mRNA_C-linearis_contig102.801.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.801.1 vs. uniprot
Match: A0A6H5JMR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMR6_9PHAE) HSP 1 Score: 288 bits (738), Expect = 3.340e-93 Identity = 143/171 (83.63%), Postives = 157/171 (91.81%), Query Frame = 1 Query: 58 MQALASCAFARSGVTREESLALDKVSPTLYARLGRDTIEQISSGFYDRVFDDEEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTQRKGKHHRLIHRHSPYDLNPKSAARWLEHMEATLDSSEGVDLPAKELLMAYFSHTAYFLVAGKEMSNPSALVDYANKMAESCPK 570
MQAL +CAFA SGVTREES+ALDKV P+L+ RLG+DTIE IS+ FYDRVFDDEEWFRSIFSASTKREAVQNQADFLVERLGGPKLYT+RKGKH+RLIHRHSPYDLNPKSAARWLEHMEA +D+S GVD +K LLMA+FSH A+FLVAGK+MSNPS LVDY NKMAESCPK
Sbjct: 1 MQALTACAFAGSGVTREESVALDKVKPSLFERLGQDTIEGISALFYDRVFDDEEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTKRKGKHYRLIHRHSPYDLNPKSAARWLEHMEAAIDASGGVDAESKRLLMAFFSHMAFFLVAGKDMSNPSNLVDYHNKMAESCPK 171
BLAST of mRNA_C-linearis_contig102.801.1 vs. uniprot
Match: A0A0U9HKG8_KLENI (Hemoglobin-like protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HKG8_KLENI) HSP 1 Score: 155 bits (392), Expect = 1.100e-41 Identity = 82/165 (49.70%), Postives = 110/165 (66.67%), Query Frame = 1 Query: 58 MQALASCAFARSGVTREESLALDKVSPTLYARLGRDTIEQISSGFYDRVFDDEE-WFRSIFSASTKREAVQNQADFLVERLGGPKLYTQRKGKHHRLIHRHSPYDLNPKSAARWLEHMEATLDSSEGVDLPAKELLMAYFSHTAYFLVAGKEMSNPSALVDYANK 549
MQ+L A +SGV +E+ +D V+ LY RLG +S+ FY RV+DD+E WFR IF+ ST+ A QNQ +F ++RLGGP LY+QRKG H LI RH PY + ++A RWLEHM+ LD + G+D +++ L +F HTAYFLVAGKE+ N + LV Y K
Sbjct: 1 MQSLQEQASQKSGVPLDEAFQVDAVN--LYERLGHQVFIDLSTNFYTRVYDDKETWFRDIFANSTREHATQNQYEFFIQRLGGPPLYSQRKG-HPALIGRHGPYAVTERAAQRWLEHMDEALDETAGIDEDSRQRLRNFFRHTAYFLVAGKELVNRNRLVGYGGK 162
BLAST of mRNA_C-linearis_contig102.801.1 vs. uniprot
Match: D8T7E2_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T7E2_SELML) HSP 1 Score: 152 bits (385), Expect = 8.210e-41 Identity = 76/153 (49.67%), Postives = 113/153 (73.86%), Query Frame = 1 Query: 58 MQALASCAFARSGVTREESLALDKVSPTLYARLGRDTIEQISSGFYDRVF-DDEEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTQRKGKHHRLIHRHSPYDLNPKSAARWLEHMEATLDSSEGVDLPAKELLMAYFSHTAYFLVAGKEM 513
MQ+L A SGV+++++ +D+++ LY +LG +T ++S+ FY+RV+ DDEEWFRSIF+ S+K A+QNQ +F ++R+GGP LY++RKG H LI RH PY + ++A RW+EHM A LDS E +D +K+ ++ +F HTA+FLVAGKEM
Sbjct: 1 MQSLQDRASELSGVSQDDAFEIDEIN--LYKKLGHETFVKLSTNFYNRVYADDEEWFRSIFANSSKDAAIQNQYEFFIQRMGGPPLYSRRKG-HPALIGRHGPYPVTERAAERWIEHMTAALDSVEEIDADSKKRMLKFFRHTAFFLVAGKEM 150
BLAST of mRNA_C-linearis_contig102.801.1 vs. uniprot
Match: A9TSV7_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TSV7_PHYPA) HSP 1 Score: 152 bits (384), Expect = 1.760e-40 Identity = 80/160 (50.00%), Postives = 110/160 (68.75%), Query Frame = 1 Query: 58 MQALASCAFARSGVTREESLALDKVSPTLYARLGRDTIEQISSGFYDRVF-DDEEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTQRKGKHHRLIHRHSPYDLNPKSAARWLEHMEATLDSSEGVDLPAKELLMAYFSHTAYFLVAGKEMSNPSALV 534
