mRNA_C-linearis_contig101.730.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig101.730.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI) HSP 1 Score: 316 bits (810), Expect = 4.000e-105 Identity = 183/269 (68.03%), Postives = 209/269 (77.70%), Query Frame = 1 Query: 4 NNNNKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTEMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVE---PAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPRE 792 NN+ M T IKINFQG + DV++P+P TL LQ AIA+ F E+P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCPSSLEI+AA KE+ A KPDPE RLY +AARNLREYNGVPSMTP KLIKTLAFL+LNP+RLVKQ LAPK LL RM A N + PLG K NNEDL++SVAAGMELMSVED KKEWNDGFVS E PA AAP TAE DN ++++D+ AP K+N++HKAFIA GIQLRPRE Sbjct: 11 NNDKMMTTSSIKINFQGASRDVNVPAPVTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKESKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLADSVAAGMELMSVED-KKEWNDGFVSAESDAPAAAAPITAETSSPDNDK--EEENDDAAPEVKKNLIHKAFIAGGIQLRPRE 275
BLAST of mRNA_C-linearis_contig101.730.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI) HSP 1 Score: 317 bits (811), Expect = 8.770e-103 Identity = 179/261 (68.58%), Postives = 202/261 (77.39%), Query Frame = 1 Query: 19 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTEMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPRE 792 M T IKINFQGT+ DV++P P TLA LQ AIA F E+P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL+LA+RLCP SLEI+AA KE A KPDPE RLY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A N + PLG K NNEDL+ESVAAGMELMSVEDDKKEWNDGFVSVEPA + +DN ++K+D AP K+N++HKAFIA GIQLRPRE Sbjct: 1 MTTSSIKINFQGTSRDVNVPVPVTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDDKKEWNDGFVSVEPADTSSPG-----NDN----EEKNDAVAPEVKKNLIHKAFIAGGIQLRPRE 251
BLAST of mRNA_C-linearis_contig101.730.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI) HSP 1 Score: 313 bits (803), Expect = 2.140e-102 Identity = 178/266 (66.92%), Postives = 205/266 (77.07%), Query Frame = 1 Query: 4 NNNNKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTEMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPRE 792 NN+N M T IKINFQG + DV++P+P TLA LQ IA+ F E+P RS EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCP SLEI+AA KE AA+ PD E RLY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A N + PLG K NNEDL+ESVAAGMELMS+EDDKKEWNDGFVSVEPA + D+DN ++K+D AP K+N++HKAFIA GIQLRPRE Sbjct: 12 NNDNTMTTSSIKINFQGASRDVNVPAPVTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKEKKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSLEDDKKEWNDGFVSVEPADTSSP-----DNDN----EEKNDAVAPEVKKNLIHKAFIAGGIQLRPRE 267
BLAST of mRNA_C-linearis_contig101.730.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE) HSP 1 Score: 311 bits (798), Expect = 1.160e-100 Identity = 180/274 (65.69%), Postives = 205/274 (74.82%), Query Frame = 1 Query: 1 NNNNNKMNTRK------IKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTEMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEP---APAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPRE 792 NNNNN+ N K IKINFQG + DV++P+P +LA LQ AIA+ F E+P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCPSSLEI+A KE+ AKKPDPE RLY +AARNLREYNGVPSMT KLIKTLAFL+LNP+RLVKQ LAPK LL RM A N + PLG K NNEDL+ESVAAGMELMSVEDDKKEWNDGFVS E A A P TA+ DN ++ D K++++HKAFI GIQLRPRE Sbjct: 7 NNNNNRYNNDKTMTTPSIKINFQGASRDVNVPAPVSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDLIHKAFITGGIQLRPRE 279
BLAST of mRNA_C-linearis_contig101.730.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE) HSP 1 Score: 304 bits (778), Expect = 1.440e-98 Identity = 176/266 (66.17%), Postives = 200/266 (75.19%), Query Frame = 1 Query: 4 NNNNKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTEMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPRE 792 NN+ M T IKINFQG + DV +P+P TLA LQ AIA+ F E+P RS EAAKD+DLSFTYKDP+GDDIVFDKDSEL+LALRLCP SLEI+AA KE A K PD E LY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A N + LG K NNEDL+E VAAGME MSVEDDKKEWNDGFVSVEPA E SDN ++++D+ AP K+N++HKAFIA GIQLRPRE Sbjct: 23 NNDKTMTTSSIKINFQGASRDVSVPAPATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGK-NNEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEPA-------ETSSSDNGN--EEENDDAAPEVKQNLIHKAFIAGGIQLRPRE 278
