mRNA_C-linearis_contig102.807.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 204 bits (520), Expect = 6.310e-61 Identity = 100/122 (81.97%), Postives = 110/122 (90.16%), Query Frame = 1 Query: 1 VSSLNKKATVPHRREVLSRVRAVKRGLESEVALMLDDEFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366 VS+LNK+A VP RRE+LSR+RAVK LESEVALMLD EFVAITTDGWTSR+NESY SLTVAYID EW LHH+ L+CAKHTGTTTGEDLA +AGM+ERHDLTGRV ACVTDCEPSM+KAGRL Sbjct: 2 VSALNKRAKVPSRRELLSRMRAVKTALESEVALMLDAEFVAITTDGWTSRNNESYMSLTVAYIDYEWKLHHLSLDCAKHTGTTTGEDLAALVAGMVERHDLTGRVIACVTDCEPSMIKAGRL 123
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 190 bits (483), Expect = 1.230e-55 Identity = 93/122 (76.23%), Postives = 102/122 (83.61%), Query Frame = 1 Query: 1 VSSLNKKATVPHRREVLSRVRAVKRGLESEVALMLDDEFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366 VS LNKKA P RR ++ ++R +K+ LESEVALMLDDE+VAITTDGWTSRSNESY SLTVAYID W LHH+ L C KHTG+T GEDLA EI MIERH LTGRVTACVTDCEPSMVKAGRL Sbjct: 38 VSGLNKKARAPIRRALVEKMREIKKNLESEVALMLDDEYVAITTDGWTSRSNESYMSLTVAYIDVGWQLHHLSLNCTKHTGSTHGEDLAREITSMIERHGLTGRVTACVTDCEPSMVKAGRL 159
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 128 bits (321), Expect = 1.740e-32 Identity = 64/122 (52.46%), Postives = 81/122 (66.39%), Query Frame = 1 Query: 1 VSSLNKKATVPHRREVLSRVRAVKRGLESEVALMLDDEFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366 V L +ATVPH+R L ++R +K+GL+ EV L E VA+T+DGWTS SN++Y T YI S ++L + +EC KH G TTGEDL + MI R+ LT R A TDCEPSMVKAGRL Sbjct: 11 VRFLKSRATVPHKRLFLEKLRGMKKGLDQEVLGRLTGEHVAVTSDGWTSASNDTYMYFTCTYISSNFDLVALCVECKKHGGRTTGEDLVEAVKAMIARNGLTSRTVATTTDCEPSMVKAGRL 132
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 114 bits (285), Expect = 4.650e-27 Identity = 55/122 (45.08%), Postives = 82/122 (67.21%), Query Frame = 1 Query: 1 VSSLNKKATVPHRREVLSRVRAVKRGLESEVALMLDDEFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366 V ++ A VP +++ ++ +R VK+ + +V+ +++ E V IT+DGWTS +N++Y SLT I S W L + ++C+K GTTTG+ LA I + +H LTG+VTA TDCEPSMVK GRL Sbjct: 2 VHAIRPSARVPEKKDCVTTMRTVKKCMMEKVSRLIEGEQVCITSDGWTSCANDTYMSLTFTLITSAWKLVTLSVDCSKSEGTTTGDALAAGIKATVAKHGLTGKVTAVTTDCEPSMVKMGRL 123
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 1.910e-20 Identity = 47/85 (55.29%), Postives = 56/85 (65.88%), Query Frame = 1 Query: 112 EFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366 E VA+T+DGWT SN++Y S T YI S ++L + LEC KH T GEDL + MI R+ LTGR A TDCE SMVKAGRL Sbjct: 4 EHVALTSDGWTPASNDTYMSFTCTYISSNFDLVALCLECKKHGWRTAGEDLVEAVKAMIARNGLTGRTVAITTDCELSMVKAGRL 88
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 3.360e-15 Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 1 Query: 145 SRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366 S SN++Y + T YI S ++L + LE KH G TTGEDL + MI R+ LTGR A TDCEP MVKAGRL Sbjct: 3 SASNDTYMTFTCTYISSNFDLVALCLEYKKHGGRTTGEDLVEAVKAMIARNGLTGRTVATTTDCEPFMVKAGRL 76
