mRNA_C-linearis_contig101.731.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.731.1 vs. uniprot
Match: D8LE09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE09_ECTSI) HSP 1 Score: 224 bits (571), Expect = 2.850e-65 Identity = 121/194 (62.37%), Postives = 134/194 (69.07%), Query Frame = 2 Query: 296 SRCADCGAPCADWASVAHGSFVCLNCAGQHRSLGMHVTFTRSLATDKWTEGGLRIMEAGGNGRLAEFVRRIGLYPWSTIQDKCEHPCLPLYRKHLAALADGEEPPPISREVLENAVLAASGE-EASD--LDDDKHDATSSSSLDSDEGGESTRVQLKNLIRNVSGGCGGIGHVLRRWSCNETAARRARAGGRGK 868
SRCADCGAPCADWASVAHGSFVCL CAGQ RSLGMHV FTRSL DKWT+ LR+MEAGGN RLAEF RR+GLYPWST+++K HPCLPLYRK LAALADGE+PPPISRE LE AVL ASGE EASD LK L ++V+GGC G+G RR C + RR AG G+
Sbjct: 363 SRCADCGAPCADWASVAHGSFVCLKCAGQQRSLGMHVIFTRSLVMDKWTDESLRLMEAGGNKRLAEFSRRMGLYPWSTVEEKYRHPCLPLYRKRLAALADGEKPPPISREALEQAVLEASGEGEASDDGXXXXXXXXXXXXXXXXXXXXXXAHDPLKLLFKSVTGGCDGVGQAFRRHFCQQALFRRTGAGAGGE 556
BLAST of mRNA_C-linearis_contig101.731.1 vs. uniprot
Match: A0A4D9D8B9_9STRA (Arf-GAP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8B9_9STRA) HSP 1 Score: 109 bits (273), Expect = 2.050e-23 Identity = 51/113 (45.13%), Postives = 76/113 (67.26%), Query Frame = 2 Query: 272 RVRSLSVCSRCADCGAPCADWASVAHGSFVCLNCAGQHRSLGMHVTFTRSLATDKWTEGGLRIMEAGGNGRLAEFVRRIGLYPWSTIQDKCEHPCLPLYRKHLAALADGEEPP 610
R+R L+ CADC AP WASV++GSF+CL+C+GQHR+LG+H++F RS+ D WT+ +R+ME GGN ++ F ++ G+ IQ K + LYR+ + A+ +G EPP
Sbjct: 12 RLRELAGNKVCADCPAPNPQWASVSYGSFICLDCSGQHRALGVHLSFVRSITMDSWTDKQIRLMEKGGNDQVISFFQQRGIAKSVPIQQKYKTAEAELYRERIKAVVEGREPP 124
BLAST of mRNA_C-linearis_contig101.731.1 vs. uniprot
Match: A0A6H5K0I1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I1_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 4.700e-22 Identity = 45/66 (68.18%), Postives = 52/66 (78.79%), Query Frame = 2 Query: 461 MEAGGNGRLAEFVRRIGLYPWSTIQDKCEHPCLPLYRKHLAALADGEEPPPISREVLENAVLAASG 658
MEAGGN RLAEF RR+G+Y WST+++K HPCLPLYR+ LAALA GE+PPPISRE LE A G
Sbjct: 1 MEAGGNKRLAEFSRRVGVYRWSTMEEKYRHPCLPLYRRRLAALAHGEKPPPISREALEQARAGGRG 66
BLAST of mRNA_C-linearis_contig101.731.1 vs. uniprot
Match: A0A7S0IGQ4_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IGQ4_MICPS) HSP 1 Score: 98.6 bits (244), Expect = 9.920e-22 Identity = 49/101 (48.51%), Postives = 63/101 (62.38%), Query Frame = 2 Query: 302 CADCGAPCADWASVAHGSFVCLNCAGQHRSLGMHVTFTRSLATDKWTEGGLRIMEAGGNGRLAEFVRRIGLYPWSTIQDKCEHPCLPLYRKHLAALADGEE 604
CADC A DWASV HG F+CLNC+G HRSLG+HV+F RS D WT+ R+ME GGN R +F + GL+ + ++K YR L A A+G+E
