mRNA_C-linearis_contig101.729.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI) HSP 1 Score: 369 bits (947), Expect = 1.100e-121 Identity = 212/313 (67.73%), Postives = 243/313 (77.64%), Query Frame = 1 Query: 1 NNNNTNDNNKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG 930 NNN N++N M T IKINFQG + DV++P+P TLA LQ IA+ F +P RS EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCP SLEI+AA KE AA+ PD E RLY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A N + PLG K NNEDL+ESVAAGMELMS+EDDKKEWNDGFVSVEPA + D+DN ++K+D AP K+N++HKAFIA GIQLRPREVRPLL+ALDVRP RL KLG VDGK LRAML+AEKK A KR+G Sbjct: 7 NNNRDNNDNTMTTSSIKINFQGASRDVNVPAPVTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKEKKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSLEDDKKEWNDGFVSVEPADTSSP-----DNDN----EEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLQAEKKTAHKRHG 309
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI) HSP 1 Score: 369 bits (947), Expect = 8.170e-121 Identity = 210/303 (69.31%), Postives = 236/303 (77.89%), Query Frame = 1 Query: 31 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG 930 M T IKINFQGT+ DV++P P TLA LQ AIA F +P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL+LA+RLCP SLEI+AA KE A KPDPE RLY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A N + PLG K NNEDL+ESVAAGMELMSVEDDKKEWNDGFVSVEPA + +DN ++K+D AP K+N++HKAFIA GIQLRPREVRPLL+ALDVRP RL KLG V+GK LRAML+AEKK A KR G Sbjct: 1 MTTSSIKINFQGTSRDVNVPVPVTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDDKKEWNDGFVSVEPADTSSPG-----NDN----EEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAEKKVAHKRRG 293
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE) HSP 1 Score: 365 bits (936), Expect = 5.540e-119 Identity = 211/312 (67.63%), Postives = 238/312 (76.28%), Query Frame = 1 Query: 1 NNNNTNDNNKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEP---APAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKR 924 NNN N++ M T IKINFQG + DV++P+P +LA LQ AIA+ F +P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCPSSLEI+A KE+ AKKPDPE RLY +AARNLREYNGVPSMT KLIKTLAFL+LNP+RLVKQ LAPK LL RM A N + PLG K NNEDL+ESVAAGMELMSVEDDKKEWNDGFVS E A A P TA+ DN ++ D K++++HKAFI GIQLRPREVRPLL+ALDVRP RL KLG VDGK LRAML AEKKAA KR Sbjct: 9 NNNRYNNDKTMTTPSIKINFQGASRDVNVPAPVSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLRAEKKAAHKR 319
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE) HSP 1 Score: 359 bits (922), Expect = 7.450e-118 Identity = 210/312 (67.31%), Postives = 238/312 (76.28%), Query Frame = 1 Query: 4 NNNTNDNNKMNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG 930 NN N++ M T IKINFQG + DV +P+P TLA LQ AIA+ F +P RS EAAKD+DLSFTYKDP+GDDIVFDKDSEL+LALRLCP SLEI+AA KE A K PD E LY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A N + LG K NNEDL+E VAAGME MSVEDDKKEWNDGFVSVEPA E SDN ++++D+ AP K+N++HKAFIA GIQLRPREVRPLL+ALDVRP RL KLG VDGK LRAML+AEKKAA KR+G Sbjct: 19 NNRYNNDKTMTTSSIKINFQGASRDVSVPAPATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGK-NNEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEPA-------ETSSSDNGN--EEENDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKRHG 320
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE) HSP 1 Score: 354 bits (909), Expect = 1.400e-114 Identity = 206/312 (66.03%), Postives = 239/312 (76.60%), Query Frame = 1 Query: 31 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETAA-KKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEP---APAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNGGNASGD 948 M T IKINFQGT+ +V++ +PFTLA LQ IA+ F +P RS A EA KD+DLSFTYKDP+GDDIVFDKDSEL+LA+RLCP SLEI+AA KE KPDPE RLY +AARNLREYNGVPSMT KLIKTLAFL+LNPRRLVKQ LAPK LL RM A N + LG D NNEDL+ESVAAGMELMSVEDDKKE N+GFVS +P A A P TA+ DN ++++D+ AP K+N++H AFIA GIQLRPREVRPLL+ALDVRP RL KLG V+GKYLRAML+AE KAA KR+G + + D Sbjct: 1 MTTSSIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGKENKPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAEAANNMKVSKVTLG-DGENNEDLAESVAAGMELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDN--EEENDDAAPEVKKNLIHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAMLQAETKAAHKRHGHDNNND 309
