mRNA_C-linearis_contig101.747.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig101.747.1 vs. uniprot
Match: A0A6H5KAS5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS5_9PHAE) HSP 1 Score: 231 bits (588), Expect = 5.650e-69 Identity = 134/240 (55.83%), Postives = 161/240 (67.08%), Query Frame = 1 Query: 19 WLSGYIKHPKANKKAPDWVAEAKFADAWRPSHFSGSVVPSKEDAKRRCQVQHVPPREKRPRDC-HTAAAANHAPRAK-RAARDGEGRPKGSFGRKRMRELLQRCRAAVDAGQLTSERFGVQDLSRAMLEASQEVARYEEHWRPAYLKRLGNRGVRTK*ALRKLAKHRSQLEKASSASAACKAGWERGVEYFHAVTKECQAAVATASAGIEEPIDVSHAQAGKMMVKALALKGVYKKLLKG 732 W S YIK PK DW AE +FA WRPS SG+V + A + + PPREKRPRDC H AA+ AP AK AR G GRPKGS+G KR+RE Q+ ++ GQ +DL ML+A +EV +++E W PA+LKR NRGV K ALRKLAKHRSQLEKA++ASAAC++GWERG +YF AV KECQ+AVA SAG+ E + VSHAQAG + KALALK VY KLLKG Sbjct: 59 WCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFSSGNVPHTDASAG---EAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKG 295
BLAST of mRNA_C-linearis_contig101.747.1 vs. uniprot
Match: A0A6H5JU25_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU25_9PHAE) HSP 1 Score: 231 bits (588), Expect = 4.280e-67 Identity = 134/240 (55.83%), Postives = 161/240 (67.08%), Query Frame = 1 Query: 19 WLSGYIKHPKANKKAPDWVAEAKFADAWRPSHFSGSVVPSKEDAKRRCQVQHVPPREKRPRDC-HTAAAANHAPRAK-RAARDGEGRPKGSFGRKRMRELLQRCRAAVDAGQLTSERFGVQDLSRAMLEASQEVARYEEHWRPAYLKRLGNRGVRTK*ALRKLAKHRSQLEKASSASAACKAGWERGVEYFHAVTKECQAAVATASAGIEEPIDVSHAQAGKMMVKALALKGVYKKLLKG 732 W S YIK PK DW AE +FA WRPS SG+V + A + + PPREKRPRDC H AA+ AP AK AR G GRPKGS+G KR+RE Q+ ++ GQ +DL ML+A +EV +++E W PA+LKR NRGV K ALRKLAKHRSQLEKA++ASAAC++GWERG +YF AV KECQ+AVA SAG+ E + VSHAQAG + KALALK VY KLLKG Sbjct: 59 WCSPYIKCPKGRNTGRDWAAEDRFAATWRPSFSSGNVPHTDASAG---EAEAAPPREKRPRDCRHAAASTEDAPAAKVGGARPGSGRPKGSYGWKRVREAAQQLNDYIERGQPHCALIASRDLPGDMLDAVKEVHQHQEVWGPAFLKRQSNRGVGRKEALRKLAKHRSQLEKAAAASAACRSGWERGQDYFRAVIKECQSAVAATSAGLNESVLVSHAQAGSLQFKALALKAVYHKLLKG 295
BLAST of mRNA_C-linearis_contig101.747.1 vs. uniprot