MQAL A SGV E++ A+D V+ LY +LG DT ++S+ FY+ V+ DD++WFRSIF+ STK +A+QNQ +F ++R+GGP LY RKG LI RH PY + ++AARWL HM+ LD S +DL +K + +F HTA+FLVAGKE++N LV
Sbjct: 1 MQALNRQASCMSGVAHEDATAIDNVN--LYEKLGFDTFVKLSTNFYNEVYNDDQQWFRSIFANSTKDDAIQNQYEFFIQRMGGPPLYAHRKGST-ALIARHGPYPITERAAARWLFHMKTALDKSPEIDLDSKTRMFNFFKHTAFFLVAGKELTNHHRLV 157
BLAST of mRNA_C-linearis_contig102.801.1 vs. uniprot
Match: A9S385_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9S385_PHYPA) HSP 1 Score: 150 bits (380), Expect = 4.400e-40 Identity = 74/145 (51.03%), Postives = 107/145 (73.79%), Query Frame = 1 Query: 88 RSGVTREESLALDKVSPTLYARLGRDTIEQISSGFYDRVFDDE-EWFRSIFSASTKREAVQNQADFLVERLGGPKLYTQRKGKHHRLIHRHSPYDLNPKSAARWLEHMEATLDSSEGVDLPAKELLMAYFSHTAYFLVAGKEMSN 519
RSGV ++++ +D+V+ L+ RLG DT ++S+ FY RV+DD+ EWFR IFS+STK +A++NQ +F V+R+GGP LY+QRKG H LI RH P+ + + A RWLEHM+A L+ + +D +K+ + +F HTAYFLVAGKE+ N
Sbjct: 10 RSGVKQDDAFKIDEVN--LFQRLGLDTFIKLSTNFYARVYDDDQEWFRKIFSSSTKEDAIRNQYEFFVQRMGGPPLYSQRKG-HPALIGRHGPFTFDEQGAVRWLEHMQAALNDTPEIDADSKKRMFDFFKHTAYFLVAGKELMN 151
BLAST of mRNA_C-linearis_contig102.801.1 vs. uniprot
Match: UPI001FB16E89 (two-on-two hemoglobin-3 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB16E89) HSP 1 Score: 150 bits (379), Expect = 9.720e-40 Identity = 79/169 (46.75%), Postives = 117/169 (69.23%), Query Frame = 1 Query: 58 MQALASCAFARSGVTREESLALDKVSPTLYARLGRDTIEQISSGFYDRVFDDE-EWFRSIFSASTKREAVQNQADFLVERLGGPKLYTQRKGKHHRLIHRHSPYDLNPKSAARWLEHMEATLDSSEGVDLPAKELLMAYFSHTAYFLVAGKEMSNPSALVDYANKMAES 561
MQ+L A SGV + ++ A+D+++ L+ +LG+ T +S+ FY+RV+DDE EWFRSIF+ S+K +A+QNQ +F ++R+GGP LY++RKG H LI RH P+ + ++A RWL+HM+ LDS+ +D +K +M +F HTA+FLVAG EM NP+ V K A S
Sbjct: 1 MQSLQQKASEWSGVDQTDAFAIDEIN--LFEKLGKQTFINLSTHFYNRVYDDEQEWFRSIFANSSKEDAIQNQYEFFIQRMGGPPLYSERKG-HPALIGRHRPFPVTHEAAERWLQHMQQALDSTADIDSDSKTKMMNFFRHTAFFLVAGNEMKNPNQGVPPPCKHATS 166
BLAST of mRNA_C-linearis_contig102.801.1 vs. uniprot
Match: A0A7S1GAZ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAZ3_9STRA) HSP 1 Score: 150 bits (378), Expect = 7.430e-39 Identity = 77/157 (49.04%), Postives = 112/157 (71.34%), Query Frame = 1 Query: 46 ACRAMQALASCAFARSGVTREESLALDKVSPTLYARLGRDTIEQISSGFYDRVFDD-EEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTQRKGKHHRLIHRHSPYDLNPKSAARWLEHMEATLDSSEGVDLPAKELLMAYFSHTAYFLVAGKEM 513
A AMQAL A +GVT EE+ ALD+V+ ++ RLG+D ++S+ FY+RV+DD E WFR IF+ S K +A+QNQ +F ++R+GGP LY+ RKG H LI RH +D++P +A RWL HMEA LD++ +D +++ + A+ HTA+FLVAG++M
Sbjct: 58 ATAAMQALQEAASRNAGVTSEEAFALDEVN--IFERLGKDVFVKLSTEFYNRVYDDGEAWFRDIFAGSKKEDAIQNQYEFFIQRMGGPPLYSTRKG-HPALIGRHRTFDVSPAAARRWLTHMEAALDATPEIDGDSRKRMWAFLRHTAWFLVAGQDM 211
BLAST of mRNA_C-linearis_contig102.801.1 vs. uniprot
Match: A0A068VD10_COFCA (Uncharacterized protein n=5 Tax=Coffea TaxID=13442 RepID=A0A068VD10_COFCA) HSP 1 Score: 146 bits (369), Expect = 2.760e-38 Identity = 76/155 (49.03%), Postives = 107/155 (69.03%), Query Frame = 1 Query: 58 MQALASCAFARSGVTREESLALDKVSPTLYARLGRDTIEQISSGFYDRVF-DDEEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTQRKGKHHRLIHRHSPYDLNPKSAARWLEHMEATLDSSEGVDLPAKELLMAYFSHTAYFLVAGKEMSN 519
