mRNA_C-linearis_contig102.770.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig102.770.1 vs. uniprot
Match: D7G1C0_ECTSI (Lissencephaly-1 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1C0_ECTSI) HSP 1 Score: 573 bits (1476), Expect = 8.380e-196 Identity = 390/472 (82.63%), Postives = 409/472 (86.65%), Query Frame = 2 Query: 38 MVLTQKQRNDMHVGMLEYMMGQGGEFAEAAAAFAAAAGLEDSTGNEGFRGLLEKKWTSVVRLQRKVMDLEARLDQAQEDLKSGMRPGREKGGAAGSERILPRAPAKAVLAGHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGADCLKTLRGHDHNVSCVAWVPPAGDXXXXXXXXXXXXXXXAATGYCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVVESVAFAPQSAERTLSTV----GSADGEGAGRGRFIASGSRDKTVKLWNASVGQCLMSFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRSARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWECR*RRGLVAVAWG------ENR*TVYLLFAFDLFVSCFFGAVVQNVHPV 1423 MVLTQKQR+DMHVGMLEYM GQG +FA+AAAAFA A GLED+TGNE FRGLLEKKWTSVVRLQRKVMDLEARLDQAQ+DLKSG+RPGREKG A GS+R+LPRAPAK VL GHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGA+CLKTLRGHDHNVSCVAWVPPAGD XXXXXXXXXXXXX AATG+CTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VVES+AFAP+SAER L+T G GEGA R RF+ASGSRDKTVKLWNASVG CLM+FSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGR ARKLEDAHGH VTALAMHKTSPIVVSGGVD ELHVWE L WG E L F FFG + ++ + Sbjct: 1 MVLTQKQRHDMHVGMLEYMKGQGEDFADAAAAFAVATGLEDATGNESFRGLLEKKWTSVVRLQRKVMDLEARLDQAQQDLKSGVRPGREKG-AGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGAECLKTLRGHDHNVSCVAWVPPAGDTXXXXXXXXXXXXXEAATGFCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVESIAFAPESAERALATAVGSEGGGGGEGAVRRRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRCARKLEDAHGHLVTALAMHKTSPIVVSGGVDGELHVWEL----SLTMGTWGGRGGGGERERWARLEHYLHWFWVVFFGVIFVHMSRI 467
BLAST of mRNA_C-linearis_contig102.770.1 vs. uniprot
Match: A0A6H5JKZ3_9PHAE (Ge1_WD40 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKZ3_9PHAE) HSP 1 Score: 376 bits (966), Expect = 1.540e-121 Identity = 280/312 (89.74%), Postives = 291/312 (93.27%), Query Frame = 2 Query: 236 MDLEARLDQAQEDLKSGMRPGREKGGAAGSERILPRAPAKAVLAGHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGADCLKTLRGHDHNVSCVAWVPPAGDXXXXXXXXXXXXXXXAATGYCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVVESVAFAPQSAERTLSTVGSADGEGAGRGRFIASGSRDKTVKLWNASVGQCLMSFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK 1171 M+LEARLDQAQ+DLKSG+RPGREKG A GS+R+LPRAPAK VL GHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGA+CLKTLRGHDHNVSCVAWVPPAGD XXXXXXXXXXXXX AATG+CTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ESVAFAP+SAERTL+T GRF+ASGSRDKTVKLWNASVG CLM+FSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK Sbjct: 1 MELEARLDQAQDDLKSGVRPGREKG-AGGSDRVLPRAPAKGVLTGHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGAECLKTLRGHDHNVSCVAWVPPAGDTXXXXXXXXXXXXXEAATGFCTRTLKGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESVAFAPESAERTLATA---------VGRFVASGSRDKTVKLWNASVGHCLMTFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVK 302
