mRNA_C-linearis_contig103.818.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.818.1 vs. uniprot
Match: A0A6H5KVT2_9PHAE (Mitochondrial fission process protein 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT2_9PHAE) HSP 1 Score: 416 bits (1070), Expect = 1.980e-142 Identity = 228/284 (80.28%), Postives = 241/284 (84.86%), Query Frame = 2 Query: 56 MAAKVSCAALAMAAAVA-AGVTEAFVAPPVAGVARAGAWVGAQPSSSSSSWTSACRRAAGGGPRGEGTSMIAGAEAQVADTANLLFAQMAGCTGLISAGYKITWDKGADGGGEEGREEGEVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVVSYGVAIAYVSADAVAKGFKCSKESDSKACALPASFDVLTFQLLASVVFPGFTINRWVAFVEYMIQASDLETQFPGVNGWLPTAAGLGLIPFIVAPLDNLVEEVLDKTLRPFLLEKFPTCELEPIFGAEPLP 904
M KVS AA+A+A A A AGV EAFVA PVA R + SSSW S CR A+ GG RG G SMI GAEAQVADT NLLFAQMAGCTGLISAGYKITWDKG D E E+ EVDIFRDTALRYMGYANEVGEAFRPLIPAFAVV SYGVAIAYVSADAVAKGFKC+KESDSK CALPASFDVLTFQ+LASVVFPGFTINRWVAFVEY++QASDLE+QFPGV GWLPTAAGLGLIPFIVAPLDNLVEEVLDKT+RP L++KFPTCELEPIFGAEPLP
Sbjct: 1 MVVKVSYAAMALAVAAATAGVGEAFVAAPVASTGRP---------APSSSWAS-CRAASRGGARGAGVSMIVGAEAQVADTTNLLFAQMAGCTGLISAGYKITWDKGEDAEEGEDGEKREVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVAKGFKCAKESDSKTCALPASFDVLTFQMLASVVFPGFTINRWVAFVEYLLQASDLESQFPGVGGWLPTAAGLGLIPFIVAPLDNLVEEVLDKTIRPILVDKFPTCELEPIFGAEPLP 274
BLAST of mRNA_C-linearis_contig103.818.1 vs. uniprot
Match: A0A835Z9H3_9STRA (Mitochondrial fission process protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9H3_9STRA) HSP 1 Score: 215 bits (548), Expect = 7.850e-64 Identity = 128/257 (49.81%), Postives = 156/257 (60.70%), Query Frame = 2 Query: 284 VADTANLLFAQMAGCTGLISAGYKITWDKGADGG--GEEGREEGEVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVVSYGVAIAYV-------------------------------SADAVAKGFKCSKESDSKA--------CALPASFDVLTFQLLASVVFPGFTINRWVAFVEYMIQASDLETQFPGV-NGWLPTAAGLGLIPFIVAPLDNLVEEVLDKTL--------RPFLLEKFPTCELEPIFGAEPLP 904
VAD A +L+AQ+AGC L+ AG+K+ D+G + G GE EE EVDIFRDT +RY+GYANE GEAFRPL+P V +SY VAIAYV SADA+AKG+ C+KES + CA PA+ DVL FQ+LASV+FPGFTINRWV FV ++ + +L+ P V +LPTAAGL LIPFIV PLD LVE RP L++ FP C+LEPIFGAEPLP
Sbjct: 8 VADPA-MLYAQLAGCGSLLGAGFKLIGDEGEEDGAEGEGAGEEREVDIFRDTPVRYLGYANECGEAFRPLVPGIVVTLSYAVAIAYVRHGGMGQLFEXXXXXXXXXXXXXXXXXXFAVSADAIAKGYSCAKESSAACKAQGKANMCAFPATLDVLLFQMLASVIFPGFTINRWVTFVGFLESSLNLQDTLPPVVYEYLPTAAGLALIPFIVKPLDVLVEXXXXXXXXXXXXXXXRPLLVQLFPLCDLEPIFGAEPLP 263
BLAST of mRNA_C-linearis_contig103.818.1 vs. uniprot