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE) HSP 1 Score: 343 bits (881), Expect = 1.210e-111 Identity = 201/303 (66.34%), Postives = 228/303 (75.25%), Query Frame = 1 Query: 31 MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKET-AAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDVRPRRLVKLGYVDGKYLRAMLEAEKKAAPKRNG 930 M T IKI FQG + DV++ P LA LQ AIA+ F +PARS A EAA D+DLSFTYKDP+GDDIVFDK+SEL LALRLCP SLEI+AA KE A + PD E +LY +AARNLREYNGVPSMTP KL+KTLAFL+LNP+RLVKQ LAPK LL RM A N + PLG K NNEDL+ESVAAGMELMSVED KKEWNDGFVSVEPA + +DN ++K+D AP K+N++HKAFIA GIQLRPREVRPLL+ALDV P RL KLG V GK LRAML AEKK A KR+G Sbjct: 19 MTTSSIKITFQGASRDVNVRVPVMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLAESVAAGMELMSVEDGKKEWNDGFVSVEPAEISFPA-----NDN----EEKND-AAPEAKKNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDLRAMLRAEKKTAHKRHG 310
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI) HSP 1 Score: 312 bits (800), Expect = 3.370e-101 Identity = 187/283 (66.08%), Postives = 217/283 (76.68%), Query Frame = 1 Query: 7 NNTNDNNKM-NTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAKDSDLSFTYKDPEGDDIVFDKDSELSLALRLCPSSLEITAAAKETA-AKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVE---PAPAAPTTAEVVDSDNAAAAKDKDDNTAP--KENVLHKAFIAAGIQLRPREVRPLLLALDV 834 NN ++N+KM T IKINFQG + DV++P+P TL LQ AIA+ F +P RS A EAAKD+DLSFTYKDP+GDDIVFDKDSEL LA+RLCPSSLEI+AA KE+ A KPDPE RLY +AARNLREYNGVPSMTP KLIKTLAFL+LNP+RLVKQ LAPK LL RM A N + PLG K NNEDL++SVAAGMELMSVED KKEWNDGFVS E PA AAP TAE DN ++++D+ AP K+N++HKAFIA GIQLRPRE LLL + + Sbjct: 7 NNCDNNDKMMTTSSIKINFQGASRDVNVPAPVTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKESKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGK-NNEDLADSVAAGMELMSVED-KKEWNDGFVSAESDAPAAAAPITAETSSPDNDK--EEENDDAAPEVKKNLIHKAFIAGGIQLRPRE--GLLLGVSI 283
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5K3J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3J2_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 2.690e-11 Identity = 61/171 (35.67%), Postives = 77/171 (45.03%), Query Frame = 1 Query: 307 KETAAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPREVRPLL 819 K + + +P LY AARNL EY+GVPSMT L KT+ LQL P RLV Q LAPK LL +AA +A E + V DD + +E D+ A D T ++ +H F+AAG+QLRPRE RPLL Sbjct: 38 KPSCKRAVEPNPLLYKAAARNLCEYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKQLLEGKSAA----GDAXXXXXXXXXXXXXXXXEVDPEQADNNQVSDDSNTNSRDGTDIE-------------HDHVATQDSIDIETGASKHPIHAVFVAAGVQLRPRETRPLL 191
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 2.160e-8 Identity = 57/171 (33.33%), Postives = 79/171 (46.20%), Query Frame = 1 Query: 307 KETAAKKPDPEHRLYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKALLIRMAAAKKNEDEAQPQPLGGDKSNNEDLSESVAAGMELMSVEDDKKEWNDGFVSVEPAPAAPTTAEVVDSDNAAAAKDKDDNTAPKENVLHKAFIAAGIQLRPREVRPLL 819 K + + +P ++ AARNLREY+GVPS+TP L T+ L+L P RLV Q LAPK LL + A + D GG ++ E + + + S D ND V+ A A+K + + F+A G+QLRPRE RPLL Sbjct: 28 KPSCKRTGEPNPLMFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILLKGNSTAGVDADSTDGS--GGFEAEEEQANNQFSHDLSSNS-SDGGDTGNDNIVTQNSI-----------GFEARASK----------HPIQAVFVAVGVQLRPRETRPLL 174
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Match: A0A6H5KI70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 1.530e-6 Identity = 31/47 (65.96%), Postives = 34/47 (72.34%), Query Frame = 1 Query: 346 LYTVAARNLREYNGVPSMTPKKLIKTLAFLQLNPRRLVKQSLAPKAL 486 LY AARNLREY+GVPSMT L KT+ LQL P RLV Q LAPK + Sbjct: 53 LYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKXI 99 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.729.1 >prot_C-linearis_contig101.729.1 ID=prot_C-linearis_contig101.729.1|Name=mRNA_C-linearis_contig101.729.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=410bp MNTRKIKINFQGTAGDVDLPSPFTLAGLQQAIASTFGTGMPARSGADEAAback to top mRNA from alignment at C-linearis_contig101:187173..189399- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.729.1 ID=mRNA_C-linearis_contig101.729.1|Name=mRNA_C-linearis_contig101.729.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2227bp|location=Sequence derived from alignment at C-linearis_contig101:187173..189399- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:187173..189399- >mRNA_C-linearis_contig101.729.1 ID=mRNA_C-linearis_contig101.729.1|Name=mRNA_C-linearis_contig101.729.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2460bp|location=Sequence derived from alignment at C-linearis_contig101:187173..189399- (Chordaria linearis ClinC8C monoicous)back to top |