BLAST of mRNA_C-linearis_contig102.770.1 vs. uniprot
Match: A0A5D6Y4C8_9STRA (Lissencephaly-1 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4C8_9STRA) HSP 1 Score: 318 bits (816), Expect = 3.270e-97 Identity = 227/458 (49.56%), Postives = 287/458 (62.66%), Query Frame = 2 Query: 38 MVLTQKQRNDMHVGMLEYMMGQGGEFAEAAAAFAAAAGLEDSTGNEGFRGLLEKKWTSVVRLQRKVMDLEARLDQAQEDLK---SGMRPGREK-GGAAGSERILPRAPAKAVLAGHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGADCLKTLRGHDHNVSCVAWVPPAG--DXXXXXXXXXXXXXXXAATGYCTRTLKGD-SEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVVESVAFAPQSAE---------RTLSTVGSADGEG---AGRG-------------------RFIASGSRDKTVKLWNASVGQCLMSFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRSARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 1297 MVLT+KQR D+H +L+Y+ G G FA++AAAF AG+ S + GLLEKKWTSV+RLQRKVM+LE++L Q +E + G+ RE+ GGA LPRAP + L+GHR+PVT VA HP++SV AS SEDATVKVWD+E+GE ERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS G +CLKTLRGHDHNV V + PPA D ATGYC TL G S+WVR VA+SDDG HVVESVAFA A+ + L+ VG+ G G AG G +F+ SGSRD+TV+LW A G LM+F+ HENWVRCV HP G +V+S ++DR++R +D++TGR R L++AH HF+T+ +H + P++V+GG+D+ ++VWEC Sbjct: 1 MVLTEKQRQDLHQSVLDYLSGMGERFADSAAAFERDAGISKSADGK-HAGLLEKKWTSVIRLQRKVMELESKLQQLEESARLGGGGIVSRREQLGGARPRSEFLPRAPPQFALSGHRSPVTSVAFHPVFSVFASGSEDATVKVWDFESGEYERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTDGD--YECLKTLRGHDHNVCGVVFAPPAAGEDLLYSCSRDNTVKVWELATGYCVNTLNGGHSDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQAIREHEHVVESVAFARSGAQEQAVERAHAKKLAAVGAVLGNGDAAAGGGTGPHVAADVGDVGAGSRRVKFLVSGSRDRTVRLWEAFSGALLMNFASHENWVRCVRFHPCGKYVISVAEDRTLRVYDIETGRCVRTLDEAHAHFLTSADVHPSLPLIVTGGIDKVINVWEC 455
BLAST of mRNA_C-linearis_contig102.770.1 vs. uniprot
Match: A0A2D4CDK0_PYTIN (Lissencephaly-1 homolog n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDK0_PYTIN) HSP 1 Score: 305 bits (782), Expect = 2.480e-92 Identity = 214/449 (47.66%), Postives = 273/449 (60.80%), Query Frame = 2 Query: 38 MVLTQKQRNDMHVGMLEYMMGQGGEFAEAAAAFAAAAGLEDSTGNEGFRGLLEKKWTSVVRLQRKVMDLEARLDQAQEDLKSGMRPGREK--GGAAGSERILPRAPAKAVLAGHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGADCLKTLRGHDHNVSCVAWVP-PAGDXXXXXXXXXXXXXXXAATGYCTRTLK-GDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVVESVAFAPQSAE---------RTLSTVGSADGEGAGRG----------------RFIASGSRDKTVKLWNASVGQCLMSFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRSARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 1297 MVLT+KQR D+H ML+Y++ G FA+ AAAF AG+ S + +LEKKWTSV+RLQ+KVM+LE+++ Q +E K G R GG LPRAP K L+GHRNP+TCVA HP++SV S SEDAT+KVWD+ETGE ERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS G +CLKTLRGHDHNV +A+ P P D +TGYC T+ G ++WVR + +SDDG HVVESV FA A+ + L TV S E A G +F+ SGSRD+TV+LW A LMSFS HENWVRCV HP G + +S ++DR++R D++TGR R ++ AH HF+T+L +H + P++++GG+D+ ++VWEC Sbjct: 1 MVLTEKQRQDLHQSMLDYLVAMGDRFADTAAAFEREAGITQSHDGK-HADMLEKKWTSVLRLQKKVMELESKIKQLEESSKLGGIVSRRDVLGGGRSRAEFLPRAPCKYSLSGHRNPITCVAFHPVFSVFVSGSEDATIKVWDFETGEYERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDGD--YECLKTLRGHDHNVCGLAFSPLPDSDRLYSCSRDHTIKVWEISTGYCLHTMNNGHADWVRDICVSDDGLYLASCGNDRSILFWDLQHHRVLQSLREHEHVVESVVFAKSGAQEQAIEKFHAQKLVTVSSPSSETALNGSGSTTDAAHVASPRKIKFLLSGSRDRTVRLWEAFSATMLMSFSSHENWVRCVRFHPCGRYAVSVAEDRTIRVHDIETGRCVRTVDQAHEHFLTSLDIHASLPLMITGGIDKHINVWEC 446
BLAST of mRNA_C-linearis_contig102.770.1 vs. uniprot
Match: K3WAC5_GLOUD (Lissencephaly-1 homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAC5_GLOUD) HSP 1 Score: 301 bits (771), Expect = 1.730e-90 Identity = 219/467 (46.90%), Postives = 272/467 (58.24%), Query Frame = 2 Query: 38 MVLTQKQRNDMHVGMLEYMMGQGGEFAEAAAAFAAAAGLEDSTGNEGFRGLLEKKWTSVVRLQRKVMDLEARLDQAQEDLKSG----MRPGREKGGAAGSER--ILPRAPAKAVLAGHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGADCLKTLRGHDHNVSCVAWVPPAG--DXXXXXXXXXXXXXXXAATGYCTRTLKGD-SEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVVESVAFAPQSAERTL-------------STVGSADGEGAGRG-------------------------RFIASGSRDKTVKLWNASVGQCLMSFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRSARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 1297 MVLT+KQR D+H ML+Y+ G G FA+ AAAF AG+ S + GLLEKKWTSV+RLQRKVM+LE ++ +E K G R GG G R LPRAP K L GHR+PVTCVA HP++SV AS SEDATVKVWD+ETGE ERTL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G +CLKTLRGHDHNV V + P D +TGYC TL G S+WVR VA+SDDG HVVESV FA A+ + V +GE R +F+ SGSRD+TV+LW A G LM+F+ HENWVRCV HP G + +SA++D+++R +D++TGR R L++AH HF+T++ +H T P+++SG +D+ ++VWEC Sbjct: 1 MVLTEKQRQDLHQSMLDYLHGMGERFADTAAAFEREAGITKSADGK-HAGLLEKKWTSVIRLQRKVMELENKVQLLEETAKLGNGVVSRRDLLGGGIGGRPRSEFLPRAPPKYALTGHRSPVTCVAFHPVFSVFASGSEDATVKVWDFETGEYERTLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDGD--YECLKTLRGHDHNVCGVVFAPATAGEDLLYSCSRDHTIKVWEISTGYCVNTLNGGHSDWVRDVAVSDDGLYLATCGNDRSILLWDLQHMRVLQSIREHEHVVESVTFAKSGAQELAIEKAHAKKLVAAGAVVAIGNGEAVARSPEDALTTDMVVDVTNASTSSSVRRVKFLLSGSRDRTVRLWEAFSGTLLMNFASHENWVRCVRFHPCGKYAISAAEDKTIRVYDLETGRCVRTLDEAHSHFLTSVDVHPTLPLMISGSIDKLINVWEC 464
BLAST of mRNA_C-linearis_contig102.770.1 vs. uniprot
Match: A0A484E3V1_BRELC (Lissencephaly-1 homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E3V1_BRELC) HSP 1 Score: 300 bits (767), Expect = 5.440e-90 Identity = 218/460 (47.39%), Postives = 276/460 (60.00%), Query Frame = 2 Query: 38 MVLTQKQRNDMHVGMLEYMMGQGGEFAEAAAAFAAAAGLEDSTGNEGFRGLLEKKWTSVVRLQRKVMDLEARLDQAQEDLK-SGMRPGREKGGAAGSERILPRAPAKAVLAGHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGADCLKTLRGHDHNVSCVAWVPP-AGDXXXXXXXXXXXXXXXAATGYCTRTLK-GDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVVESVAFAPQSAERTLSTV---------------------------GSADGEGAG----------RGRFIASGSRDKTVKLWNASVGQCLMSFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRSARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 