Match: D8LKC7_ECTSI (Mitochondrial fission process protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC7_ECTSI) HSP 1 Score: 210 bits (535), Expect = 4.260e-63 Identity = 129/170 (75.88%), Postives = 135/170 (79.41%), Query Frame = 2 Query: 80 ALAMAAAVAAGVTEAFVAPPVAGVARAGAWVGAQPSSSSSSWTSACRRAAGGGPRGEGTSMIAGAEAQVADTANLLFAQMAGCTGLISAGYKITWDKGADGGGEEGREEGEVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVVSYGVAIAYVSADAVAKGFKCSKESDS 589
ALA+AAA A GV EAFVA PVA R G P +SSSSW S CR A+ GG RG G SMI GAEAQVADT NLLFAQMAGCTGLISAGYKITWDKG + E EVDIFRDTALRYMGYANEVGEAFRPLIPAFAVV SYGVAIAYVSADAV+KGFKC+KESDS
Sbjct: 2 ALAVAAATA-GVGEAFVAAPVA---RTG------PPASSSSWAS-CRAASRGGGRGAGVSMIVGAEAQVADTTNLLFAQMAGCTGLISAGYKITWDKGEEAEXXXXXXEREVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVASYGVAIAYVSADAVSKGFKCAKESDS 160
BLAST of mRNA_C-linearis_contig103.818.1 vs. uniprot
Match: A0A6U1M3H5_9STRA (Mitochondrial fission process protein 1 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1M3H5_9STRA) HSP 1 Score: 180 bits (457), Expect = 3.670e-50 Identity = 106/219 (48.40%), Postives = 132/219 (60.27%), Query Frame = 2 Query: 284 VADTANLLFAQMAGCTGLISAGYKITWDKGADGGGEEGREEGEVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVVSYGVAIAYVSADAVAKGFKCSKESDS-----------KACALPASFDVLTFQLLASVVFPGFTINRWVAFVEYMIQASDLETQ------FPG---VNGWLPTAAGLGLIPFIVAPLDNLVEEVLDKTLRPFLLEKFPTCELEP 880
V D LL Q+AG + I +GY + +G + EE E GEVDI+RDT LRYMGY NEVGEAFRP+IP V + Y VAI YV ADA++K K K S+ +C++PA DVL+FQLLASV+ PGFTINRWVAF E +I+ + + FP + W TA GL LIP I+ P+D LVE+ LD+TLRP L FP C P
Sbjct: 51 VIDDPKLLIEQVAGLSVFIGSGYVLESREGVEEEEEEVTEGGEVDIYRDTPLRYMGYMNEVGEAFRPVIPVTGVYLGYVVAIVYVFADAISKARKAPKISEPLFKAAGMTKSPSSCSIPALVDVLSFQLLASVIIPGFTINRWVAFCELVIEKMEFAVEGSAAYDFPFNDLIVEWGATAGGLLLIPLIIKPIDFLVEQFLDRTLRPVLDSTFPVCSWTP 269
BLAST of mRNA_C-linearis_contig103.818.1 vs. uniprot
Match: A0A6S9JYQ6_HETAK (Mitochondrial fission process protein 1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JYQ6_HETAK) HSP 1 Score: 158 bits (399), Expect = 9.510e-42 Identity = 90/175 (51.43%), Postives = 114/175 (65.14%), Query Frame = 2 Query: 392 EGRE-EGEVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVVSYGVAIAYVSADAVAKGFKCSKES---------DSKACALPASFDVLTFQLLASVVFPGFTINRWVAFVEYMIQASDLET--QFPG-VNGWLPTAAGLGLIPFIVAPLDNLVEEVLDKTLRPFLLEKFPTCELE 877
EG E E EVDI+RDT LRYMGYANE+GEAFRPL+ V++ Y A+ YV ADA +K +++ + CA+PA +VL+FQLLASV PGFTINRWV F+ +++ D ET Q P V WLPT GL LIP IV PLD LVE+ L+ TL+P+L FP C ++
Sbjct: 88 EGEETEKEVDIYRDTPLRYMGYANELGEAFRPLVDVKFVLLGYVAALGYVFADAASKALAAPQKNCMNFEGTDKNPNICAIPALAEVLSFQLLASVALPGFTINRWVLFLSLLVEKYD-ETFGQLPDLVQEWLPTLGGLALIPLIVKPLDLLVEKFLEATLQPYLENTFPLCTVK 261
BLAST of mRNA_C-linearis_contig103.818.1 vs. uniprot
