mRNA_C-linearis_contig102.793.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig102.793.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 414 bits (1063), Expect = 2.720e-138 Identity = 208/258 (80.62%), Postives = 224/258 (86.82%), Query Frame = 1 Query: 1 MVRSGFVALACAALAASANALKVVTPSADLDVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGEWVTALCPYGESGCPDNEGDYDIVMPEPMMGVSDSGYKVRVMDVSDEGEMDCSDAFTLVASAEAPFDAED--YSLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSKVDRFDIDLYTTDGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPADTPSGEYSIRVGRFEDKTMFGCSGTFMVEGDDDDMSMSYRF 768 M R+GFVALACA L A ANAL+VVTPSADL VVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCG+WVTALCPYGE GCPDNEGDYDIVMPEPM G S+SGYKVRVMDVSDE MDCSDAF L+AS +AP + Y LTVTSPA GD A+AGEEYTVEFDY+NGVGSKVDRF IDLY DG GDCGTYVTSICDK SIGCKDSMGDYDVEIPADT +G+Y IRVGRFED+ ++GCSGTF + G DD+ SMSY F Sbjct: 1 MARTGFVALACAMLGA-ANALEVVTPSADLIVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGDDE-SMSYDF 256
BLAST of mRNA_C-linearis_contig102.793.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 366 bits (939), Expect = 1.810e-119 Identity = 188/268 (70.15%), Postives = 209/268 (77.99%), Query Frame = 1 Query: 1 MVRSGFVALACAALAASANALKVVTPSADLDVVADRTYTVEWTGADS-GRFEIDLYHCGSMCMEDSCGEWVTALCPYGESGCPDNEGDYDIVMPEPMMGVSDSGYKVRVMDVSDEGEMDCSDAFTLVASAEAPF--DAEDYSLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSKVDRFDIDLYTTDGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPADTPSGEYSIRVGRFEDKTMFGCSGTFMVE-GDDDD--------MSMSYRF 768 M R+GFVALAC L A ANALKV TPS L V+ADRTYTVEWTG S RFEIDLY+CGSMCMED CG+WVTALCPYGE GCPDNEGDYDIVMPEPM+G S SGYKVRV D+ DE + DCSD F L+AS+EAP D + +L VTSPA+GD+A EYTVEFDY+NGVGS VDRF IDLY DG GDCGTYV SICDK +IGCKDSMGDYDVEIP DT +GEY IRV RFED +++ CSGTF +E GDD D S+SYRF Sbjct: 1 MTRTGFVALACGMLGA-ANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDSDXXXXXEDAFSLSYRF 267
BLAST of mRNA_C-linearis_contig102.793.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 341 bits (875), Expect = 5.220e-110 Identity = 175/259 (67.57%), Postives = 202/259 (77.99%), Query Frame = 1 Query: 1 MVRSGFVALACAALAASANALKVVTPSADLDVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGEWVTALCPYGESGCPDNEGDYDIVMPEPMMGVSDSGYKVRVMDVSDEGEMDCSDAFTLVASAEAPF--DAEDYSLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSKVDRFDIDLYTTDGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPADTPSGEYSIRVGRFEDKTMFGCSGTFMVEGDDDDMSMSYRF 768 MVR+GFVALAC L A+AL+VVTP+A VV+ R YTVEW+G S RFEIDLY+C SMCMED CGEWVTALCPYGE GCPDNEGDYDIVMPEPM G S SGYKVRV DV DE DCSD F L+A A+AP DA +TVTSP+ GD A+AGEEYTVEFDY+NG+GS V RF IDLY G+GDCGT++ ++CDK +IGCKDSMGDYDVEIP D +G Y+IRVG FED++++GCS F + G DD SMSYRF Sbjct: 2 MVRTGFVALACGMLGV-ASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDS-SMSYRF 258
BLAST of mRNA_C-linearis_contig102.793.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 329 bits (843), Expect = 2.790e-105 Identity = 165/257 (64.20%), Postives = 196/257 (76.26%), Query Frame = 1 Query: 1 MVRSGFVALACAALAASANALKVVTPSADLDVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGEWVTALCPYGESGCPDNEGDYDIVMPEPMMGVSDSGYKVRVMDVSDEGEMDCSDAFTLVASAEAPFDAE-DYSLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSKVDRFDIDLYTTDGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPADTPSGEYSIRVGRFEDKTMFGCSGTFMVEGDDDDMSMSYRF 768 M R+ F A+A L+A ANAL+VV+P + V+ADR YTVEWTG +GRFEIDLY+C S CM+D CG+WVTALCPYG GCPD+ GDYDI+MPEPM G S SGYKV V + DE +M CSD FTL+AS +AP E YSLTVTSP+ GD A AGE YTVE+DY NG GS DRF +DLY GTGDCGTYVT++CD+ SIGC DS GDYDVEIP+DTP+G YSIRVG F+D+ M+ CS TF V+ DDM++S RF Sbjct: 1 MARTAFAAVAFGMLSA-ANALEVVSPDGGISVLADRAYTVEWTGTTTGRFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEMGYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTS-DDMTISMRF 254