Match: A0A6H5JXV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV4_9PHAE) HSP 1 Score: 200 bits (508), Expect = 2.830e-60 Identity = 112/202 (55.45%), Postives = 137/202 (67.82%), Query Frame = 1 Query: 19 WLSGYIKHPKANKKAPDWVAEAKFADAWRPSHFSGSVVPSKEDAKRRCQVQHVPPREKRPRDCHTAAAAN-----HAPRAKRAARDGEGRPKGSFGRKRMRELLQRCRAAVDAGQLTSERFGVQDLSRAMLEASQEVARYEEHWRPAYLKRLGNRGVRTK*ALRKLAKHRSQLEKASSASAACKAGWERGVEYFHAVTKECQ 609 W + IK+PK+NKKA DW AEA A WRPSH SK+ +K V+ PPR KRPRDC + H P A+RAA G GRPKGSFGRKR+ E++ +A V+ GQL V+DLS AML+A+ EV ++E+ WRPA+LKR +RG+R ALRKLAKHRSQLEKA+ A+ ACKAGWE+GVEYF AV KECQ Sbjct: 51 WRTDCIKYPKSNKKARDWAAEAALAAVWRPSHCDRYATLSKDTSK----VEPAPPRTKRPRDCCQQDLSCGRDHCHTPPAQRAAPAGAGRPKGSFGRKRLHEMMATYKARVEQGQLEFADMHVRDLSTAMLDAAVEVDKHEDVWRPAFLKRQSDRGMRRAEALRKLAKHRSQLEKAALAATACKAGWEKGVEYFRAVVKECQ 248
BLAST of mRNA_C-linearis_contig101.747.1 vs. uniprot
Match: A0A6H5K534_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K534_9PHAE) HSP 1 Score: 179 bits (455), Expect = 4.750e-51 Identity = 111/240 (46.25%), Postives = 143/240 (59.58%), Query Frame = 1 Query: 19 WLSGYIKHPKANKKAPDWVAEAKFADAWRPSHFSGSVVPSKEDAKRRCQVQHVPPREKRPRDC-HTAAAANHAPRAKRA-ARDGEGRPKGSFGRKRMRELLQRCRAAVDAGQLTSERFGVQDLSRAMLEASQEVARYEEHWRPAYLKRLGNRGVRTK*ALRKLAKHRSQLEKASSASAACKAGWERGVEYFHAVTKECQAAVATASAGIEEPIDVSHAQAGKMMVKALALKGVYKKLLKG 732 W S Y K PK DW AE ++A WRP SG+V + D + R + + PPREK DC H A + AP KR AR G GRPKGS+GRKR+R+ Q+ ++ G+L + +DL AM +A +E + EE RPA+LKR NRG LEKA++ASAAC++GWERG +YF V KECQ+AVA SAG+ E + VSH QAG + KALAL G+Y KLL+G Sbjct: 68 WCSPYNKFPKGRTTGRDWAAEDRWAATWRPFFCSGNVPHN--DVRAR-EAEAAPPREKWQPDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRKRLRQAAQQLNDDLERGKLQCAQMVSRDLPGAMSDAVKEAHQQEEACRPAFLKRQSNRG----------------LEKAAAASAACRSGWERGQDYFRVVIKECQSAVAVTSAGLNESVLVSHTQAGSLQFKALALNGLYHKLLRG 288
BLAST of mRNA_C-linearis_contig101.747.1 vs. uniprot
Match: A0A6H5JUL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUL0_9PHAE) HSP 1 Score: 177 bits (449), Expect = 7.050e-48 Identity = 102/192 (53.12%), Postives = 133/192 (69.27%), Query Frame = 1 Query: 163 QVQHVPPREKRPRDC-HTAAAANHAPRAKRA-ARDGEGRPKGSFGRKRMRELLQRCRAAVDAGQLTSERFGVQDLSRAMLEASQEVARYEEHWRPAYLKRLGNRGVRTK*ALRKLAKHRSQLEKASSASAACKAGWERGVEYFHAVTKECQAAVATASAGIEEPIDVSHAQAGKMMVKALALKGVYKKLLKG 732 + + PPREKRPRDC H A + AP KR AR G GRPKGS+GR R+R+ Q+ ++ GQL + +DL AML+A +E + E +RPA+LKR NRG+ K ALRKLAKH+SQL+K ++ASAAC++GWERG AV KECQ+A+A SAG+ E + VSH+QAG + KALA KG+Y KLL+G Sbjct: 23 EAEVTPPREKRPRDCQHAAESTGDAPPGKRGGARPGAGRPKGSYGRNRLRQAAQQLNGYLERGQLQCAQMVSRDLPGAMLDAVKEAHQQEVVYRPAFLKRQSNRGLGRKEALRKLAKHQSQLQKEAAASAACRSGWERGQGCLRAVIKECQSAIAVTSAGLNESVLVSHSQAGSLQFKALARKGLYHKLLRG 214
