mRNA_C-linearis_contig103.817.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI) HSP 1 Score: 105 bits (263), Expect = 3.860e-26 Identity = 51/92 (55.43%), Postives = 67/92 (72.83%), Query Frame = 1 Query: 4 RVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQDSTLQFAVRESVGDQFGLLTASILKNKEAGKVPFASIKEFMDE 279
RVVS++SP ++ +LQ FTVP GT Y +YL+ L GLV + + LG VTPQD+T+Q AVRESV DQ+ +LTAS+ K K+ G VPF +I M E
Sbjct: 20 RVVSSSSPEKLVYDLQTFTVPTGTPYSEYLTTLHGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKQLGLVPFDNIDTLMQE 111
BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE) HSP 1 Score: 104 bits (259), Expect = 4.080e-24 Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 1 Query: 4 RVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQDSTLQFAVRESVGDQFGLLTASILKNKEAGKVPFASIKEFMDE 279
RVVS++SP ++ +LQ F P GT Y +YL+ LQGLV + + LG VTPQD+T+Q AVRESV DQ+ +LTAS+ K KE G VPF +I M E
Sbjct: 278 RVVSSSSPEKLVYDLQTFAAPTGTPYSEYLTILQGLVQNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASVFKGKEKGVVPFDNIDTLMHE 369
BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 9.970e-22 Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 Query: 4 RVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQDSTLQFAVRESVGDQFGLLTASILKNKEAGKVPFASIKEFMDE 279
RVVS++SP ++ +LQ VP GT Y +YL+ LQGLV + + LG VTPQD+T+Q AVRESV DQ+ +LTAS+ K KE V F +I M E
Sbjct: 74 RVVSSSSPEKLVYDLQTCAVPTGTPYSEYLTTLQGLVHNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASMFKGKELCVVAFDNIDTLMHE 165
BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 6.140e-21 Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 1 Query: 4 RVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQDSTLQFAVRESVGDQFGLLTASILKNKEAGK 243
RVVS++SP ++ +LQ F VP GT Y +YL+ LQGLV + + L VTPQD+T+Q AVRESV DQ+ +LTAS+ K KE G+
Sbjct: 472 RVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELGR 551
BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 1.580e-20 Identity = 45/83 (54.22%), Postives = 59/83 (71.08%), Query Frame = 1 Query: 4 RVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQDSTLQFAVRESVGDQFGLLTASILKNKEAGKVPF 252
RVV+++SP V+ +LQ F VP GT Y +YL+ LQGL + + L VTPQD+T+Q AVRE V DQ+ +LTAS+ K KE G V F
Sbjct: 43 RVVNSSSPEKVVYDLQTFAVPTGTPYREYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELGVVQF 125
BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Match: A0A6H5JYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ6_9PHAE) HSP 1 Score: 75.5 bits (184), Expect = 8.660e-16 Identity = 36/64 (56.25%), Postives = 48/64 (75.00%), Query Frame = 1 Query: 4 RVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQDSTLQFAVRESVGDQ 195
+VVS++SP ++ +LQ F VP GT +YL+ LQGLV + + LG VTPQD+T+Q AVRESV DQ
Sbjct: 20 KVVSSSSPEKLVYDLQRFAVPTGTPNSEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQ 83 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig103.817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig103.817.1 >prot_C-linearis_contig103.817.1 ID=prot_C-linearis_contig103.817.1|Name=mRNA_C-linearis_contig103.817.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=93bp TRVVSNTSPNSVILELQNFTVPEGTKYEDYLSKLQGLVGSAQTLGHVTPQback to top mRNA from alignment at C-linearis_contig103:73205..73483+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig103.817.1 ID=mRNA_C-linearis_contig103.817.1|Name=mRNA_C-linearis_contig103.817.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at C-linearis_contig103:73205..73483+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig103:73205..73483+ >mRNA_C-linearis_contig103.817.1 ID=mRNA_C-linearis_contig103.817.1|Name=mRNA_C-linearis_contig103.817.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at C-linearis_contig103:73205..73483+ (Chordaria linearis ClinC8C monoicous)back to top |