1297 MVLT KQR+D+H ML+Y++G G FA AAAAF A + S+ + GLLEKKWTSV+RLQRKVM+LE +L Q +E+ K G+ R+ GA LPRAPAK L GHR+P+TCV HP++SV+ S SEDA+VKVWD+ETGE ERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS G +CL+TLRGHDHNV + + P A D +TGYC TL G ++WVR VA+S DG HVVESV FA E+ + + S GE +G R + + SGSRD+TV+LW A G L+ F+ HENWVR V HPSG + LSA +D+++R FD+++GR R L++AH HFVT L +H + P++VSGG+D+ ++VWEC Sbjct: 1 MVLTDKQRHDLHQAMLDYLVGMGERFAAAAAAFENEADISKSSDGK-HAGLLEKKWTSVIRLQRKVMELETKLAQFEENAKVGGVLSRRDMLGARQRTEFLPRAPAKLSLTGHRSPITCVLFHPVFSVLVSGSEDASVKVWDFETGEYERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDGD--YECLRTLRGHDHNVCGIVFGPDLASDRLYSCSRDNTIKVWELSTGYCVNTLNTGHTDWVRDVAVSHDGLYLASCGNDRSILFWDLPHMRILQSIREHEHVVESVVFAKAGQEQVIEKIYAKKLAATGHFSPANGSSFAEVNNRVTDSTAGEPSGVAVVSKPTIRRMKILLSGSRDRTVRLWEAFTGTQLIVFASHENWVREVRFHPSGKYALSAGEDKTIRVFDIESGRCVRTLDEAHSHFVTCLDVHPSLPLIVSGGIDKIINVWEC 457
BLAST of mRNA_C-linearis_contig102.770.1 vs. uniprot
Match: A0A8K1CCN7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCN7_PYTOL) HSP 1 Score: 297 bits (761), Expect = 1.630e-89 Identity = 227/429 (52.91%), Postives = 282/429 (65.73%), Query Frame = 2 Query: 80 MLEYMMGQGGEFAEAAAAFAAAAGLEDSTGNEGFRGLLEKKWTSVVRLQRKVMDLEARLDQAQEDLKSGMRPGREK--GGAAGSERILPRAPAKAVLAGHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGADCLKTLRGHDHNVSCVAWVPPA-GDXXXXXXXXXXXXXXXAATGYCTRTLK-GDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVVESVAFA---PQS-------AERTLSTVGS----ADGE-----GAGRGRFIASGSRDKTVKLWNASVGQCLMSFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRSARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 1297 ML+YM+ G FAE AAAF AG+ S + GLLEKKWTSV+RLQRKVM+LE ++ Q +E K G R GG LPR P K L GHRNP+TCVA HP++SV+ SSSEDAT+KVWD+ETGE ERT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS G +CLKTLRGHDHNV + + P A DXXXXXXXXXXXXXXX +TGYC T+ G ++WVR + +SDDG HVVESV FA PQ A + S VG+ A+G G + +FI SGSRD+TV+LW A G LM+F+ HENWVRCV HP G +V+S ++D+++R FD++TGR R +++AHGHF+T+L +H T P++V+G +D+ ++VWEC Sbjct: 1 MLDYMIAMGDRFAETAAAFEREAGVTRSPDAKQ-AGLLEKKWTSVIRLQRKVMELEGKVKQLEESSKLGGIVSRRDVVGGGRSKAEFLPRGPPKYSLTGHRNPITCVAFHPVFSVIVSSSEDATIKVWDFETGEFERTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDGE--YECLKTLRGHDHNVCGLVFAPSAESDXXXXXXXXXXXXXXXISTGYCLHTMSNGHADWVRNITVSDDGLYLASCGNDRAILFWDLQHHRVLQALREHDHVVESVVFAKSGPQEQAIEKFLAPKLASVVGAPLDAANGSAELSAGPRKVKFILSGSRDRTVRLWEAFSGTMLMNFASHENWVRCVRFHPCGKYVVSVAEDKTIRVFDIETGRCVRTVDEAHGHFLTSLDVHPTLPLMVTGSIDKLINVWEC 426
BLAST of mRNA_C-linearis_contig102.770.1 vs. uniprot
