mRNA_C-linearis_contig102.791.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.791.1 vs. uniprot
Match: D7FH15_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH15_ECTSI) HSP 1 Score: 331 bits (848), Expect = 1.280e-106 Identity = 171/230 (74.35%), Postives = 185/230 (80.43%), Query Frame = 2 Query: 269 FDIESSI---TSNVRERQ---QQQQHRRVAVRPSRGLQIAKPTPFEPITDPFAFVCDMVGRPKFGHQYVLCPDRCRKRGDRGVGLSVGPHWAGVIYTMSIIGVITLFLAKVLVGPDVAPWCQPVIAGCSFVTVIFLLATAVADPGIVVESAEXXXXXXXXXXEECSIWTPQGAEHXXXXXXXIFGLDHHCPWMGKCVGRGNIVWFRLFNGCWILFLSFLMVVMPWVNSHK 940
FDIESS + VRE Q R RPSRG+Q+A P PFEPITDPFAFVC+M RPKFGHQYVLCP+R R+RGDR VGLSVGPHWAGVIYT+S+I VITLFL +VL+GP+VAPWCQPVI CS VTV+FLLATAVADPGIVVESAE EECSIW PQGAEHXXXXXXXIFGLDH PWMGKCVGRGNI+WFRLFNG WILFLSFLMV MPW+NSHK
Sbjct: 34 FDIESSSFGGSGTVREXXXXXQDHTRDRAVSRPSRGIQVATPAPFEPITDPFAFVCEMARRPKFGHQYVLCPERSRRRGDRRVGLSVGPHWAGVIYTISMIFVITLFLVRVLIGPNVAPWCQPVIVACSMVTVVFLLATAVADPGIVVESAESEGASCGYC-EECSIWRPQGAEHXXXXXXXIFGLDHXXPWMGKCVGRGNILWFRLFNGSWILFLSFLMVAMPWINSHK 262
BLAST of mRNA_C-linearis_contig102.791.1 vs. uniprot
Match: A0A6V1ME69_HETAK (Palmitoyltransferase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1ME69_HETAK) HSP 1 Score: 128 bits (321), Expect = 4.200e-30 Identity = 71/179 (39.66%), Postives = 92/179 (51.40%), Query Frame = 2 Query: 395 TDPFAFVCDMVGRPKFGHQYVLCPDRCRKRGDRGVGLSVGPHWAGVIYTMSIIGVITLFLAKVLVGPDVAPWCQPVIAGCSFVTVIFLLATAVADPGIV----VESAEXXXXXXXXXXEECSIWTPQGAEHXXXXXXXIFGLDHHCPWMGKCVGRGNIVWFRLFNGCWILFLSFLMVVM 919
TDPF F+C G P G+ Y+L R D ++VGPHW+G ++T II T FLA ++ G A GCS + L A DPGIV +A ++CSI+ P+GA H I G DHHCPWMGKC+GRGNI +F LFN W +L FL ++
Sbjct: 55 TDPFYFICKRFGFPMLGNNYIL-----RTTDDGDPRMTVGPHWSGTVFTTVIILSGTYFLAPLVWGRPAALAATAFFFGCSTAS---LWLVACTDPGIVRRATAPAAAAAAADGLRFCDKCSIYQPEGAVHCNDCGVCIEGHDHHCPWMGKCLGRGNICYFWLFNASWFFYLLFLFYII 225
BLAST of mRNA_C-linearis_contig102.791.1 vs. uniprot
Match: A0A7R9Y9J1_9STRA (Palmitoyltransferase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9J1_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 1.250e-17 Identity = 59/192 (30.73%), Postives = 90/192 (46.88%), Query Frame = 2 Query: 395 TDPFAFVCDMVGRP-KFGHQYVLCPDRCRKRGDRGVGLSVGPHWAGVIYTMSII-GVITLFLAK-VLVGPDVAPWCQPVIAGCSFVTVIFLLATAVADPGIVVESA----EXXXXXXXXXXEECSIWTPQGAEHXXXXXXXIFGLDHHCPWMGKCVGRGNIVWFRLFNGCWILFLSFLMVVMPWVNSHKGTK 949
+DP AF C ++ K GHQYVL R D ++ GPHW+G ++ ++I GV+ F + +G + G +T + L TA +DPGI+ + A + + C +W P G +H I DHHC WMGKCVG+GN+ F FN W+ +L + + + S +
Sbjct: 47 SDPLAFACRLLPCVNKLGHQYVLLT-----RADGRPLVTFGPHWSGTLFAQAVIVGVVWGFTKQHTPIGKSAVASAGMMFFG--LLTTVLLWITAGSDPGILRKHAALRDDEDAAEDDVYCDICDMWGPPGTKHCRECGVCILKHDHHCVWMGKCVGQGNMRSFIYFNMAWVSAFMYLFLCLGLLASRAKAR 231
BLAST of mRNA_C-linearis_contig102.791.1 vs. uniprot
Match: A0A3R6XQH8_9STRA (Palmitoyltransferase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XQH8_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 8.080e-17 Identity = 56/181 (30.94%), Postives = 76/181 (41.99%), Query Frame = 2 Query: 488 DRGVGLSVGPHWAGVIYTMSIIGVITL-----------FLAKVLVGPDVA------PWCQPVIAGCSFVTVIFLLATAVADPGIV---------------------VESAEXXXXXXXXXXEECSIWTPQGAEHXXXXXXXIFGLDHHCPWMGKCVGRGNIVWFRLFNGCWILFLSFLMVV 916
