mRNA_C-linearis_contig102.785.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 426 bits (1095), Expect = 7.970e-140 Identity = 199/251 (79.28%), Postives = 214/251 (85.26%), Query Frame = 3 Query: 27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGDSS 779
M RT FVALACGMLGAANALKV TP +GLTVI+DRTYTVEW GTSS+NRFEIDLYYCGS CM D+CG+WVT LCPYGE GCPDNEGDYDIVMPEPM GTSG GYKVRV DI +EEDADCSD+FYLLAS+EAP VGD DGPTL+VTSPA GD+A C EYTVEFDYDNGVGS VDRF+IDLY DG GDCGTYV SICDK +IGCKDS GDYDV+IPCDT AGEY +RV RFED SLY CS F + GD S
Sbjct: 1 MTRTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDADCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTIEEGDDS 251
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 378 bits (970), Expect = 2.110e-121 Identity = 180/249 (72.29%), Postives = 195/249 (78.31%), Query Frame = 3 Query: 27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGD 773
M RT FVALAC MLGAANAL+V TP L V++DRTYTVEW G S RFEIDLY+CGS CM D CG+WVT LCPYGE GCPDNEGDYDIVMPEPM G S GYKVRVMD+ +E+ DCSD FYL+AS +AP G G L VTSPA GD AEA EYTVEFDYDNGVGSKVDRFSIDLY DG GDCGTYVTSICDK SIGCKDS GDYDV+IP DT AG+Y +RVGRFED LY CS F ++ GD
Sbjct: 1 MARTGFVALACAMLGAANALEVVTPSADLIVVADRTYTVEWTGADSG-RFEIDLYHCGSMCMEDSCGDWVTALCPYGEEGCPDNEGDYDIVMPEPMSGESNSGYKVRVMDVSDEDSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIMGGD 248
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 369 bits (946), Expect = 8.130e-118 Identity = 172/251 (68.53%), Postives = 196/251 (78.09%), Query Frame = 3 Query: 27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGDSS 779
MVRT FVALACGMLG A+AL+V TP G V+S R YTVEW GT SN RFEIDLYYC S CM DECGEWVT LCPYGE GCPDNEGDYDIVMPEPM GTSG GYKVRV D+D+E+ +DCSD+FYL+A +AP DA GP + VTSP+ GD AEA EYTVEFDYDNG+GS V RF+IDLY GSGDCGT++ ++CDK +IGCKDS GDYDV+IP D AG Y +RVG FED S+Y CS F ++ D S
Sbjct: 2 MVRTGFVALACGMLGVASALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMCMEDECGEWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDEDSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEILGADDS 252
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: D7FH21_ECTSI (Imm downregulated 8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH21_ECTSI) HSP 1 Score: 364 bits (934), Expect = 2.860e-116 Identity = 169/207 (81.64%), Postives = 183/207 (88.41%), Query Frame = 3 Query: 27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDS 647
M RT FVALACGMLGAANALKV TP +GLTVI+DRTYTVEW GTSS+NRFEIDLYYCGS CM D+CG+WVT LCPYGE GCPDNEGDYDIVMPEPM GTSG GYKVRV DI +EEDADCSD+FYL+AS+EAP VGD DGPTL+VTSPA GD+A C EYTVEFDYDNGVGS+VDRF+IDLY DG GDCGTYV SICDK +IGCKDS
Sbjct: 2 MARTGFVALACGMLGAANALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMCMEDDCGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVWDIHDEEDADCSDEFYLIASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSRVDRFAIDLYRADGDGDCGTYVQSICDKPTIGCKDS 208
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 353 bits (907), Expect = 8.550e-112 Identity = 163/239 (68.20%), Postives = 190/239 (79.50%), Query Frame = 3 Query: 63 MLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGDSS 779
MLGAA+AL+V TP EG V++ R YTVEW GT SNNR+EIDLYYCGS CM DECG+WVT LCPYGE GCPDNEGDYDIVMPEPM GTSG GYKVRV D+D+++ DCSD+FYL+A EAP GDA GP + VTSP+ GD AEA EYTVEFDYDNG+GS V RF+IDLY+ GSGDCGT++ ++CDK +IGCKDS GDYDV+IP D AG Y +RVG FED S+Y CS F ++ D S
Sbjct: 1 MLGAASALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMCMEDECGDWVTALCPYGEDGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDDDSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEILGADDS 239
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 323 bits (829), Expect = 1.150e-100 Identity = 160/250 (64.00%), Postives = 187/250 (74.80%), Query Frame = 3 Query: 27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGDS 776
M RTAF ALA GMLGAANAL+V +P G V++D YTVEW G +S R++IDLYYCGS CM DECG+WVT LCPYG+ GCPD +GDYD+VMPEPM GTS G YKV V D +E D CS F L+AS EAP D G + VTSP+ GD A A EYTVEFDYDNG+GS V+RF+IDLY++ GSGDCGTYVT+ICDK SIGCKDS GDYDV IP T +G Y++RVG FED +Y CS F +V G+S
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGDMVVADSAYTVEWTGATSG-RYDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSG-YKVMVTDSSDESDYGCSGDFTLIASTEAPDATDM-GAYVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIVGGES 247