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6J1Q6G9_9HYME (zinc finger BED domain-containing protein 1-like n=1 Tax=Temnothorax curvispinosus TaxID=300111 RepID=A0A6J1Q6G9_9HYME) HSP 1 Score: 73.6 bits (179), Expect = 8.820e-13 Identity = 41/113 (36.28%), Postives = 64/113 (56.64%), Query Frame = 1 Query: 28 VPHRREVLSRVRAVKRGLESEVALMLDD-EFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGR 363 VP RR + +R+R + +V LD + VAITTD WTS++N+SY +L+ Y+D W H + L + T + T E L I +++ +LT +VT V D ++VKA + Sbjct: 101 VPSRRTIDNRMRTLYNEAAEQVRTTLDKVDAVAITTDAWTSKANDSYITLSAHYLDDNWIPHTVNLMTREMTESHTAEHLQKTIREVVQEWNLTNKVTGLVHDNASNIVKAAK 213
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: A0A6G0XUK0_APHCR (Zinc finger BED domain-containing protein 6-like (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0XUK0_APHCR) HSP 1 Score: 68.6 bits (166), Expect = 4.670e-11 Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 1 Query: 112 EFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTD 333 E +TTD WTSR+NES+ ++T+ +ID+E+ L I LEC+ TG +LA EI ++E +LT ++T V+D Sbjct: 204 ESACLTTDCWTSRNNESFMAITIHFIDTEFELKSILLECSSFNLNHTGHNLAQEIERILESWELTKKITFAVSD 277
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: UPI00100E6752 (zinc finger BED domain-containing protein 4-like n=1 Tax=Aphis gossypii TaxID=80765 RepID=UPI00100E6752) HSP 1 Score: 66.6 bits (161), Expect = 1.910e-10 Identity = 31/85 (36.47%), Postives = 52/85 (61.18%), Query Frame = 1 Query: 112 EFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTDCEPSMVKAGRL 366 +++A+TTD WTS NESY+++TV +ID +L L CAK + T +++ +++ +I + L +V AC TD ++ A RL Sbjct: 61 QYIALTTDAWTSIRNESYTAITVHFIDQNCHLKSYLLSCAKFSVRHTSQNIKDDLQNVIRQWGLQNKVAACTTDNAANITAAIRL 145
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Match: UPI001FBAC49D (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Pieris napi TaxID=78633 RepID=UPI001FBAC49D) HSP 1 Score: 65.9 bits (159), Expect = 4.460e-10 Identity = 37/113 (32.74%), Postives = 63/113 (55.75%), Query Frame = 1 Query: 1 VSSLNKKATVPHRREVLSRVRAVKRGLESE-VALMLDD-EFVAITTDGWTSRSNESYSSLTVAYIDSEWNLHHIYLECAKHTGTTTGEDLANEIAGMIERHDLTGRVTACVTD 333 + LN T+P R+ + + + +E + V L+ +F+++TTDGWTS+ NE Y SLT +++ + L LEC +++ E+L NEI M E ++T ++ A TD Sbjct: 178 IHGLNPNYTIPCRKTLSNALLVNYYNIEKQKVQKCLEGTDFISLTTDGWTSKPNEHYISLTAHFLNDKTELESKVLECYQYSDRQFAENLKNEIMRMCEDWNITNKIVAVTTD 290 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.807.1 >prot_C-linearis_contig102.807.1 ID=prot_C-linearis_contig102.807.1|Name=mRNA_C-linearis_contig102.807.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=122bp VSSLNKKATVPHRREVLSRVRAVKRGLESEVALMLDDEFVAITTDGWTSRback to top mRNA from alignment at C-linearis_contig102:545618..545985+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.807.1 ID=mRNA_C-linearis_contig102.807.1|Name=mRNA_C-linearis_contig102.807.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=368bp|location=Sequence derived from alignment at C-linearis_contig102:545618..545985+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:545618..545985+ >mRNA_C-linearis_contig102.807.1 ID=mRNA_C-linearis_contig102.807.1|Name=mRNA_C-linearis_contig102.807.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at C-linearis_contig102:545618..545985+ (Chordaria linearis ClinC8C monoicous)back to top |