+R + VGPHW GV+ T+S+I V T+ F + V DVA W + T FL T DPGIV + S + C + + EH I DHHCPWMGKC+G+ N+ WF+LFN W+L+L F++VV
Sbjct: 12 ERAPFILVGPHWIGVLVTLSLIVVSTVLFIGQQYAVLHFQSHVAYSHDVARCRGLDAWYTCLSVFMCIATTYFLFKTTCTDPGIVPRGTLHTDPALISRCSYCGGDLRSLSTARLIQLLIIDICDVHQSRHTEHCDDCGVCIEKYDHHCPWMGKCIGKANMKWFQLFNLAWVLYLVFVLVV 192
BLAST of mRNA_C-linearis_contig102.791.1 vs. uniprot
Match: A0A2P4YE67_9STRA (Palmitoyltransferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YE67_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 5.480e-16 Identity = 57/193 (29.53%), Postives = 89/193 (46.11%), Query Frame = 2 Query: 509 VGPHWAGVIYTMSIIGVIT-LFLAKVLVGPDVAPWCQPVIA-GCSFVTVIFLLATAVADPGIVVESAEXXXXXXXXXXEE---------------------------CSIWTPQGAEHXXXXXXXIFGLDHHCPWMGKCVGRGNIVWFRLFNGCWILFLSFLMVV----MPWVNSHKGTKEP*RVTSRAYYDG 988
VGPHW GV+ T++II V T +FL++ + W + +I G +T+ +L T DPGIV S + E CSI + +H + G DHHCPWMGKC+GRGN+ F++FN W++++ F++ + + W + T + R TS ++ G
Sbjct: 99 VGPHWIGVLVTLAIILVATSMFLSQHV---QTMSWYETLITLGLCGMTLYYLYQTTCTDPGIVQSSKQKDVSQTDDENEVSELEAGQLPVEAFGPPRRSSRRRYCDICSIEQDRTTDHCEDCGVCVAGYDHHCPWMGKCIGRGNMHAFKMFNVSWVIYVCFVLFIAITSVDWGQAAVQTLQ--RTTSGSWVHG 286
BLAST of mRNA_C-linearis_contig102.791.1 vs. uniprot
Match: K8Z302_NANGC (Palmitoyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z302_NANGC) HSP 1 Score: 90.1 bits (222), Expect = 7.660e-16 Identity = 48/139 (34.53%), Postives = 76/139 (54.68%), Query Frame = 2 Query: 506 SVGPHWAGVIYTMSIIGVIT-LFLAKVLVGPDVAPWCQPVIAGCSFVTVIFLLATAVADPGIVVESAEXXXXXXXXXXEECSIWTPQGAEHXXXXXXXIFGLDHHCPWMGKCVGRGNIVWFRLFNGCWILFLSFLMVVM 919
+VGPHWAGV++T+ ++ + + LF++ V V + P+ V + +T++ LL TA DPG++ S C ++T A H I G+DHHCPWMG CVG GN+ F FN W+ ++ F++ +
Sbjct: 206 TVGPHWAGVVFTVFLVCLASFLFISHVCV--PLGPFFVLVAGVYTGLTLLTLLRTACLDPGLITRSVPPSLPRRKYC-SICRLYTGPTARHCEDCGVCIEGMDHHCPWMGHCVGSGNMGAFLCFNCVWLTYVLFVLACL 341
BLAST of mRNA_C-linearis_contig102.791.1 vs. uniprot
Match: A0A3R7ML61_9STRA (Palmitoyltransferase n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7ML61_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.360e-15 Identity = 49/138 (35.51%), Postives = 69/138 (50.00%), Query Frame = 2 Query: 509 VGPHWAGVIYTMSIIGVIT-LFLAKVLVGPDVAPWCQPVIA-GCSFVTVIFLLATAVADPGIVVESAEXXXXXXXXXXEECSIWTPQGAEHXXXXXXXIFGLDHHCPWMGKCVGRGNIVWFRLFNGCWILFLSFLMVV 916
VGPHW GV+ T+ II V + +FL + V PW + G +T+ +L T DPGIV S + E Q G DHHCPWMGKC+G+GN+ F++FN W+L++ F++ V
Sbjct: 24 VGPHWIGVLVTLCIIIVSSGMFLVQQY---PVMPWYYTAMTFGLCGMTLYYLFLTTCTDPGIVRPSRQKDLALDETESSELEAGQLQNGNGVEA------GYDHHCPWMGKCIGKGNMYAFKMFNVSWVLYVVFVLFV 152
BLAST of mRNA_C-linearis_contig102.791.1 vs. uniprot
Match: A0A7S2IEB6_9STRA (Palmitoyltransferase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IEB6_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 1.540e-15 Identity = 52/163 (31.90%), Postives = 75/163 (46.01%), Query Frame = 2 Query: 443 GHQYVLCPDRCRKRGDRGVGLSVGPHWAGVIYTMSIIGVITLFLAKVLVGPDVAPWCQPVIAGCSFVTV---IFLLATAVADPGIVVESAEXXXXXXXXXXEE------CSIWTPQGAEHXXXXXXXIFGLDHHCPWMGKCVGRGNIVWFRLFNGCWILFLSF 904