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 321 bits (823), Expect = 9.350e-100 Identity = 160/247 (64.78%), Postives = 190/247 (76.92%), Query Frame = 3 Query: 27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTD-GSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVV 764
M RTAF ALA GMLGAANAL+V +P G++VI+DRTYTVEW GTS ++RFEIDLYYCGS+CM DECG+WVT LCPYG GCPD +GDYDIVMPEPM GTS G YKV V D ++E CS F L+AS +AP G+ G +L VTSP+ GD A A YTVE+DY+NG+GS DRF+IDLY+ G+GDCGTYV ++CDK SIGC DS GDYDV+IP DTPAG Y+VRVG F D ++DCS F +V
Sbjct: 1 MARTAFAALAFGMLGAANALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGSFCMEDECGDWVTALCPYGADGCPDTQGDYDIVMPEPMAGTSSG-YKVVVTDSNDESSMGCSGDFTLVASTDAPAAGEV-GYSLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 320 bits (819), Expect = 3.600e-99 Identity = 153/249 (61.45%), Postives = 189/249 (75.90%), Query Frame = 3 Query: 27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGD 773
M RTAF A+A GML AANAL+V +P+ G++V++DR YTVEW GT++ RFEIDLYYC S+CM D CG+WVT LCPYG GCPD+ GDYDI+MPEPM GTS G YKV V + ++E D CSD F L+AS +AP+ G+ G +L VTSP+ GD A A YTVE+DY+NG GS DRF++DLY G+GDCGTYVT++CD+ SIGC DS GDYDV+IP DTPAG Y++RVG F+D +YDCS F V D
Sbjct: 1 MARTAFAAVAFGMLSAANALEVVSPDGGISVLADRAYTVEWTGTTTG-RFEIDLYYCNSFCMDDVCGDWVTALCPYGADGCPDSAGDYDIIMPEPMSGTSSG-YKVMVKNAEDESDMGCSDDFTLIASEDAPEAGEM-GYSLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEVDTSD 246
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: A0A6H5KP11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP11_9PHAE) HSP 1 Score: 279 bits (713), Expect = 9.460e-84 Identity = 142/251 (56.57%), Postives = 167/251 (66.53%), Query Frame = 3 Query: 27 MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFEIDLYYCGSYCMSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGDSS 779
M RTAF ALA GMLGA NAL+V +P G +++ + TVEW GTSS RF+IDLYYCGS CM DECG+WVT LCPYG+ GCPD +GDYD+VMPEPM GTS G YKV V D +E D CS +F L+AS FD+DNG GS V+RFSIDLY + GSGDCGTYVTSICDK SIGCKDS GDYDV IP DT +G Y++RVG FED ++ CS F ++ G+SS
Sbjct: 1 MARTAFAALAFGMLGAVNALEVTSPAAGDMIVAASSTTVEWTGTSSG-RFDIDLYYCGSVCMEDECGDWVTALCPYGDDGCPDTQGDYDVVMPEPMDGTSSG-YKVMVTDSSDESDMGCSGEFTLVASAXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXFDHDNGFGSSVNRFSIDLYMSGGSGDCGTYVTSICDKSSIGCKDSQGDYDVVIPSDTESGMYSIRVGVFEDPDVFGCSDSFEIIGGESS 248
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Match: A0A6H5JEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ8_9PHAE) HSP 1 Score: 281 bits (720), Expect = 1.570e-81 Identity = 131/189 (69.31%), Postives = 150/189 (79.37%), Query Frame = 3 Query: 210 MSDECGEWVTPLCPYGEAGCPDNEGDYDIVMPEPMKGTSGGGYKVRVMDIDNEEDADCSDQFYLLASNEAPKVGDADGPTLKVTSPAMGDIAEACNEYTVEFDYDNGVGSKVDRFSIDLYTTDGSGDCGTYVTSICDKESIGCKDSAGDYDVKIPCDTPAGEYAVRVGRFEDASLYDCSAPFMVVAGDS 776
+ DECGEWVT LCPYG GCPDNEGDYDIVMPEPM GTSG GYKVRV D+D +DADCSD+FYL+AS EAP VG D P L VTSP+ GD A+A EYTVEFDYDNGVGS+VDRF IDLY+ G+GDCGT+V ++CDKE+IGCKDS GDYDV+IP G Y++RVGRFED +LY CS F +V S
Sbjct: 12 VEDECGEWVTALCPYGSEGCPDNEGDYDIVMPEPMSGTSGSGYKVRVADVDGPQDADCSDEFYLMASAEAPVVGGPDAPYLMVTSPSAGDKAQAGGEYTVEFDYDNGVGSRVDRFKIDLYSIGGTGDCGTWVMNLCDKEAIGCKDSMGDYDVEIPETVVDGMYSIRVGRFEDDALYGCSGEFEIVGSSS 200 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.785.1 >prot_C-linearis_contig102.785.1 ID=prot_C-linearis_contig102.785.1|Name=mRNA_C-linearis_contig102.785.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=289bp MVRTAFVALACGMLGAANALKVKTPEEGLTVISDRTYTVEWDGTSSNNRFback to top mRNA from alignment at C-linearis_contig102:333666..338402- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.785.1 ID=mRNA_C-linearis_contig102.785.1|Name=mRNA_C-linearis_contig102.785.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4737bp|location=Sequence derived from alignment at C-linearis_contig102:333666..338402- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:333666..338402- >mRNA_C-linearis_contig102.785.1 ID=mRNA_C-linearis_contig102.785.1|Name=mRNA_C-linearis_contig102.785.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1734bp|location=Sequence derived from alignment at C-linearis_contig102:333666..338402- (Chordaria linearis ClinC8C monoicous)back to top |