mRNA_C-linearis_contig101.757.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.757.1 vs. uniprot
Match: D8LE34_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE34_ECTSI) HSP 1 Score: 533 bits (1374), Expect = 3.670e-178 Identity = 392/671 (58.42%), Postives = 436/671 (64.98%), Query Frame = 1 Query: 391 EMSPDDVGSSSTDSFDSEGLCQPGQENTGRWTSDEHRLFLKGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASGTSHLDPATLMSTMDAGKPRPASVARNLRSSTIPNNAVDSEGRLMSLRNRRNRGRHSRHGDEQDGIDSSSDGSNGGXXXXXXXXXXXXXXSGDGDAR------------------------YRKKP---------GMLMMVRQEAPKFAVDGGNSS--GARV--------LNEVRRLSGHCYTLGVSRTEQGEAISSMGAGTGSGWGNRQLMPGSKSNRPSPTKSSKAITTAAGXXXXDARALAWEXXXXXXXXXXXXXXXXXXXXXNAT-GTKRNRSESISSSS---SLGDAIKNLKRTGGS-QGTRISPTSVSDIN-FMSFPVPHTEHSDVAMHHLPQQLAPSWCTKPQDTWMAGAGFDIGA-DSDDAGPFRWFIDERSLSAPGAFFQPPVETWSGSDTTDASVAAGATSGGEGSTVDGDRRTIVPE-VPVNTNKIDMSPVIGNTCDRP-NSEDVTNKRRSPMPIDSQAYVTVSDAAIASEVTRHVEADNAT--------------------GGDGLDITSGLWLDHPQEA-----SPLMYGLGLSAPPVAG----------LGEGLSLPSLDEDEVLGFLACAENR 2142
++ DD +SS+D+ D+EG+CQPG ENTGRWTSDEHRLFL+GLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASGTSHLDPATLMSTMDAGKPRPASV+RNLRSST+ N+ +SEGRLMSLR RR XXXXXXXXXXXXXX YR+ +EAP F V GGNS GA L+E + GH + G + S + GT W R+ KS+RPSPTK+SKA A XXXX ARALAWEXXXXXXXXXXXXXXXXXXXXX GTKR+RSES+SSSS SLG IK+LKRTGGS Q TRISPTSV+D+N FMSFPVP TE SD+AMHHLPQQLAPSWCTKPQDTWMAGAG D+G ++DDAGPFRWFIDERSLSAPGAFFQPPVETWSGSDTTD S +AG+ RT+VPE +P NTNK+DMSP T D N EDV+ + M + V +SDAA+ASEV+RHVEAD+AT GG LDITSGLWLDHPQEA SPLMYGLGLSAP G GLSLPSLDE+EVLGFLACAE
Sbjct: 4 QLQVDDGAASSSDNLDNEGVCQPGNENTGRWTSDEHRLFLRGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASGTSHLDPATLMSTMDAGKPRPASVSRNLRSSTMANSPAESEGRLMSLRKRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGHRGVYRETALGATXXXXXXXXXRQAEEAPAFTVGGGNSGAHGAEFDEEEAEEELDESVDVEGH----NSNNKNVGISSSLLHGGTAGTWSKRRPA---KSHRPSPTKASKAAAIAXXXXXXXARALAWEXXXXXXXXXXXXXXXXXXXXXXXXXGTKRHRSESVSSSSNDASLGKTIKSLKRTGGSSQTTRISPTSVADVNSFMSFPVPQTERSDMAMHHLPQQLAPSWCTKPQDTWMAGAGLDMGGLEADDAGPFRWFIDERSLSAPGAFFQPPVETWSGSDTTDVSTSAGSDHQ--------HHRTVVPEHLPSNTNKVDMSPGGVLTSDNTHNQEDVSIAKHRGM---MEPIVPISDAAMASEVSRHVEADSATACAAAXXXXXXXXXXXXXXDGGHSLDITSGLWLDHPQEAHEAVASPLMYGLGLSAPANTGGAXXXXXXXXXXGGLSLPSLDEEEVLGFLACAEEN 656
BLAST of mRNA_C-linearis_contig101.757.1 vs. uniprot
Match: K0S452_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S452_THAOC) HSP 1 Score: 105 bits (263), Expect = 9.250e-21 Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 1 Query: 466 ENTGRWTSDEHRLFLKGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASGTSHLDPATLMSTMDAGKPRPAS 705
ENTGRWT++EHRLFL+GLE HGKGWK+IATLI++RTVVQIRTHAQKYFQKL+KA+ SG A +ST +A P S
Sbjct: 308 ENTGRWTAEEHRLFLQGLERHGKGWKKIATLIKSRTVVQIRTHAQKYFQKLAKARQSGAVDGHAALGVSTAEAHDGPPGS 387
BLAST of mRNA_C-linearis_contig101.757.1 vs. uniprot
Match: A0A7S0GFF0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GFF0_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.790e-20 Identity = 49/60 (81.67%), Postives = 56/60 (93.33%), Query Frame = 1 Query: 460 GQENTGRWTSDEHRLFLKGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASG 639
G ENTGRWT+DEHRLFL GLELHGKGWK+IA LI++RTVVQIRTHAQKYFQKL+KA+ +G
Sbjct: 40 GSENTGRWTADEHRLFLHGLELHGKGWKKIACLIKSRTVVQIRTHAQKYFQKLAKARQNG 99
BLAST of mRNA_C-linearis_contig101.757.1 vs. uniprot
Match: A0A6U4FI15_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FI15_9STRA) HSP 1 Score: 105 bits (262), Expect = 1.930e-20 Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 1 Query: 460 GQENTGRWTSDEHRLFLKGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASG 639
G+ENTGRW+ +EHRLFLKGLE+HGKGWK+IA LI+TRTVVQIRTHAQKYFQKL+KA+ G
Sbjct: 27 GKENTGRWSYEEHRLFLKGLEMHGKGWKKIAELIKTRTVVQIRTHAQKYFQKLAKAKQGG 86
BLAST of mRNA_C-linearis_contig101.757.1 vs. uniprot