BLAST of mRNA_C-linearis_contig101.747.1 vs. uniprot
Match: A0A6H5JPF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPF3_9PHAE) HSP 1 Score: 158 bits (400), Expect = 6.680e-45 Identity = 86/152 (56.58%), Postives = 103/152 (67.76%), Query Frame = 1 Query: 19 WLSGYIKHPKANKKAPDWVAEAKFADAWRPSHFSGSVVPSKEDAKRRCQVQHVPPREKRPRDCHTAAAANHAPRAKRAARDGEGRPKGSFGRKRMRELLQRCRAAVDAGQLTSERFGVQDLSRAMLEASQEVARYEEHWRPAYLKRLGNRGV 474 W S YIK+PK KA DW AEAK+A AWRPS SGS V S EDA+R PPR KRPRDC AA P KR +G GRPKG+FGRKR+R +L R R ++ GQ+T R V+DLS AML+A+QEV ++E+ WRPA+LKR NRGV Sbjct: 52 WRSDYIKYPKGQTKARDWSAEAKWAAAWRPSSSSGSAVLSTEDARRGSNDTPPPPRGKRPRDCQPAAEILTPP-PKRPGYEGAGRPKGTFGRKRLRAMLDRYRERIELGQVTCGRLEVRDLSSAMLDAAQEVEKHEQDWRPAFLKRQSNRGV 202
BLAST of mRNA_C-linearis_contig101.747.1 vs. uniprot
Match: D8LEU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU9_ECTSI) HSP 1 Score: 156 bits (395), Expect = 1.680e-44 Identity = 85/141 (60.28%), Postives = 109/141 (77.30%), Query Frame = 1 Query: 310 LLQRCRAAVDAGQLTSERFGVQDLSRAMLEASQEVARYEEHWRPAYLKRLGNRGVRTK*ALRKLAKHRSQLEKASSASAACKAGWERGVEYFHAVTKECQAAVATASAGIEEPIDVSHAQAGKMMVKALALKGVYKKLLKG 732 +++ +A V+ QL + V+ LS AM +A++EV R+E+ WR A+LKR NRGVR AL KLA HRSQLEKA+ ASAA KAGWE+GVEYF AV KECQ+AVA SAG++E +DVSHAQAGK+++KALAL+ VY KLL+G Sbjct: 1 MMETYQACVEQDQLAFAGWHVRALSSAMFDAAREVDRHEKDWRQAFLKRQSNRGVRRTEALGKLANHRSQLEKAALASAARKAGWEKGVEYFRAVVKECQSAVAATSAGLDETMDVSHAQAGKLLIKALALRAVYSKLLEG 141
BLAST of mRNA_C-linearis_contig101.747.1 vs. uniprot
Match: A0A6H5KLL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL8_9PHAE) HSP 1 Score: 157 bits (397), Expect = 5.050e-44 Identity = 97/197 (49.24%), Postives = 116/197 (58.88%), Query Frame = 1 Query: 19 WLSGYIKHPKANKKAPDWVAEAKFADAWRPSHFSGSVVPSKEDAKRRCQVQHVPPREKRPRDCHTAAAANHAPRAKRAARDGEGRPKGSFGRKRMRELLQRCRAAVDAGQLTSERFGVQDLSRAMLEASQEVARYEEHWRPAYLKRLGNRGVRTK*ALRKLAKHRSQLEKASSASAACKAGWERGVEYFHAVTKECQ 609 W + IK+PK+NKKA DW AEA A WRPSH SK+ +K PPR KRPRDC A +H S + E++ +A V+ GQL V+DLS AML A+ EV ++E WR A+LKR NRGVR ALRKLAKHRSQLEKA+ A+ ACKAGWE+GVEYF AV KECQ Sbjct: 38 WRTDCIKYPKSNKKARDWAAEAALAAVWRPSHCDRYATLSKDTSK----FGPAPPRFKRPRDC--CPATHHLQ---------------SVLHLQGHEMMATYKARVEQGQLEFADMHVRDLSTAMLNAAVEVDKHEYVWRTAFLKRQSNRGVRRAEALRKLAKHRSQLEKAALAATACKAGWEKGVEYFRAVVKECQ 213