Match: A0A6S9GWP9_HETAK (Mitochondrial fission process protein 1 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GWP9_HETAK) HSP 1 Score: 155 bits (392), Expect = 1.240e-40 Identity = 95/210 (45.24%), Postives = 122/210 (58.10%), Query Frame = 2 Query: 305 LFAQMAGCTGLISAGYKITWDKGADGGGEEGRE-----EGEVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVVSYGVAIAYVSADAVAK-----GFKCS---KESDSKACALPASFDVLTFQLLASVVFPGFTINRWVAFV-----EYMIQASDLETQFPGVNGWLPTAAGLGLIPFIVAPLDNLVEEVLDKTLRPFLLEKFPTCELEP 880
L AQ+A +++ GY W K E E + D++RD+ LRYMGYANEVGEAFRPL+P V++SY A+ YV AD +K G C + D+ CA+PA +VL+FQLLASV PGFTINRWV F+ EY + L+ P + WLPT GL LIP IV PLD LVE L+ L P+L ++FP C + P
Sbjct: 69 LIAQVAAIGSVVTYGY--VWSKNHHSTEESSPHMQPAAEKDFDVYRDSPLRYMGYANEVGEAFRPLVPVHFVLLSYLAALTYVFADGASKALAAPGRNCQNFGEGEDAGICAVPALTEVLSFQLLASVALPGFTINRWVLFLGLCAEEYDHLVAHLD---PVILEWLPTLGGLALIPLIVRPLDFLVERALELILEPYLHKQFPRCTVTP 273
BLAST of mRNA_C-linearis_contig103.818.1 vs. uniprot
Match: A0A7S1TYP3_9STRA (Mitochondrial fission process protein 1 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TYP3_9STRA) HSP 1 Score: 151 bits (382), Expect = 1.450e-39 Identity = 90/165 (54.55%), Postives = 105/165 (63.64%), Query Frame = 2 Query: 404 EGEVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVVSYGVAIAYVSADAVAKGFK--CSKESDSKACALPASFDVLTFQLLASVVFPGFTINRWVAFVEYMIQ---ASDLETQFPGVNG------------WLPTAAGLGLIPFIVAPLDNLVEEVLDKTLRPFL 847
E +VDI+RDT LRYMGY NEVGEAFRPL+P F V +SY +AI YV ADA++K S D+ A+ A+ DVL+FQLLASV PGFTINR VA V+Y + SD T+ G W PT AGL LIPFIV PLD LVE +LD TLRP L
Sbjct: 73 EDDVDIYRDTPLRYMGYCNEVGEAFRPLVPPFVVPLSYALAIGYVCADALSKSMNQGTSGSDDAPKRAVAAAVDVLSFQLLASVAAPGFTINRTVALVQYGVDNLLGSDAFTKVEAGLGAGAQAAVDTGLSWAPTLAGLLLIPFIVQPLDELVEVLLDLTLRPAL 237
BLAST of mRNA_C-linearis_contig103.818.1 vs. uniprot
Match: A0A7S1Y783_9STRA (Mitochondrial fission process protein 1 n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y783_9STRA) HSP 1 Score: 148 bits (374), Expect = 4.590e-38 Identity = 82/162 (50.62%), Postives = 101/162 (62.35%), Query Frame = 2 Query: 404 EGEVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVVSYGVAIAYVSADAVAKGFKCSK-----ESDSKACALPASFDVLTFQLLASVVFPGFTINRWVAFVEYMIQASDLETQFPGVNGWLPTAAGLGLIPFIVAPLDNLVEEVLDKTLRPFLLEKFPTCEL 874
+GEVD++RDT LRY GYANEVGEAF PL+PA+ V SYGVAI YV AD V K +K ES S CAL D L +QL ASV PG+TI++ VA ++ A+ L++ + G LPTA GL IPFIV PLD L E +D TLR +CE+
Sbjct: 111 DGEVDLYRDTLLRYAGYANEVGEAFAPLVPAWCVPASYGVAITYVCADTVDKTYKALNGQRYSESASLKCALIEGLDALIWQLAASVALPGYTIHQIVAITVTLLSAAGLDSSDSAIIGVLPTAIGLATIPFIVKPLDELAEVGMDVTLRKLWAPYLESCEI 272
BLAST of mRNA_C-linearis_contig103.818.1 vs. uniprot
