mRNA_C-linearis_contig101.713.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig101.713.1 vs. uniprot
Match: D8LRB1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRB1_ECTSI) HSP 1 Score: 365 bits (936), Expect = 4.160e-107 Identity = 310/855 (36.26%), Postives = 428/855 (50.06%), Query Frame = 2 Query: 113 ALVPLFVSAQQTFKVADCGDLFDNIPYPLSGATEIEFTASPISCQSNHHMIIDNDADVTLTTSLEAMELVNIRFEINSGSTLHVQLPNLQWQSVD------DDQETNGAALYVADGGAEAYFEEDVTFNGCAVP--QYAWGGVGGAIANMGGTLVFEKSASIVGTTDGGGLYSEGTVEFHGEALFQDNKNYN--DYNNGGGGIQM-MGGKMTFKAAASFIGNEVEEEANIGAWEGNIYYGGEGGAIHVSPENSADGMELVFEGPVLFRGNKAYEGAAIYLDSRWSEIAIIFQDLVTFEDN-EAPRSCG----GAIRITG-GLADFQAGVSATGNIAQDGGVFCVRDSDSTLRLAGPVSMTGNTALYQGGAIFNQGNVTMPEDADLSGNTAATCPSIKNWEEWESAYILDSWRNEPDGTVEFTDGSSYTGSSREVCYFGQPTE-STGSPLVLTPETADCDTLFTAGTDLGGNAYTVSAGSDLADYTYLVLDSRLVSALQFEVGIGDFDVSCATQSVIIITGGGEFTISSSASSLNMSNIRVEVTGHTALYMDIPELTMTGIDKSPIGGATHVDRDSSLEFLWDVKFLGNTLSYQTDY-FWLEYGGAALFNAGSVTFHQQAYFRENGQFEIE--GAYSTNNDGGAVLNLGDIQFMRKTKFWYNFNSRGGGXXXXXXXXXXXXXXXXVWRNNYVDYANAEEGSWVSGGHGAGLYNVGPSATTVFHSKAFFRDNVGGFRGGAVAANGADFTTDYFPDGANTITFEHEVKFKDNGFVP------KSEYGRGPDGGGAGLWVYLDATVDFQDRVVFRRNTAGNGGAIMNGGGRVQFASADLVDMVDNVSEQSCPDIMNYDT 2596
AL+ L SA QT V C D P ++ T +E TA+ I+C +N H+ + + A V +T++L A +L N++F + G+ L +P L W SV+ + Q GAA+ + + G+ A F EDVTF+ C +P ++ G G AIAN+G TL+F+ +A+ T DGG LY+ G + F +A+F++NK+ N D N G G+ + G++ F AA FI + VF+GPV+ RGN GA +YL+ + F+DLVT EDN P+ G GAIR+ DFQAG++ATGNIA+DGG V +CP I+ DG + F G +YT +S E+CY G T+ ST + LV E DC+ AY+ +A + D LV+D++ + + F G G SC TQ ++ +TGGGE T++SSA+S + N R EV+G + L +D+P LTMTGI +S GGA VD SS+E + D+ FLGNTL+ Q D W GGAA+++AG+ TF+ A F NGQ++ + G +N DGGAV N G + F RK F NFN XXXXXXXXXXXXXXXX +NN V A S T +F A F DNVGG G A+A+ G+D D D + +TFE + KFKDN +P SEY D GG L +VDFQ+ VF+RN A GGAI+N G + A LV DNV+ +C DI+N D+
Sbjct: 27 ALLFLGGSAAQTTTVGSCSDW----PSTITTDTVLELTAAEITCDTNTHVEVLDGATVEITSALAATKLNNVKFWVREGNFL-CSVPVLDWTSVETVANIHNVQVAGGAAMRI-EPGSTATFAEDVTFSACELPVEDFSGGSEGAAIANLG-TLLFQGTATFKDTPDGGALYTWGDLTFEKDAIFENNKSINGGDGNGSGAGLYSELDGEVLFMGAAYFIXXXXXXXXXXXXXXXXXXCN----------------LPTVFKGPVVVRGNSGMLGA-LYLNGD-----VTFEDLVTVEDNIMEPKLYGDRSEGAIRLGSYSNVDFQAGITATGNIAKDGGALYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSCPGIEF----------------TDGEIVFDGGETYTSASTELCYLGTSTDGSTPTDLV---EEFDCE------------AYSATAPTS-NDLPILVIDTQEIKSWDFGSGGG---FSCPTQMIVYVTGGGELTVTSSAASTTIDNARFEVSGFSKLILDVPGLTMTGIYQSQAGGALFVDVGSSMEVMHDITFLGNTLAIQYDLGLWEARGGAAVYSAGTTTFYGTADFLGNGQYDADADGYEPSNEDGGAVYNSGSMTFARKGTFLDNFNXXXXXXXXXXXXXXXXXXXXXXXKNNSVGVAYTXXXXXXXXXXXXXXXXXDDS-TVLFSGLAIFSDNVGGTAGAALASKGSDPDDDDASDVDSKVTFEDKAKFKDNYIIPPRRPTSSSEYVVDEDKGGGALAALGVTSVDFQNTAVFKRNEAVKGGAILNSGSISFLSEAKLV-TADNVASSACADILNDDS 815 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.713.1 >prot_C-linearis_contig101.713.1 ID=prot_C-linearis_contig101.713.1|Name=mRNA_C-linearis_contig101.713.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=893bp MKLPSSTAWKTLALVPLFVSAQQTFKVADCGDLFDNIPYPLSGATEIEFTback to top mRNA from alignment at C-linearis_contig101:57538..70488+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.713.1 ID=mRNA_C-linearis_contig101.713.1|Name=mRNA_C-linearis_contig101.713.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=12951bp|location=Sequence derived from alignment at C-linearis_contig101:57538..70488+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:57538..70488+ >mRNA_C-linearis_contig101.713.1 ID=mRNA_C-linearis_contig101.713.1|Name=mRNA_C-linearis_contig101.713.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5358bp|location=Sequence derived from alignment at C-linearis_contig101:57538..70488+ (Chordaria linearis ClinC8C monoicous)back to top |