BLAST of mRNA_C-linearis_contig102.793.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 325 bits (832), Expect = 1.230e-103 Identity = 168/254 (66.14%), Postives = 189/254 (74.41%), Query Frame = 1 Query: 1 MVRSGFVALACAALAASANALKVVTPSADLDVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGEWVTALCPYGESGCPDNEGDYDIVMPEPMMGVSDSGYKVRVMDVSDEGEMDCSDAFTLVASAEAPFDAE-DYSLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSKVDRFDIDLYTTD-GTGDCGTYVTSICDKESIGCKDSMGDYDVEIPADTPSGEYSIRVGRFEDKTMFGCSGTFMVEGDDDDMSM 756 M R+ F ALA L A ANAL+VV+P+A + V+ADRTYTVEWTG RFEIDLY+CGS CMED CG+WVTALCPYG GCPD +GDYDIVMPEPM G S SGYKV V D +DE M CS FTLVAS +AP E YSLTVTSP+ GD A AG YTVE+DY NG+GS DRF IDLY+ GTGDCGTYV ++CDK SIGC DS GDYDVEIP+DTP+G YS+RVG F D MF CS F + D DMSM Sbjct: 1 MARTAFAALAFGMLGA-ANALEVVSPAAGISVIADRTYTVEWTGTSDSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTS-SGYKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIVNDRTDMSM 252
BLAST of mRNA_C-linearis_contig102.793.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 323 bits (828), Expect = 4.550e-103 Identity = 169/258 (65.50%), Postives = 199/258 (77.13%), Query Frame = 1 Query: 1 MVRSGFVALACAALAASANALKVVTPSADLDVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGEWVTALCPYGESGCPDNEGDYDIVMPEPMMGVSDSGYKVRVMDVSDEGEMDCSDAFTLVASAEAPFDAEDYS--LTVTSPAAGDMAKAGEEYTVEFDYNNGVGSKVDRFDIDLYTTDGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPADTPSGEYSIRVGRFEDKTMFGCSGTFMVEGDDDDMSMSYRF 768 M R+ F ALA L A ANAL+VV+P+A VVAD YTVEWTGA SGR++IDLY+CGS+CMED CG+WVTALCPYG+ GCPD +GDYD+VMPEPM G S SGYKV V D SDE + CS FTL+AS EAP DA D ++VTSP+ GD A AG EYTVEFDY+NG+GS V+RF IDLY++ G+GDCGTYVT+ICDK SIGCKDS GDYDV IP+ T SG YSIRVG FED ++GCS +F + G + SMS RF Sbjct: 1 MARTAFAALAFGMLGA-ANALEVVSPAAGDMVVADSAYTVEWTGATSGRYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDYGCSGDFTLIASTEAP-DATDMGAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGE---SMSVRF 252
BLAST of mRNA_C-linearis_contig102.793.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 320 bits (820), Expect = 1.570e-101 Identity = 158/235 (67.23%), Postives = 186/235 (79.15%), Query Frame = 1 Query: 49 SANALKVVTPSADLDVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGEWVTALCPYGESGCPDNEGDYDIVMPEPMMGVSDSGYKVRVMDVSDEGEMDCSDAFTLVASAEAPF--DAEDYSLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSKVDRFDIDLYTTDGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPADTPSGEYSIRVGRFEDKTMFGCSGTFMVEGDDD 744 +A+AL+VVTP+ VVA R YTVEWTG S R+EIDLY+CGSMCMED CG+WVTALCPYGE GCPDNEGDYDIVMPEPM G S SGYKVRV DV D+ DCSD F L+A AEAP DA +TVTSP++GD A+AGEEYTVEFDY+NG+GS V RF IDLY+ G+GDCGT++ ++CDK +IGCKDSMGDYDVEIP D +G Y+IRVG FED +++GCS F + G DD Sbjct: 4 AASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADD 238