MQ+L A SGV E++ A+D + LY +LG T +S+ FY+RV+ D+EEWFRSIFS S K +A+QNQ +F V+R+GGP LY+QRKG H LI RH P+ + ++A RWL HM+ LD++ +DL +K ++ +F HTA+FLVAG E+ N
Sbjct: 1 MQSLQEKAAEWSGVDAEDAFAIDGTN--LYEKLGLQTFINLSTNFYERVYADEEEWFRSIFSKSKKEDAIQNQYEFFVQRMGGPPLYSQRKG-HPALIGRHRPFPVTHRAAERWLNHMQQALDATSDIDLDSKTKMLNFFRHTAFFLVAGDELKN 152
BLAST of mRNA_C-linearis_contig102.801.1 vs. uniprot
Match: A0A1S3BCI0_CUCME (two-on-two hemoglobin-3 isoform X2 n=7 Tax=Cucurbitaceae TaxID=3650 RepID=A0A1S3BCI0_CUCME) HSP 1 Score: 146 bits (368), Expect = 3.630e-38 Identity = 77/155 (49.68%), Postives = 107/155 (69.03%), Query Frame = 1 Query: 58 MQALASCAFARSGVTREESLALDKVSPTLYARLGRDTIEQISSGFYDRVFDD-EEWFRSIFSASTKREAVQNQADFLVERLGGPKLYTQRKGKHHRLIHRHSPYDLNPKSAARWLEHMEATLDSSEGVDLPAKELLMAYFSHTAYFLVAGKEMSN 519
MQ+L A SGV RE++ A+D+V+ L+ +LG T +S+ FY+RV+DD EEWFRSIF S K +A+QNQ +F V+R+GGP LY+QRKG H LI RH P+ + ++A RWL HM+ LD + +D +K ++ +F HTA+FLVAG EM N
Sbjct: 1 MQSLQDKASEWSGVKREDAFAIDEVN--LFQKLGLQTFVTLSTKFYNRVYDDDEEWFRSIFGNSKKEDAIQNQYEFFVQRMGGPPLYSQRKG-HPALIGRHRPFPVTHRAAERWLHHMQLALDETPDIDADSKVRMINFFRHTAFFLVAGDEMKN 152
BLAST of mRNA_C-linearis_contig102.801.1 vs. uniprot
Match: H6U807_WOLAU (Truncated hemoglobin n=1 Tax=Wolffia australiana TaxID=161112 RepID=H6U807_WOLAU) HSP 1 Score: 145 bits (366), Expect = 4.640e-38 Identity = 76/157 (48.41%), Postives = 107/157 (68.15%), Query Frame = 1 Query: 58 MQALASCAFARSGVTREESLALDKVSPTLYARLGRDTIEQISSGFYDRVFDDEE-WFRSIFSASTKREAVQNQADFLVERLGGPKLYTQRKGKHHRLIHRHSPYDLNPKSAARWLEHMEATLDSSEGVDLPAKELLMAYFSHTAYFLVAGKEMSNPS 525
MQ+L A SGV ++ ++D+ + L+ RLG T +S+ FYDRVF DE+ WFRSIF S K +A+QNQ +F V+R+GGP LY+QRKG H LI RH PY + ++A RWL HME LD++ G+D ++ +M +F HTA+FLVAG ++ NP+
Sbjct: 1 MQSLQQKAAEWSGVASADAFSIDETN--LFHRLGLQTFVDLSTAFYDRVFADEQLWFRSIFGESKKEDAIQNQYEFFVQRMGGPPLYSQRKG-HPALIGRHRPYPVTHQAAERWLHHMEQALDATPGIDPDSRIKMMNFFRHTAFFLVAGDKLKNPA 154 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.801.1 >prot_C-linearis_contig102.801.1 ID=prot_C-linearis_contig102.801.1|Name=mRNA_C-linearis_contig102.801.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=173bp MQALASCAFARSGVTREESLALDKVSPTLYARLGRDTIEQISSGFYDRVFback to top mRNA from alignment at C-linearis_contig102:506806..511126- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.801.1 ID=mRNA_C-linearis_contig102.801.1|Name=mRNA_C-linearis_contig102.801.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4321bp|location=Sequence derived from alignment at C-linearis_contig102:506806..511126- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:506806..511126- >mRNA_C-linearis_contig102.801.1 ID=mRNA_C-linearis_contig102.801.1|Name=mRNA_C-linearis_contig102.801.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1038bp|location=Sequence derived from alignment at C-linearis_contig102:506806..511126- (Chordaria linearis ClinC8C monoicous)back to top |