Sbjct: 40 CADCPARNPDWASVKHGIFICLNCSGIHRSLGVHVSFVRSATMDTWTKAEARMMEKGGNNRQRKFFDKYGLHNGTPHREKYNLQIAEAYRGKLKAEAEGKE 140
BLAST of mRNA_C-linearis_contig101.731.1 vs. uniprot
Match: C1E391_MICCC (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E391_MICCC) HSP 1 Score: 96.3 bits (238), Expect = 2.890e-21 Identity = 47/97 (48.45%), Postives = 59/97 (60.82%), Query Frame = 2 Query: 302 CADCGAPCADWASVAHGSFVCLNCAGQHRSLGMHVTFTRSLATDKWTEGGLRIMEAGGNGRLAEFVRRIGLYPWSTIQDKCEHPCLPLYRKHLAALA 592
CADC DWASV HG F+CLNC+G HRSLG+HV+F RS D WT+ R+ME GGN R +F + GL+ + ++K H YR L A A
Sbjct: 26 CADCPTRNPDWASVKHGIFICLNCSGIHRSLGVHVSFVRSATMDTWTQAEARMMEKGGNNRQRKFFDKYGLHNGTPHREKYNHQIAEAYRGKLKAEA 122
BLAST of mRNA_C-linearis_contig101.731.1 vs. uniprot
Match: D8LVQ4_BLAHO (Arf-GAP domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LVQ4_BLAHO) HSP 1 Score: 103 bits (256), Expect = 3.140e-21 Identity = 48/103 (46.60%), Postives = 69/103 (66.99%), Query Frame = 2 Query: 302 CADCGAPCADWASVAHGSFVCLNCAGQHRSLGMHVTFTRSLATDKWTEGGLRIMEAGGNGRLAEFVRRIGLYPWSTIQDKCEHPCLPLYRKHLAALADGEEPP 610
CADCGA WASV++G FVCL C+GQHR LG+H++F RS+ D WTE ++ M+ GGN ++ +F++ G+ S+I+ K LYR+ +AA +G EPP
Sbjct: 18 CADCGAARPQWASVSYGIFVCLECSGQHRGLGVHLSFVRSVQMDSWTEREIKAMQVGGNKQMNDFLQEHGVPKNSSIKKKYNSRAAALYREVIAAKIEGREPP 120
BLAST of mRNA_C-linearis_contig101.731.1 vs. uniprot
Match: A0A196SB56_BLAHN (ARF-GAP protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SB56_BLAHN) HSP 1 Score: 100 bits (249), Expect = 3.450e-21 Identity = 45/103 (43.69%), Postives = 64/103 (62.14%), Query Frame = 2 Query: 302 CADCGAPCADWASVAHGSFVCLNCAGQHRSLGMHVTFTRSLATDKWTEGGLRIMEAGGNGRLAEFVRRIGLYPWSTIQDKCEHPCLPLYRKHLAALADGEEPP 610
CADCGA WASV +G+F+CL C+G+HR LG+H++F RS D W+E ++ M GGN L +F + + +TI+ K P LYR+ + A +G EPP
Sbjct: 21 CADCGAARPQWASVTYGTFICLECSGKHRGLGVHISFVRSAQMDSWSEKEIQAMRVGGNQNLNDFFAKYNIPKNATIKQKYNSPAAELYREIIKAKVEGREPP 123
BLAST of mRNA_C-linearis_contig101.731.1 vs. uniprot
Match: A0A7J7IJ61_9RHOD (Arf-GAP domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IJ61_9RHOD) HSP 1 Score: 100 bits (249), Expect = 1.430e-20 Identity = 61/172 (35.47%), Postives = 93/172 (54.07%), Query Frame = 2 Query: 299 RCADCGAPCADWASVAHGSFVCLNCAGQHRSLGMHVTFTRSLATDKWTEGGLRIMEAGGNGRLAEFVRRI-GLYPWSTIQ--DKCEHPCLPLYRKHLAALADGE---EPPPISREVLENAVLAASGEEASDLDDDKHDATSSSSLDSDEGGESTRVQLKNLIRNVSGGCGGI 796
