mRNA_C-linearis_contig102.786.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.786.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE) HSP 1 Score: 168 bits (425), Expect = 2.120e-46 Identity = 84/165 (50.91%), Postives = 110/165 (66.67%), Query Frame = 3 Query: 177 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 665
GKEK R+T+VL+V DGKKV PRII+KGTPF+ KG ST P KN++ ++ PANR + D+PA G+ GVQ+ SW D + + W++ + RP S Q IL LDDFKCHKDE + L A T ++IPGGLTP++QPLDR +NK+ KR +R KYT
Sbjct: 149 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYT 313
BLAST of mRNA_C-linearis_contig102.786.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE) HSP 1 Score: 159 bits (403), Expect = 1.560e-44 Identity = 82/166 (49.40%), Postives = 107/166 (64.46%), Query Frame = 3 Query: 174 SGKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 665
+GKEK R+T+VL+V DGKKV PRII+KGTPF+ KG ST P KN++ ++ PANR + +PA G+ GVQ SW D + + W++ + RP S Q IL LDDFKCHKDE F L A T + IPGG+T ++QPLDR +NK+ KR +R KYT
Sbjct: 9 AGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHAHPANGMSFGVQGKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIIIFIPGGMTLLLQPLDRLLNKQMKRLLRGKYT 174
BLAST of mRNA_C-linearis_contig102.786.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI) HSP 1 Score: 158 bits (400), Expect = 2.180e-44 Identity = 78/167 (46.71%), Postives = 108/167 (64.67%), Query Frame = 3 Query: 177 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSK-KTKKGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYTHW 671
GKEK R+T+ L+V GD KKV R I+KGTP + + KG +T+P KN++ ++ +P NR++ YP GG+ GVQ+ SWCD + W+ + RP S Q IL LDDFKCHKD+ F +L +A T + IPGGLTP++QPLDR +NK KR +R YT++
Sbjct: 87 GKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253
BLAST of mRNA_C-linearis_contig102.786.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE) HSP 1 Score: 161 bits (408), Expect = 1.680e-43 Identity = 83/165 (50.30%), Postives = 106/165 (64.24%), Query Frame = 3 Query: 177 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 665
GKEK R+T+VL+V DGKKV PRII+KGTPF KG ST P KN++ ++ PANR + +PA G+ GVQ+ SW D + + W++ + RP S Q IL LDDFKCHKDE F L A T + IPG LTP++QPLDR +NK+ KR +R KYT
Sbjct: 149 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYT 313
BLAST of mRNA_C-linearis_contig102.786.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE) HSP 1 Score: 162 bits (409), Expect = 6.030e-43 Identity = 81/165 (49.09%), Postives = 108/165 (65.45%), Query Frame = 3 Query: 177 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 665
GKEK R+T+ L+V DG KV RII+KGTPFV T KG +T+P KN++ ++ +PANR++ P GG+ GVQ+ SWCD + W+ + + RP S Q IL LDDFKCHKD+ F L +A T + IPGGLTP++QPLDR +NK+ KR +R YT
Sbjct: 262 GKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYT 426
BLAST of mRNA_C-linearis_contig102.786.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE) HSP 1 Score: 162 bits (409), Expect = 1.800e-42 Identity = 81/165 (49.09%), Postives = 106/165 (64.24%), Query Frame = 3 Query: 177 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 665
G EK R+T+VL+V DGKKV PRII++GTPF+ KG ST+P KN + ++ PANR + +PA G+ GVQ+ SW D + + W++ + RP S Q IL LDDFKCH DE F L A T + IPGGLTP++QPLDR +NK+ KR +R KYT
Sbjct: 344 GNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYT 508
BLAST of mRNA_C-linearis_contig102.786.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE) HSP 1 Score: 155 bits (393), Expect = 1.460e-41 Identity = 80/165 (48.48%), Postives = 105/165 (63.64%), Query Frame = 3 Query: 177 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 665
G+EK R+T+VL+V DGKKV RII+ GTPF+ KG ST P KN++ ++ P NR + +PA G+ GVQ+ SW D + + W + + RP S Q IL LDDFKCHKDE F L A T + IPGGLTP++QPLDR +NK+ KR +R+KYT
Sbjct: 83 GEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYT 247
BLAST of mRNA_C-linearis_contig102.786.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE) HSP 1 Score: 151 bits (381), Expect = 2.520e-41 Identity = 79/164 (48.17%), Postives = 102/164 (62.20%), Query Frame = 3 Query: 177 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKY 662
GKE+ R+ +VL+V DGKKV PRI +KGTPF KG ST P KN++ ++ PANR + +PA GV GVQ+ SW D + + W++ + RP S Q IL LDDFK HKDE F L A T + IPGGLTP++QPLD +NK+ KR +R KY
Sbjct: 30 GKEQERFALVLAVMADGKKVSPRITFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGVSFGVQEKSWSDQRECNGWISGRWKLRPNNGSIVQQRPCILVLDDFKRHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDCMLNKQMKRLLRGKY 193
BLAST of mRNA_C-linearis_contig102.786.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE) HSP 1 Score: 156 bits (395), Expect = 6.530e-41 Identity = 78/160 (48.75%), Postives = 105/160 (65.62%), Query Frame = 3 Query: 192 RYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLTEEFMRRPG-ASGFSQPASILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 665
R+T+ L+V DGKKV RII+KGTPFV T KG +T+P KN++ ++ +PANR++ P GG+ GVQ+ SWCD + W+ + + RP S Q IL LDDFKCHKD+ F L +A T + IPGGLTP++QPLDR +NK+ KR +R YT
Sbjct: 274 RFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYT 433
BLAST of mRNA_C-linearis_contig102.786.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE) HSP 1 Score: 152 bits (384), Expect = 3.280e-39 Identity = 79/173 (45.66%), Postives = 104/173 (60.12%), Query Frame = 3 Query: 177 GKEKLRYTVVLSVRGDGKKVKPRIIYKGTPFVSKKTK-KGASTKPGKNTLTYQHMPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLTEEFMRRPGASGFSQPAS---------ILTLDDFKCHKDEAFQQKLASKAKTEAVMIPGGLTPVVQPLDRSINKEFKRGMRAKYT 665
GKEK R+T+VL+V DGK V P II+KGTPF+ KG ST P KN++ ++ PANR + +PA G+ GVQ+ SW + + W+ + P +P + IL LDDFKCHKDE F L A T + IPGGLTP++QPLDR +NK+ KR +R KYT
Sbjct: 303 GKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYT 475 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.786.1 >prot_C-linearis_contig102.786.1 ID=prot_C-linearis_contig102.786.1|Name=mRNA_C-linearis_contig102.786.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=121bp MPANRTQFDYPAGGVGLGVQKASWCDTTQTDAWLTEEFMRRPGASGFSQPback to top mRNA from alignment at C-linearis_contig102:357279..357976+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.786.1 ID=mRNA_C-linearis_contig102.786.1|Name=mRNA_C-linearis_contig102.786.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=698bp|location=Sequence derived from alignment at C-linearis_contig102:357279..357976+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:357279..357976+ >mRNA_C-linearis_contig102.786.1 ID=mRNA_C-linearis_contig102.786.1|Name=mRNA_C-linearis_contig102.786.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at C-linearis_contig102:357279..357976+ (Chordaria linearis ClinC8C monoicous)back to top |