Match: F0WCC4_9STRA (Lissencephaly-1 homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WCC4_9STRA) HSP 1 Score: 293 bits (751), Expect = 1.030e-87 Identity = 218/455 (47.91%), Postives = 282/455 (61.98%), Query Frame = 2 Query: 38 MVLTQKQRNDMHVGMLEYMMGQGGEFAEAAAAFAAAAGLEDSTGNEGFRGLLEKKWTSVVRLQRKVMDLEARLDQAQEDLKSGMRPGREKGGAAGSERILPRAPAKAVLAGHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGADCLKTLRGHDHNVSCVAWVPPAGDXXXXXXXXXXXXXXXAATGYCTRTL-KGDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVVESVAFAPQSAE---------RTLSTVGSAD-------------------------GEGAGRGRFIASGSRDKTVKLWNASVGQCLMSFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRSARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 1297 MVLT KQ+ D+H +L+Y+ G G F E +AAF A + S + GLLEKKWTSV+RLQ+KVM+LEA++ Q +E K G R LPRAP K L+GHR+P+TCV HP++SV+ S SEDAT+KVWD+E GE ERTL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX G G +C++TLRGHDHNVSCV + + +TGYCT+TL G ++W+R +AL+DD XXXXXXXXXXX HV+E + F+ + E R ++ G A+ G+ + R++ SGSRD+TV+LW A G LM+F+ HENWVR V HPSG +V+SA++D+SVR FD++TGR R L DAH HFVT L +H T P+++SGG+D+ ++VWEC Sbjct: 1 MVLTDKQQQDLHQSILDYLNGMGERFTETSAAFEREANIHRSADGK-HAGLLEKKWTSVLRLQKKVMELEAKVHQMEEAAKLGNVISRRDVVGPHRSACLPRAPRKFELSGHRSPITCVIFHPVFSVLVSGSEDATLKVWDFEMGEYERTLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GVEGNYECIRTLRGHDHNVSCVIFDTIQNERIITCSRDQQIKLWDISTGYCTKTLVNGHTDWIRDIALTDDSQLLASXXXXXXXXXXXMQTFRPIQTIREHEHVIECITFSKTAVEHRGTEKAVSRKVAPAGLANSPAAMMILANSENRDTAENGVHLDHGKAPKKLRYLLSGSRDRTVRLWEALSGVLLMNFTQHENWVRMVRFHPSGKYVISAAEDKSVRVFDIETGRCVRTLLDAHTHFVTCLDIHPTLPLLISGGIDKVINVWEC 452
BLAST of mRNA_C-linearis_contig102.770.1 vs. uniprot
Match: H3H2U3_PHYRM (Lissencephaly-1 homolog n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3H2U3_PHYRM) HSP 1 Score: 285 bits (729), Expect = 2.120e-84 Identity = 219/463 (47.30%), Postives = 268/463 (57.88%), Query Frame = 2 Query: 38 MVLTQKQRNDMHVGMLEYMMGQGGEFAEAAAAFAAAAGLEDSTGNEGFRGLLEKKWTSVVRLQRKVMDLEARLDQAQEDLK-SGMRPGREKGGAAGSERILPRAPAKAVLAGHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGADCLKTLRGHDHNVSCVAWVPP-AGDXXXXXXXXXXXXXXXAATGYCTRTLK-GDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVVESVAFA-------------------------------PQSA--ERTLSTVGSADGEGAG-------RGRFIASGSRDKTVKLWNASVGQCLMSFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRSARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 1297 MVLT KQR D+H M++Y++G G FA++AAA AG+ S+ + GLLEKKWTSV+RLQRKVM+LE +L Q +E+ K G+ R+ GA LPRAPAK L GHR+P+TCVA HP++SV+ S+SEDA VKVWD+ETGE ERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS G +CL+TLRGHDHNV + + P A D +TGYC TL G S+WVR VA+SDDG HVVESV FA P+S + T ST G G A R +F+ SGSRD+TV+LW A G LM F+ HENWVR V HPSG + LSA +D+++R FD++TGR R L+DAH HFVT L + ++VWEC Sbjct: 1 MVLTDKQRQDLHQAMIDYLVGMGERFADSAAALEKEAGVTKSSDGK-HAGLLEKKWTSVIRLQRKVMELETKLAQLEENTKLGGVLSRRDVLGARQRSEFLPRAPAKFSLTGHRSPITCVAFHPVFSVLVSASEDAAVKVWDFETGEYERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDGD--YECLRTLRGHDHNVCGIVFGPDLASDRLYSCSRDNTIKVWELSTGYCVNTLNAGHSDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQSIREHEHVVESVVFAKTGIQEQVIERAHAKKLATTGALTPSNGSSLPESNNHDMTSSTAGEPTGAVAATTVPTVRRMKFLLSGSRDRTVRLWEAFSGMQLMLFASHENWVREVRFHPSGKYALSAGEDKTIRVFDIETGRCVRTLDDAHSHFVTCLDVXXXXXXXXXXXXXXIINVWEC 460