BLAST of mRNA_C-linearis_contig101.747.1 vs. uniprot
Match: D7G1V5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V5_ECTSI) HSP 1 Score: 152 bits (384), Expect = 4.670e-43 Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = 1 Query: 391 MLEASQEVARYEEHWRPAYLKRLGNRGVRTK*ALRKLAKHRSQLEKASSASAACKAGWERGVEYFHAVTKECQAAVATASAGIEEPIDVSHAQAGKMMVKALALKGVYKKLLKG 732 ML ASQEV ++E+ W+PA+LKR NRGV K ALRKLAKHRSQLEKAS ASAACKAGWE+G+EYF AV KEC AVA SAG+EE IDVSHAQAGK++ +A AL+ VY KLL+G Sbjct: 1 MLAASQEVDKHEKDWQPAFLKRQSNRGVGRKEALRKLAKHRSQLEKASLASAACKAGWEKGLEYFRAVAKECNGAVAATSAGLEETIDVSHAQAGKLLTQAQALRAVYSKLLQG 114
BLAST of mRNA_C-linearis_contig101.747.1 vs. uniprot
Match: D7G0B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B2_ECTSI) HSP 1 Score: 152 bits (385), Expect = 4.760e-43 Identity = 81/139 (58.27%), Postives = 100/139 (71.94%), Query Frame = 1 Query: 19 WLSGYIKHPKANKKAPDWVAEAKFADAWRPSHFSGSVVPSKEDAKRRCQVQH-VPPREKRPRDCHTAAAANHAPRAKRAARDGEGRPKGSFGRKRMRELLQRCRAAVDAGQLTSERFGVQDLSRAMLEASQEVARYEEH 432 W S Y+ +P++NKKA DWVAE FA AWRPSH SGS V SK DA+ R + + +PPREKRPRDC +A H P AKRAAR+GEGRPKGSFGRKR+R LL + + V+ GQLT R ++DL AML ASQE + E++ Sbjct: 8 WYSEYMGYPESNKKARDWVAEENFAKAWRPSHSSGSAVLSKADARLRSEDKPALPPREKRPRDCQPTCSAIHTPPAKRAAREGEGRPKGSFGRKRLRALLHQYKVQVEQGQLTFARLQLRDLGSAMLAASQEADKPEKY 146 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.747.1 >prot_C-linearis_contig101.747.1 ID=prot_C-linearis_contig101.747.1|Name=mRNA_C-linearis_contig101.747.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=162bp WAHGRFWLSGYIKHPKANKKAPDWVAEAKFADAWRPSHFSGSVVPSKEDAback to top mRNA from alignment at C-linearis_contig101:395993..397155- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.747.1 ID=mRNA_C-linearis_contig101.747.1|Name=mRNA_C-linearis_contig101.747.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1163bp|location=Sequence derived from alignment at C-linearis_contig101:395993..397155- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:395993..397155- >mRNA_C-linearis_contig101.747.1 ID=mRNA_C-linearis_contig101.747.1|Name=mRNA_C-linearis_contig101.747.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at C-linearis_contig101:395993..397155- (Chordaria linearis ClinC8C monoicous)back to top |