mRNA_C-linearis_contig102.787.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.787.1 vs. uniprot
Match: A0A6H5JRB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRB1_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 1.620e-17 Identity = 90/120 (75.00%), Postives = 101/120 (84.17%), Query Frame = 1 Query: 1126 LLQHSAEYESSTNSYGLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDASGLCRASLANLDEVAGQGQLRAIIWLSDRGARASTLAVDRAASAGHADVVDYLLRNRHE 1485
+L H A + S+N+YGLA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL SG+CRASLANLDEVA +GQLRA+IWL++R ARAST AVDRAA AGH V+YLL +R E
Sbjct: 100 MLDHKAHHRCSSNAYGLAASRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHDSGICRASLANLDEVAREGQLRALIWLNERDARASTSAVDRAAEAGHLGTVEYLLHHRRE 219
BLAST of mRNA_C-linearis_contig102.787.1 vs. uniprot
Match: D7FH20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH20_ECTSI) HSP 1 Score: 93.6 bits (231), Expect = 3.710e-17 Identity = 46/60 (76.67%), Postives = 52/60 (86.67%), Query Frame = 1 Query: 1306 ASGLCRASLANLDEVAGQGQLRAIIWLSDRGARASTLAVDRAASAGHADVVDYLLRNRHE 1485
ASG+CRASLANLDEVA +GQLRA+IWLS+RGARAST AVDRAA AGH V+YLL +R E
Sbjct: 208 ASGICRASLANLDEVAREGQLRALIWLSERGARASTSAVDRAAEAGHLGTVEYLLHHRRE 267
BLAST of mRNA_C-linearis_contig102.787.1 vs. uniprot
Match: F4PPW9_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PPW9_CAVFA) HSP 1 Score: 59.3 bits (142), Expect = 2.500e-5 Identity = 40/107 (37.38%), Postives = 54/107 (50.47%), Query Frame = 1 Query: 1339 LDEVAGQGQLRAIIWLSDRGARASTLAVDRAASAGHADVVDYLLRNRHEGCSPEALVGAAGRGHLAVVKLLRELRPEQCGGCLSARAVAAAAGHSEVARWLDESDPE 1659
LD A G L+ + +L + S +A+D AA G+ VVDYLL NR EGCS EA+ A G L +++ L C S RA+ AA + V WL + E
Sbjct: 176 LDLAASNGHLQVVEYLHNEKYGCSVVALDFAAKRGYHHVVDYLLDNRTEGCSSEAIDQVACTGDLEMIQKLHFRAKAPC----SYRAMNNAAKYLNVVEWLSNNRQE 278 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.787.1 >prot_C-linearis_contig102.787.1 ID=prot_C-linearis_contig102.787.1|Name=mRNA_C-linearis_contig102.787.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=646bp MSTAPPTEESAELALVALFSQVMQTAELFSACMAYQDGVKTALYEDGDVAback to top mRNA from alignment at C-linearis_contig102:363959..374634- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.787.1 ID=mRNA_C-linearis_contig102.787.1|Name=mRNA_C-linearis_contig102.787.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=10676bp|location=Sequence derived from alignment at C-linearis_contig102:363959..374634- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:363959..374634- >mRNA_C-linearis_contig102.787.1 ID=mRNA_C-linearis_contig102.787.1|Name=mRNA_C-linearis_contig102.787.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3876bp|location=Sequence derived from alignment at C-linearis_contig102:363959..374634- (Chordaria linearis ClinC8C monoicous)back to top |