BLAST of mRNA_C-linearis_contig102.770.1 vs. uniprot
Match: A0A329RP37_9STRA (Lissencephaly-1 homolog n=16 Tax=Peronosporaceae TaxID=4777 RepID=A0A329RP37_9STRA) HSP 1 Score: 283 bits (724), Expect = 1.100e-83 Identity = 216/462 (46.75%), Postives = 265/462 (57.36%), Query Frame = 2 Query: 38 MVLTQKQRNDMHVGMLEYMMGQGGEFAEAAAAFAAAAGLEDSTGNEGFRGLLEKKWTSVVRLQRKVMDLEARLDQAQEDLK-SGMRPGREKGGAAGSERILPRAPAKAVLAGHRNPVTCVALHPLYSVVASSSEDATVKVWDYETGECERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEGGAGGADCLKTLRGHDHNVSCVAWVPP-AGDXXXXXXXXXXXXXXXAATGYCTRTLK-GDSEWVRRVALSDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVVESVAFAPQSAERTLSTV----------------------------GSADGEGAG-----------RGRFIASGSRDKTVKLWNASVGQCLMSFSVHENWVRCVLVHPSGAFVLSASDDRSVRAFDVKTGRSARKLEDAHGHFVTALAMHKTSPIVVSGGVDRELHVWEC 1297 MVLT KQR D+H ML+Y++G G FA+ AAAF A + S+ + GLLEKKWTSV+RLQRKVM+LE +L Q +E+ K G+ R+ GA LPRAPAK L GHR+P+TCVA HP++SV+ S SEDA+VKVWD+ETGE ERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS G +CL+TLRGHDHNV + + P A D +TGYC TL G ++WVR VA+SDDG HVVESV FA E+ + + S+ GE G R +F+ SGSRD+TV+LW A G LM F+ HENWVR V HPSG + LSA +D+++R FDV TGR R L++AH HFVT L + ++VWEC Sbjct: 1 MVLTDKQRQDLHQAMLDYLVGMGERFADTAAAFEKEADVTKSSDGK-HAGLLEKKWTSVIRLQRKVMELETKLAQLEENAKLGGVLSRRDVLGARQRTEFLPRAPAKFSLTGHRSPITCVAFHPVFSVLVSGSEDASVKVWDFETGEYERTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDGD--YECLRTLRGHDHNVCGIVFGPDLASDRLYSCSRDNTIKVWELSTGYCVNTLNAGHTDWVRDVAVSDDGLYLASCGNDRSILFWDLQHMRVLQSIREHEHVVESVVFAKTGQEQVIEKIHSKKLAATGALAPANGSVSPKSNNHDMTASSAGEPTGAVAVASVPTVRRMKFLLSGSRDRTVRLWEAFSGMQLMMFASHENWVREVRFHPSGKYALSAGEDKTIRVFDVDTGRCVRTLDEAHSHFVTCLDVXXXXXXXXXXXXXXIINVWEC 459 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig102.770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig102.770.1 >prot_C-linearis_contig102.770.1 ID=prot_C-linearis_contig102.770.1|Name=mRNA_C-linearis_contig102.770.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=422bp MVLTQKQRNDMHVGMLEYMMGQGGEFAEAAAAFAAAAGLEDSTGNEGFRGback to top mRNA from alignment at C-linearis_contig102:163745..171465- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig102.770.1 ID=mRNA_C-linearis_contig102.770.1|Name=mRNA_C-linearis_contig102.770.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7721bp|location=Sequence derived from alignment at C-linearis_contig102:163745..171465- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig102:163745..171465- >mRNA_C-linearis_contig102.770.1 ID=mRNA_C-linearis_contig102.770.1|Name=mRNA_C-linearis_contig102.770.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2532bp|location=Sequence derived from alignment at C-linearis_contig102:163745..171465- (Chordaria linearis ClinC8C monoicous)back to top |