G VLCP G+G+ VGPHW G I T ++ + F + +G D W +A C F TV + L+ A DPG++ + + CS++ P A H + G DHHCPWMG C+G+ N+ F FN W+L+L +
Sbjct: 264 GDTTVLCPTLYNYN---GLGV-VGPHWCGTICTFGLLWGASYFYIQKTLGDDELGWMT--LATCVFFTVWSSVSLVRVAFKDPGVITRERQVGIENEGRDLSQWRYCDICSVYQPPDAAHCPDCNVCVEGYDHHCPWMGTCIGKRNMSAFVTFNFSWLLWLLY 420
BLAST of mRNA_C-linearis_contig102.791.1 vs. uniprot
Match: A0A7S2GXV6_9STRA (Palmitoyltransferase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GXV6_9STRA) HSP 1 Score: 86.3 bits (212), Expect = 2.070e-15 Identity = 54/166 (32.53%), Postives = 77/166 (46.39%), Query Frame = 2 Query: 389 PITDPFAFVCDMVGRPKFGHQYVLCP-DRCRKRGDRGVGLSVGPHWAGVIYTMSIIGVITLFLAKVLVGPDVAPWCQPVIAGCSF--VTVIFLLATAVADPGIVVESAEXXXXXXXXXXEECSIWTPQGAEHXXXXXXXIFGLDHHCPWMGKCVGRGNIVWFRLFN 877
P DP + VC+ + + + YVL D+ R + + VGPHWAG+ T SI+ L + + + F VT+ FL T +DPGIV S + C + P A H + LDHHCPW+GKC+G+GN+ WF+ FN
Sbjct: 73 PSGDPCSKVCEHLRISRLANSYVLLQLDKPR------LLILVGPHWAGLASTTSIV----LLSSVAFISFQTLHSTGLTVIAIIFCVVTLTFLFLTGCSDPGIVRTSFVSESGQTPCFCDVCGVNQPPDAMHCDECGCCVEELDHHCPWIGKCIGKGNMRWFKAFN 228
BLAST of mRNA_C-linearis_contig102.791.1 vs. uniprot
Match: A0A6U3TQ93_9STRA (Palmitoyltransferase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TQ93_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 3.810e-14 Identity = 54/171 (31.58%), Postives = 77/171 (45.03%), Query Frame = 2 Query: 443 GHQYVLCPDRCRKRGDRGVGLSVGPHWAGVIYTMSIIGVITLFLAKVLVGPDVAPWCQPVIAGCSFVTV---IFLLATAVADPGIVVES-----AEXXXXXXXXXXEECSIWTPQGAEHXXXXXXXIFGLDHHCPWMGKCVGRGNIVWFRLFNGCWILFLSFLMVVMPWVN 931
G VLCP R+ G+G+ VGPHW G + T I+ + F K D + C F T+ I L A DPG+V + + CS++ P A H + G DHHCPWMG+C+G+ N+ F FN W+L+L + ++ WV
Sbjct: 224 GDTTVLCPSLYRRY---GLGV-VGPHWPGTLCTFGILWGASYFYTKKAYEDDSLG--NITLGICCFFTLWSTISLCRVAFKDPGVVTRERQQNMVDGRDLTNWRYCDICSVYQPPDAAHCPDCNVCVEGYDHHCPWMGQCIGKKNMSAFVTFNFSWLLYLVYAIL---WVT 385 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.791.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.791.1 >prot_C-linearis_contig102.791.1 ID=prot_C-linearis_contig102.791.1|Name=mRNA_C-linearis_contig102.791.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=273bp MSYKEDALPLLIENEAQQRHQQGFGEDEGDQHPHGILPPPMSSFDIESSIback to top mRNA from alignment at C-linearis_contig102:404995..407899+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.791.1 ID=mRNA_C-linearis_contig102.791.1|Name=mRNA_C-linearis_contig102.791.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2905bp|location=Sequence derived from alignment at C-linearis_contig102:404995..407899+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:404995..407899+ >mRNA_C-linearis_contig102.791.1 ID=mRNA_C-linearis_contig102.791.1|Name=mRNA_C-linearis_contig102.791.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at C-linearis_contig102:404995..407899+ (Chordaria linearis ClinC8C monoicous)back to top |