Match: A0A0G4FUR6_9ALVE (Mitochondrial fission process protein 1 n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FUR6_9ALVE) HSP 1 Score: 143 bits (361), Expect = 4.280e-36 Identity = 85/180 (47.22%), Postives = 106/180 (58.89%), Query Frame = 2 Query: 335 LISAGYKITWDKGADGGG-----EEGREEGEVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVVSYGVAIAYVSADAVAKGFKCSKESDSKACALP--ASFDVLTFQLLASVVFPGFTINRWVAFVEYMIQASDLETQFPGVN----GWLPTAAGLGLIPFIVAPLDNLVEEVLDKTLRP 841
LI+AG + GG EE EE DIFRDT +RY+GYANEVGEAFRPL+P V +SY VA AY+ AD+ AKG +C++ + P A D L FQ+LASVVFP F INR VA V ++ + G+ ++PT GL +IPFI PLD VEE+LD T RP
Sbjct: 89 LIAAGKALELGVFKSGGADPEVLEEEVEEETADIFRDTPVRYLGYANEVGEAFRPLVPVELVNLSYAVAFAYIFADSAAKGKQCAENPERSRSPTPPVAVIDCLIFQILASVVFPSFNINRIVALVGTQLEQIEAIANSVGIPTETADYVPTLVGLAIIPFIAPPLDTFVEEILDLTYRP 268
BLAST of mRNA_C-linearis_contig103.818.1 vs. uniprot
Match: A0A7S2GNS6_9STRA (Mitochondrial fission process protein 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GNS6_9STRA) HSP 1 Score: 139 bits (349), Expect = 2.920e-34 Identity = 87/196 (44.39%), Postives = 112/196 (57.14%), Query Frame = 2 Query: 332 GLISAGYKITWDKGADGGGEEGRE--EGEVDIFRDTALRYMGYANEVGEAFRPLIPAFAVVVSYGVAIAYVSADAVAKGFKCSK-----ESDSKACALPASFDVLTFQLLASVVFPGFTINRWVAFVEYMIQASDLETQFPGVNGWLPTAAGLGLIPFIVAPLDNLVEEVLDKTLRPFLLEKFPTCELE-PIFGAE 895
GL+SAGY + + + GE +GEVD++RDT +RY GYANEVGEAF PL+PA+ V SY VAIAYV AD V KG K K ES C + S D +Q+ ASV PG+TI++ VA ++ +++ V LPTA GL IPFIV PLD E+ +D TLR +CE+ P F E
Sbjct: 97 GLVSAGYALLSGESGEAEGENSAAAADGEVDLYRDTPVRYCGYANEVGEAFAPLVPAWIVPASYAVAIAYVCADTVDKGVKAFKGGRYMESSIGVCTVIESLDAFIWQIAASVALPGYTIHQIVAAT--VLVSNNYGWDADPVLKVLPTAIGLATIPFIVKPLDEFAEKGMDWTLRKLWSPFLESCEVSYPDFDDE 290 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.818.1 >prot_C-linearis_contig103.818.1 ID=prot_C-linearis_contig103.818.1|Name=mRNA_C-linearis_contig103.818.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=284bp MAAKVSCAALAMAAAVAAGVTEAFVAPPVAGVARAGAWVGAQPSSSSSSWback to top mRNA from alignment at C-linearis_contig103:81185..91255+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.818.1 ID=mRNA_C-linearis_contig103.818.1|Name=mRNA_C-linearis_contig103.818.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=10071bp|location=Sequence derived from alignment at C-linearis_contig103:81185..91255+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:81185..91255+ >mRNA_C-linearis_contig103.818.1 ID=mRNA_C-linearis_contig103.818.1|Name=mRNA_C-linearis_contig103.818.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1704bp|location=Sequence derived from alignment at C-linearis_contig103:81185..91255+ (Chordaria linearis ClinC8C monoicous)back to top |