mRNA_C-linearis_contig102.799.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.799.1 vs. uniprot
Match: D7FYL7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYL7_ECTSI) HSP 1 Score: 236 bits (601), Expect = 4.890e-70 Identity = 161/321 (50.16%), Postives = 196/321 (61.06%), Query Frame = 3 Query: 60 KSGPRPTTLDAALLHNEALQEKVQSLE--------------GRLKTAIRDLNGAKKNAKFDKIALEGRTKTALVLEHTVATLRHDLQTNVERRQKVQEKMATIERSWQNERSLRLQDLHRHDAMSSDTKHAEKVAEATEGKWLAAEKTVLQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSEVFELKRILLTRDGEISEERASTSNLRRELSRVRRDFILSTSNRSEQQSALIGSRRRGKRAANAWTPRSRRNSG-----------LSRLEQS-ALQGARDMVSWDDVFMAKIK-----AENGRHSTGLIQSS 929
+ G T L AL NEAL+++VQ+ + G L A R+L AKK+AKFD +A EGRTK +LEHTVATLRHDL TNVERRQKV+EK+AT+ERSWQNERSLRLQDLHRHDAMSSDTKHAEKVAE EG+WL +EK L R E+F+LK++LL R+GEIS ++ ++LRRELSRVRR+FI+STSNRSEQQSAL+GSRRRG + P R+S L R E S ALQ AR VSWD+VFM K + R+S+GL +S+
Sbjct: 18 EDGDVATDLHVAL-QNEALEDQVQAFQEALEVKEERLRTIAGELTAARRELERAKKSAKFDLVAAEGRTKKLGILEHTVATLRHDLHTNVERRQKVEEKVATLERSWQNERSLRLQDLHRHDAMSSDTKHAEKVAEDVEGRWLESEKRAQVLEVKVEQKIHELESQSRVNAAQAGEIEAQAAEIELHRKEIFDLKQVLLAREGEISTGCSTATDLRRELSRVRREFIMSTSNRSEQQSALLGSRRRGISSQRRRHPD--RDSSTKELIAGGGHDLCRKENSRALQKAR--VSWDNVFMTKADQSAETVSDHRNSSGLNKSN 333
BLAST of mRNA_C-linearis_contig102.799.1 vs. uniprot
Match: A0A6H5JZF3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF3_9PHAE) HSP 1 Score: 171 bits (433), Expect = 1.670e-45 Identity = 150/385 (38.96%), Postives = 199/385 (51.69%), Query Frame = 3 Query: 108 EALQEKVQSLEGRLKTAIRDLNGAKKNAKFDKIALEGRTKTALVLEHTVATLRHDLQTNVERRQKVQEKMATIERSWQNERSLRLQDLHRHDAMSSDTKHAEKVAEATEGKWLAAEKTVLQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSEVFELKRILLTRDGEISEERASTSNLRRELSRVRRDFILSTSNRSEQQSALIGSRRRGKRAANAWTPRSRRNSG-----------LSRLEQS-ALQGARDMVSWDDVFMAKIK-----AENGRHSTGLIQSSG------------------GKQARRQAQDGGV-GTGWKEESFALMSRRGEMPTLDPGSTLLVEGSLFVGNGLGVKKTPTVVAGGSAKNMCRKIV 1154
E +E+++++ G L ++L AKK+AKFD +A EGRTK +LEHTVATL HDLQTNVERR EK A + ++ L+ R +A A+A E + AAE R E+ +LK+ +GEIS R++ ++LRRELSRVRR+FI+STSNRSEQQSAL+GSRR+G + P R+S L R E S ALQ AR VSWD+VFM K + R ++GL +S+ G+ + D + GTG KE++ SRRG P + PGSTLLV GSLF+GNGLGVKK PT +GGSAK+M + I+
Sbjct: 47 EVKEERLRTITGMLTATRKELERAKKSAKFDLVAAEGRTKKLGILEHTVATLHHDLQTNVERRWLESEKRAQVLEEKVEQKIHELESQSRVNA-----------AQAGEIEAQAAE-------------------------------------IEFHRKEILDLKQ-----EGEISTGRSTATDLRRELSRVRREFIMSTSNRSEQQSALLGSRRKGISSQRRRHPD--RDSSTKELVAGGGHDLCRKENSRALQKAR--VSWDNVFMTKEDQSAETVSDHRSNSGLNKSNAREIEKPIFRHVSHSSPPVGRDNTTSSADANLDGTGRKEQALQ-QSRRGHKP-IPPGSTLLVAGSLFIGNGLGVKKAPTAFSGGSAKDMLKNIM 372
BLAST of mRNA_C-linearis_contig102.799.1 vs. uniprot
Match: A0A835YZX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZX7_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 5.770e-6 Identity = 41/132 (31.06%), Postives = 69/132 (52.27%), Query Frame = 3 Query: 69 PRPTTLDAALLHNEA----LQEKVQSLEGRLKTAIRDLNGAKKNAKFDKIALEGRTKTALVLEHTVATLRHDLQTNVERRQKVQEKMATIERSWQNERSLRLQDLHRHDAMSSDTKHAEKVAEATEGKWLAA 452
P L A L+ + A L+ ++Q EG +K A NAK+D++A E + ++ EH V + +++ R +Q + ++R+WQ+ER+ RLQDLHRH A+S++ + A E + AA
Sbjct: 26 PDVGALQAELVDSRARQAELEYRLQLSEGLVKEWQARAERALNNAKYDQMAREAHARKLILAEHEVGGAKAEIEELRTRITALQSEARALQRAWQDERAQRLQDLHRHAALSAEAERLRGAARDAEARAAAA 157 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.799.1 >prot_C-linearis_contig102.799.1 ID=prot_C-linearis_contig102.799.1|Name=mRNA_C-linearis_contig102.799.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=375bp MADKRGKSGPRPTTLDAALLHNEALQEKVQSLEGRLKTAIRDLNGAKKNAback to top mRNA from alignment at C-linearis_contig102:498762..502092- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.799.1 ID=mRNA_C-linearis_contig102.799.1|Name=mRNA_C-linearis_contig102.799.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3331bp|location=Sequence derived from alignment at C-linearis_contig102:498762..502092- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:498762..502092- >mRNA_C-linearis_contig102.799.1 ID=mRNA_C-linearis_contig102.799.1|Name=mRNA_C-linearis_contig102.799.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2250bp|location=Sequence derived from alignment at C-linearis_contig102:498762..502092- (Chordaria linearis ClinC8C monoicous)back to top |