BLAST of mRNA_C-linearis_contig101.730.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE) HSP 1 Score: 298 bits (763), Expect = 4.380e-95 Identity = 173/264 (65.53%), Postives = 200/264 (75.76%), Query Frame = 1 Query: 19 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTEMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETAA-KKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEP---APAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPRE 792 M T IKINFQGT+ +V++ +PFTLA LQ IA+ F E+P RS A EA KD+DLSFTYKDP+GDDIVFDKDSEL+LA+RLCP SLEI+AA KE KPDPE RLY +AARNLREYNGVPSMT KLIKTLAFL+LNPRRLVKQ LAPK LL RM A N + LG D NNEDL+ESVAAGMELMSVEDDKKE N+GFVS +P A A P TA+ DN ++++D+ AP K+N++H AFIA GIQLRPRE Sbjct: 1 MTTSSIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGKENKPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAEAANNMKVSKVTLG-DGENNEDLAESVAAGMELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDN--EEENDDAAPEVKKNLIHTAFIAGGIQLRPRE 261
BLAST of mRNA_C-linearis_contig101.730.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE) HSP 1 Score: 295 bits (754), Expect = 6.400e-95 Identity = 171/261 (65.52%), Postives = 196/261 (75.10%), Query Frame = 1 Query: 19 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTEMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPRE 792 M T IKI FQG + DV++ P LA LQ AIA+ F E+PARS A EAA D+DLSFTYKDP+GDDIVFDK+SEL LALRLCP SLEI+AA KE A + PD E +LY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A N + PLG K NNEDL+ESVAAGMELMSVED KKEWNDGFVSVEPA + +DN ++K+D AP K+N++HKAFIA GIQLRPRE Sbjct: 19 MTTSSIKITFQGASRDVNVRVPVMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDGKKEWNDGFVSVEPAEISFPA-----NDN----EEKND-AAPEAKKNLIHKAFIAGGIQLRPRE 268
BLAST of mRNA_C-linearis_contig101.730.1 vs. uniprot
Match: A0A6H5K3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 1.090e-9 Identity = 57/166 (34.34%), Postives = 73/166 (43.98%), Query Frame = 1 Query: 295 KETAAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPRE 792 K + + +P LY AARNL EY+GVPSMT L KT+ LQL P RLV Q LAPK LL +AA +A E + V DD + +E D+ A D T ++ +H F+AAG+QLRPRE Sbjct: 38 KPSCKRAVEPNPLLYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLEGKSAA----GDAXXXXXXXXXXXXXXXXEVDPEQADNNQVSDDSNTNSRDGTDIE-------------HDHVATQDSIDIETGASKHPIHAVFVAAGVQLRPRE 186
BLAST of mRNA_C-linearis_contig101.730.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 5.530e-7 Identity = 53/166 (31.93%), Postives = 75/166 (45.18%), Query Frame = 1 Query: 295 KETAAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPRE 792 K + + +P ++ AARNLREY+GVPS+TP L T+ L+L P RLV Q LAPK LL + A + D GG ++ E + + + S D ND V+ A A+K + + F+A G+QLRPRE Sbjct: 28 KPSCKRTGEPNPLMFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILLKGNSTAGVDADSTDGS--GGFEAEEEQANNQFSHDLSSNS-SDGGDTGNDNIVTQNSI-----------GFEARASK----------HPIQAVFVAVGVQLRPRE 169
BLAST of mRNA_C-linearis_contig101.730.1 vs. uniprot
Match: A0A6H5KI70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 6.220e-7 Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 1 Query: 334 LYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKAL 474 LY AARNLREY+GVPSMT L KT+ LQL P RLV Q LAPK + Sbjct: 53 LYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKXI 99 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.730.1 >prot_C-linearis_contig101.730.1 ID=prot_C-linearis_contig101.730.1|Name=mRNA_C-linearis_contig101.730.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=258bp MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTEMPARSGADEAAback to top mRNA from alignment at C-linearis_contig101:196569..198036- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.730.1 ID=mRNA_C-linearis_contig101.730.1|Name=mRNA_C-linearis_contig101.730.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1468bp|location=Sequence derived from alignment at C-linearis_contig101:196569..198036- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:196569..198036- >mRNA_C-linearis_contig101.730.1 ID=mRNA_C-linearis_contig101.730.1|Name=mRNA_C-linearis_contig101.730.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at C-linearis_contig101:196569..198036- (Chordaria linearis ClinC8C monoicous)back to top |