mRNA_C-linearis_contig101.735.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.735.1 vs. uniprot
Match: D8LE12_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE12_ECTSI) HSP 1 Score: 342 bits (877), Expect = 1.440e-102 Identity = 322/691 (46.60%), Postives = 359/691 (51.95%), Query Frame = 1 Query: 1 MQPPSKHIELLRTIYSTLRRREPNGCDEKELVGRVFHASASASAERGVTGRGVDRGGGAHGGGXXXXXXXAXAVGEVGDASESHPFSKTKVRGAVTLLKFAQAVRVGRGDTAGQHVLYVAYELPTFSDFMARHNSHLVDMARELGVDMTPADWKSLLEADHSGARPLPAPSPTHRSEVSMETTLSRLATFKYALQSPLPGEKQFVCRPSPEHALWHGGQLVQLQPVQPXXXXXXXXXXXXXXXXLGPLQYIRQQPXXXXXXXXXXXXXXXXXXSSAAIGSAWGQ--AGTA--VAQRVQGVVPPPRGS-GLGLPAPAPLIRGQEQDQV-----------MVSALTGG---FRMALSPQGS-LDGSTFLGGHGWASPVRYGFDGDGFAQRPQQQQ-----------FSVHAALQ----HQGYGXXXXXXXXXX---GQVSYPHNHGLESFSGGSPRDGGGDQAGMSWAPGVINQGHHGGGGXXXXXXGIGVSRKMMEAAGRSAELLLLQQNRQYLGPNDTP-----TLFSWASYEPNPADNNESA--------------GGGRA----APASPGVMHAPVPMLRELRRQSSLPPLSGAQPMPM----PARMAQTPPFTFTLSSGRDFLSGGE-GGVPRVSDXXXXXXXXXXXXXXXXXA--AEAWERERSRFSVRGRRSPPRESRIAAIAFGA 1869
MQPP+KH ELLRTIY TLRRREPNGCDEKELVGRVFH+S SAS ER G G D G G X X GDA ESH FSKTKVRGAVTLLKFAQAVRVGRGDTAGQHVLYVAYELPTFSDFMARHNSHLVDMARELGVDMT DWKSLLE + + E L++ SP E+QF R S EHALWHGGQL+QLQP P XXXXXXXXXXXXX XXXXXXXXXXXXXXX +G WGQ AG + +QGV PP G P+P + +GQEQ + MVSA GG + M L +GS LDG GG G SP+ YG G+G P + HAA+ HQ YG GQV + +H AG+SWAPG++ QG HG G G + P +L S E PA + SA GGG A AP++ G+M APVP+ ELRRQSSLPPL G+ P P RMA TPP + G GGE G PR + XXXXXXXXXX AEAWERERSRF VRG R P ESRIAA+A A
Sbjct: 1 MQPPAKHNELLRTIYGTLRRREPNGCDEKELVGRVFHSSMSASVER--RGGGGDANAGTPAG---VSVAXXXXXXNTGDAPESHRFSKTKVRGAVTLLKFAQAVRVGRGDTAGQHVLYVAYELPTFSDFMARHNSHLVDMARELGVDMTAMDWKSLLETEQNSGGXXXXXXXXXXXTDQSEHGCRSLSSSPTVQSSPQDNEQQFAPRASSEHALWHGGQLLQLQPTHPRPPXXXXXXXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXXXXXVGGVWGQQVAGPQGLPPRGLQGVGPPQAGLVSPAAPSPTAMKQGQEQTLLSRPLPXXXXXAMVSAQVGGVGGYGMVLPLRGSPLDGFPSGGGRGSCSPLGYGLGGNGGNLTPXXXXXXXXXXLHLPVLAPHAAVAAVQPHQVYGFGHVQQGTVAVGGGQVHHRSSH-----------------AGLSWAPGLVGQGPHG---------GXXXXXXXXXXXXXXXXXXXXXXXXXXXGVTEPPPPLPSSLGQRESGEQVPAGTSSSAQSLPGDVSGPAGGVGGGGASFSGAPSAGGMMQAPVPVALELRRQSSLPPLLGSSPRPAFTGAGTRMAHTPPAITSGRLGFPPSGGGEKGSDPRATSDATGADAXXXXXXXXXXXXXAEAWERERSRFGVRGNRPSPVESRIAAVAIAA 656
BLAST of mRNA_C-linearis_contig101.735.1 vs. uniprot
Match: A0A6H5L5K1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5K1_9PHAE) HSP 1 Score: 347 bits (889), Expect = 8.650e-102 Identity = 335/716 (46.79%), Postives = 379/716 (52.93%), Query Frame = 1 Query: 1 