLHLAAQR 531 + L AA+ GS+ERT+A+LSQGS++ID D G+TPLM A++ G+ V R+LL GA VS+A + +EA + TPLH+AA + Sbjct: 5 LSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARG--VDGTPLHVAAAK 114
BLAST of mRNA_C-linearis_contig103.824.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI) HSP 1 Score: 63.2 bits (152), Expect = 7.600e-7 Identity = 35/63 (55.56%), Postives = 41/63 (65.08%), Query Frame = 1 Query: 193 VPMGNLRQAASDGSIERTIALLSQGSIDIDELDKDGQTPLMHAASQGHKTVARILLSRGANVS 381 V + L +AA DGS T A+LS GSIDID D G TPLMHA H +V ILLS+GA+VS Sbjct: 13 VVINKLHEAARDGSTWLTAAILSTGSIDIDGGDSSGGTPLMHAICNDHPSVVSILLSKGASVS 75 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.824.1 >prot_C-linearis_contig103.824.1 ID=prot_C-linearis_contig103.824.1|Name=mRNA_C-linearis_contig103.824.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=321bp MGNLRQAASDGSIERTIALLSQGSIDIDELDKDGQTPLMHAASQGHKTVAback to top mRNA from alignment at C-linearis_contig103:133926..135916+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.824.1 ID=mRNA_C-linearis_contig103.824.1|Name=mRNA_C-linearis_contig103.824.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1991bp|location=Sequence derived from alignment at C-linearis_contig103:133926..135916+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:133926..135916+ >mRNA_C-linearis_contig103.824.1 ID=mRNA_C-linearis_contig103.824.1|Name=mRNA_C-linearis_contig103.824.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1926bp|location=Sequence derived from alignment at C-linearis_contig103:133926..135916+ (Chordaria linearis ClinC8C monoicous)back to top |