Match: A0A8J9S9N3_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S9N3_PHATR) HSP 1 Score: 102 bits (254), Expect = 2.390e-20 Identity = 46/58 (79.31%), Postives = 56/58 (96.55%), Query Frame = 1 Query: 466 ENTGRWTSDEHRLFLKGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASG 639
ENTGRWT++EHRLFL+GLE HGKGWK+IA+LI++RTVVQIRTHAQKYFQKL+KA+ +G
Sbjct: 115 ENTGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAKARQNG 172
BLAST of mRNA_C-linearis_contig101.757.1 vs. uniprot
Match: A0A6H5L4H1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H1_9PHAE) HSP 1 Score: 107 bits (268), Expect = 2.630e-20 Identity = 49/61 (80.33%), Postives = 58/61 (95.08%), Query Frame = 1 Query: 457 PGQENTGRWTSDEHRLFLKGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASG 639
P +ENTGRWT DEHRLFL+GLELHGKGWK+IA+LI+TRTVVQIRTHAQKYFQK++KA+ +G
Sbjct: 569 PVKENTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNG 629
BLAST of mRNA_C-linearis_contig101.757.1 vs. uniprot
Match: D7G656_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G656_ECTSI) HSP 1 Score: 104 bits (260), Expect = 2.670e-20 Identity = 47/58 (81.03%), Postives = 56/58 (96.55%), Query Frame = 1 Query: 466 ENTGRWTSDEHRLFLKGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASG 639
+NTGRWT DEHRLFL+GLELHGKGWK+IA+LI+TRTVVQIRTHAQKYFQK++KA+ +G
Sbjct: 4 KNTGRWTYDEHRLFLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKIAKAKQNG 61
BLAST of mRNA_C-linearis_contig101.757.1 vs. uniprot
Match: A0A1E7FR15_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FR15_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 3.030e-20 Identity = 43/54 (79.63%), Postives = 51/54 (94.44%), Query Frame = 1 Query: 478 RWTSDEHRLFLKGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASG 639
RWTS+EH LFL+GLELHGKGWK+IA LI++RTVVQIRTHAQKYFQKL+KA+ +G
Sbjct: 1 RWTSEEHNLFLQGLELHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAKAKQNG 54
BLAST of mRNA_C-linearis_contig101.757.1 vs. uniprot
Match: W7TWM0_9STRA (SANT/Myb domain protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TWM0_9STRA) HSP 1 Score: 106 bits (264), Expect = 3.650e-20 Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = 1 Query: 448 LCQPGQENTGRWTSDEHRLFLKGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASG 639
L + G+ENTGRWT +EH LFLKGLE+HGKGWK+IA LI+TRTVVQIRTHAQKYFQKL+KA+ +G
Sbjct: 92 LGETGRENTGRWTCEEHVLFLKGLEMHGKGWKKIAKLIKTRTVVQIRTHAQKYFQKLAKAKKNG 155
BLAST of mRNA_C-linearis_contig101.757.1 vs. uniprot
Match: A0A7S2FCS8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FCS8_9STRA) HSP 1 Score: 100 bits (250), Expect = 3.840e-20 Identity = 45/61 (73.77%), Postives = 54/61 (88.52%), Query Frame = 1 Query: 457 PGQENTGRWTSDEHRLFLKGLELHGKGWKQIATLIQTRTVVQIRTHAQKYFQKLSKAQASG 639
P +ENTGRWT +EH +FL GL++HGKGWK IA +I+TRTVVQIRTHAQKYFQKL+KAQ +G
Sbjct: 119 PNKENTGRWTIEEHTMFLDGLKVHGKGWKDIAKMIKTRTVVQIRTHAQKYFQKLAKAQQNG 179 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.757.1 >prot_C-linearis_contig101.757.1 ID=prot_C-linearis_contig101.757.1|Name=mRNA_C-linearis_contig101.757.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=722bp AVQVGDYPCRGCLSVAGTFVLFSLALALNLFRKHRRKRGTHAYPSQHTHSback to top mRNA from alignment at C-linearis_contig101:542208..549878- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.757.1 ID=mRNA_C-linearis_contig101.757.1|Name=mRNA_C-linearis_contig101.757.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7671bp|location=Sequence derived from alignment at C-linearis_contig101:542208..549878- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:542208..549878- >mRNA_C-linearis_contig101.757.1 ID=mRNA_C-linearis_contig101.757.1|Name=mRNA_C-linearis_contig101.757.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4332bp|location=Sequence derived from alignment at C-linearis_contig101:542208..549878- (Chordaria linearis ClinC8C monoicous)back to top |