MQPPSKHIELLRTIYSTLRRREPNGCDEKELVGRVFHASASASAERGVTGRGVDRGGGAHGGGXXXXXXXAXAVGEVGDASESHPFSKTKVRGAVTLLKFAQAVRVGRGDTAGQHVLYVAYELPTFSDFMARHNSHLVDMA--------------------RELGVDMTPADWKSLLEADHS----GARPLPAPSPTHRSEVSMETTLSR-------LATFKYALQSPLPGEKQFVCRPSPEHALWHGGQLVQLQPVQPXXXXXXXXXXXXXXXXLGPLQYIRQQPXXXXXXXXXXXXXXXXXXSSAAIGSAWGQAGTAVA----QRVQGVVPPPRGS-GLGLPAPAPLIRGQEQDQV-----------MVSALTGG---FRMALSPQGSLDGSTFLGG--HGWASPVRYGFDGDGFAQRPQQQQ----------------FSVHAALQ----HQGYGXXXXXXXXXX---GQVSYPHNHGLESFSGGSPRDGGGDQAGMSWAPGVINQGHHGGGGXXXXXXGIGVSRKMMEAAGRSAELLLLQQNR-QYLGPNDTPTLF---SWASYEPNPADNNE---SAGGGRA----APASPGVMHAPVPMLRELRRQSSLPPLSGAQPMPM----PARMAQTPPFTFTLSSGRDFLSGGE-GGVPRVSDXXXXXXXXXXXXXXXXX--AAEAWERERSRFSVRGRRSPPRESRIAAIAFGA 1869
MQPP+KH ELLRTIYSTLRRREPNGCDEKELV RVFHAS SASAER GRG D G G G GDA ESH FSKTKVRGAVTLLKFAQAVRVGRGDTAGQHVLYVAYELPTFSDFMARHNSHLVDMA RELGVDMT DWKSLLE + S G RP+P+ SPT +SE + ++ + L++ SP E QF R S EHALWHGGQL+QLQP P XXXXXXXXX XXXXXXXXXXXXXXXX +G WGQ + +QGV PP G P+P + +GQEQ + MVSA GG + M L GS + FLGG G SP+ YG G+G P + HAA+ HQ YG GQV +P +H AG+SWAPG++ QG HGG XXXXXX + LG ++ F + +S + P D N GGGRA AP++ G+M APVP+ E RRQSSLPPLSG+ P ARMA TP + G GGE G PR + XXXXXXXXXXXX AAEAWERERSRF VRG R P ESRIAA+A A
Sbjct: 260 MQPPAKHNELLRTIYSTLRRREPNGCDEKELVSRVFHASMSASAER--RGRGGDVNAGTPAG---VSVAGGGGEGTTGDAPESHRFSKTKVRGAVTLLKFAQAVRVGRGDTAGQHVLYVAYELPTFSDFMARHNSHLVDMAQGLAFTLSTRAHALGRDVSARELGVDMTAMDWKSLLETEQSSGGGGGRPIPSTSPTDQSEGTPQSPAGQNGHGCRSLSSSPTVQSSPRDNELQFAPRASSEHALWHGGQLLQLQPTHPRPTQQHQXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXVGGVWGQQAAGPQGLPLRGLQGVGPPQAGLVSPAAPSPTAMKQGQEQTLLSMPLSPPPPPAMVSAQVGGVGGYGMVLPLHGS-PLNRFLGGGSQGPCSPLGYGLGGNGGNLTPSXXXXXXXXXXXXXXLHLPVLAPHAAVAAVQPHQVYGFGHVQQGTAVVCGGQVHHPSSH-----------------AGLSWAPGLVGQGPHGGXXXXXXXXXXXXXXXXXXXXXXXEGVTEPPPPLPSALGQRESGEQFPVGTSSSAQSLPGDVNGPTGGVGGGRASFSGAPSAGGMMQAPVPVALEARRQSSLPPLSGSSLQPAFTISGARMAHTPSAIASRRLGFPPSGGGEKGSDPRAASGATGSXXXXXXXXXXXXXXAAEAWERERSRFGVRGNRPSPVESRIAAVAIAA 949 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.735.1 >prot_C-linearis_contig101.735.1 ID=prot_C-linearis_contig101.735.1|Name=mRNA_C-linearis_contig101.735.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=755bp MQPPSKHIELLRTIYSTLRRREPNGCDEKELVGRVFHASASASAERGVTGback to top mRNA from alignment at C-linearis_contig101:223895..228135+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.735.1 ID=mRNA_C-linearis_contig101.735.1|Name=mRNA_C-linearis_contig101.735.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4241bp|location=Sequence derived from alignment at C-linearis_contig101:223895..228135+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:223895..228135+ >mRNA_C-linearis_contig101.735.1 ID=mRNA_C-linearis_contig101.735.1|Name=mRNA_C-linearis_contig101.735.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4530bp|location=Sequence derived from alignment at C-linearis_contig101:223895..228135+ (Chordaria linearis ClinC8C monoicous)back to top |