RCADCGA WA+V +G+F+CL C+G+HR LG+HV+F RS++ D+W + LR M+ GGN EF+RR G+ P + K P +Y + + ALA GE +P P S L+ + + G ++ ++ S+SL + + + I VSGG G +
Sbjct: 34 RCADCGAHHPQWATVTYGTFICLECSGRHRGLGVHVSFVRSVSMDRWKDWELRHMQVGGNAAFVEFMRRFAGISPGGPVDIAAKYSSPAANVYAQRIRALARGEPWQDPAPSSMPSLQMQLQRSDGNGSAPAIPPGSHSSGSNSLQ-----QPMNLDWRERIHGVSGGNGAV 200
BLAST of mRNA_C-linearis_contig101.731.1 vs. uniprot
Match: A0A7S0DMQ5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DMQ5_9EUKA) HSP 1 Score: 95.9 bits (237), Expect = 1.730e-20 Identity = 46/102 (45.10%), Postives = 64/102 (62.75%), Query Frame = 2 Query: 302 CADCGAPCADWASVAHGSFVCLNCAGQHRSLGMHVTFTRSLATDKWTEGGLRIMEAGGNGRLAEFVRRIGLYPWSTIQDKCEHPCLPLYRKHLAALADGEEP 607
C DC WASV++G+F+C+ C+G HRSLG+H++F RS+ D W + M GGN RL EF+R+ +I+DK L LYR++LAA+A GE P
Sbjct: 36 CMDCDRKHPQWASVSYGTFICIECSGVHRSLGVHISFVRSVTMDGWYPKQIAKMTNGGNKRLREFLRKQKFPSGISIKDKYHQKALELYRENLAAIAQGEAP 137
BLAST of mRNA_C-linearis_contig101.731.1 vs. uniprot
Match: A0A7S1ZJ84_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJ84_TRICV) HSP 1 Score: 95.5 bits (236), Expect = 7.810e-20 Identity = 45/112 (40.18%), Postives = 68/112 (60.71%), Query Frame = 2 Query: 275 VRSLSVCSRCADCGAPCADWASVAHGSFVCLNCAGQHRSLGMHVTFTRSLATDKWTEGGLRIMEAGGNGRLAEFVRRIGLYPWSTIQDKCEHPCLPLYRKHLAALADGEEPP 610
V+++ +CA+CG WASV+ G+ CL C+G HRSLG+H++F RS+A D WT L +M+AGGN + ++ G+ P I++K E P LY++ L A +G P
Sbjct: 48 VKAIPGNDKCAECGMKQPQWASVSFGTIFCLECSGVHRSLGVHISFVRSIAMDSWTPQQLALMKAGGNDKCKAYLSSKGISPSLAIKEKYESPAAQLYKEVLKARVEGRPEP 159 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.731.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.731.1 >prot_C-linearis_contig101.731.1 ID=prot_C-linearis_contig101.731.1|Name=mRNA_C-linearis_contig101.731.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=209bp MNYSSSWNPRVRSLSVCSRCADCGAPCADWASVAHGSFVCLNCAGQHRSLback to top mRNA from alignment at C-linearis_contig101:203079..204797- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.731.1 ID=mRNA_C-linearis_contig101.731.1|Name=mRNA_C-linearis_contig101.731.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1719bp|location=Sequence derived from alignment at C-linearis_contig101:203079..204797- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:203079..204797- >mRNA_C-linearis_contig101.731.1 ID=mRNA_C-linearis_contig101.731.1|Name=mRNA_C-linearis_contig101.731.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at C-linearis_contig101:203079..204797- (Chordaria linearis ClinC8C monoicous)back to top |