BLAST of mRNA_C-linearis_contig102.793.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 300 bits (768), Expect = 2.990e-94 Identity = 158/236 (66.95%), Postives = 178/236 (75.42%), Query Frame = 1 Query: 1 MVRSGFVALACAALAASANALKVVTPSADLDVVADRTYTVEWTGADS-GRFEIDLYHCGSMCMEDSCGEWVTALCPYGESGCPDNEGDYDIVMPEPMMGVSDSGYKVRVMDVSDEGEMDCSDAFTLVASAEAPF--DAEDYSLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSKVDRFDIDLYTTDGTGDCGTYVTSICDKESIGCKDS----MGDYDVEIPADTPSGEYSIRVGRF 687 M R+GFVALAC L A ANALKV TPS L V+ADRTYTVEWTG S RFEIDLY+CGSMCMED CG+WVTALCPYGE GCPDNEGDYDIVMPEPM G S SGYKVRV D+ DE + DCSD F L+AS+EAP D + +L VTSPA+GD+A EYTVEFDY+NGVGS+VDRF IDLY DG GDCGTYV SICDK +IGCKDS G + V+ G +S+ V R+ Sbjct: 2 MARTGFVALACGMLGA-ANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDSNPVRRGRWRVQDSGGPLRGRFSLLVLRY 236
BLAST of mRNA_C-linearis_contig102.793.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 276 bits (706), Expect = 6.810e-85 Identity = 149/257 (57.98%), Postives = 173/257 (67.32%), Query Frame = 1 Query: 1 MVRSGFVALACAALAASANALKVVTPSADLDVVADRTYTVEWTGADSGRFEIDLYHCGSMCMEDSCGEWVTALCPYGESGCPDNEGDYDIVMPEPMMGVSDSGYKVRVMDVSDEGEMDCSDAFTLVASAEAPFDAEDYSLTVTSPAAGDMAKAGEEYTVE-FDYNNGVGSKVDRFDIDLYTTDGTGDCGTYVTSICDKESIGCKDSMGDYDVEIPADTPSGEYSIRVGRFEDKTMFGCSGTFMVEGDDDDMSMSYRF 768 M R+ F ALA L A NAL+V +P+A +VA + TVEWTG SGRF+IDLY+CGS+CMED CG+WVTALCPYG+ GCPD +GDYD+VMPEPM G S SGYKV V D SDE +M CS FTLVASA FD++NG GS V+RF IDLY + G+GDCGTYVTSICDK SIGCKDS GDYDV IP+DT SG YSIRVG FED +FGCS +F + G + SMS RF Sbjct: 1 MARTAFAALAFGMLGA-VNALEVTSPAAGDMIVAASSTTVEWTGTSSGRFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIG--GESSMSVRF 253
BLAST of mRNA_C-linearis_contig102.793.1 vs. uniprot
Match: A0A6H5KR87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR87_9PHAE) HSP 1 Score: 255 bits (651), Expect = 1.290e-77 Identity = 128/193 (66.32%), Postives = 146/193 (75.65%), Query Frame = 1 Query: 184 MEDSCGEWVTALCPYGESGCPDNEGDYDIVMPEPMMGVSDSGYKVRVMDVSDEGEMDCSDAFTLVASAEAPFDAE-DYSLTVTSPAAGDMAKAGEEYTVEFDYNNGVGSKVDRFDIDLYTTD-GTGDCGTYVTSICDKESIGCKDSMGDYDVEIPADTPSGEYSIRVGRFEDKTMFGCSGTFMVEGDDDDMSM 756 MED CG+WVTALCPYG GCPD +GDYDIVMPEPM G S SGYK+ V D +DE M CS FTLVAS +AP E YSLTV SP+ GD+A AGE YTVE+DYNNG+GS DRF IDLYT GTGDCGTYV ++CDK +IGC DS GDYDVEIP+DTP+G YS+RVG F D+ MF CS F + D D+SM Sbjct: 1 MEDDCGDWVTALCPYGADGCPDTQGDYDIVMPEPMDGTS-SGYKIMVTDSNDESSMGCSGDFTLVASTDAPAAGEVGYSLTVNSPSDGDIAMAGEVYTVEWDYNNGLGSSKDRFAIDLYTYGTGTGDCGTYVATLCDKPTIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDEIMFDCSEAFEIVNDSTDLSM 192 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 19 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.793.1 >prot_C-linearis_contig102.793.1 ID=prot_C-linearis_contig102.793.1|Name=mRNA_C-linearis_contig102.793.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=257bp MVRSGFVALACAALAASANALKVVTPSADLDVVADRTYTVEWTGADSGRFback to top mRNA from alignment at C-linearis_contig102:426422..430062- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.793.1 ID=mRNA_C-linearis_contig102.793.1|Name=mRNA_C-linearis_contig102.793.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3641bp|location=Sequence derived from alignment at C-linearis_contig102:426422..430062- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:426422..430062- >mRNA_C-linearis_contig102.793.1 ID=mRNA_C-linearis_contig102.793.1|Name=mRNA_C-linearis_contig102.793.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1542bp|location=Sequence derived from alignment at C-linearis_contig102:426422..430062- (Chordaria linearis ClinC8C monoicous)back to top |