mRNA_C-linearis_contig101.708.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE) HSP 1 Score: 156 bits (394), Expect = 1.640e-36 Identity = 127/352 (36.08%), Postives = 168/352 (47.73%), Query Frame = 3 Query: 222 RGGTPLMCASGRGHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPNGKTALHLVTQYKQGVGLLLDAGASVHNKT---VHGCTPLHFAAGRTNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQL----------------------AYRRRCSLDEAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMAQCMGSSXXXXXXXEVGQDDHGGSESESIAGESCAKSRHVEVARTDDGVGTQ-------ERAQRERVRRG-------LVAALVGLELEGVFRTIVGYLY 1160 RG +PLM AS GH +TV+ LL GAD+ LR + + + +A+D+A G V+ A++E+G ++ A G TALH + Q V +LLDAGA V+ K +HG TPL + A+ ALL+ C + ++ V LLLRWG SETAV LTP+ +L+ A R E + AR LL RAP DR WRRRCW+VMLRARAER R A GS G D + ++ A + +V +TD G + ER + R RG LV ALVGLE E VFRTIV +L+ Sbjct: 205 RGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGM-TAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHA-RGAQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRARVLLARAPADRTWRRRCWLVMLRARAERGRGAPSSGS----------GSDRTEAATGRNLPRHEEADGDNSKVGKTDAGAVGEGSGPTDGERGRDGRATRGAAAGEGGLVPALVGLESEEVFRTIVCFLH 544
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI) HSP 1 Score: 134 bits (336), Expect = 2.340e-29 Identity = 115/315 (36.51%), Postives = 147/315 (46.67%), Query Frame = 3 Query: 258 GHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPNGKTALHLVTQYKQG--VGLLLDAGASVHNKT--VHGCTPLHFAAGRTNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRRRCSLD-------EAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMA----QCMGSSXXXXXXXEVGQDDHGGSESESIAGESCAKSRHVEVARTDDGVGTQERAQRERVRRGLVAALVGLELEGVFRTIVGYL 1157 GHV TVK+LLA GAD +R + HSAL AA R DV+ ALLEHG D+N + LH Q+ + +LLDAGA + K + G T LHFAA N A+ ALLR + + V +LLR G SE AV P L +++ R + + E E A LL RAP DR WRRRCW++MLR R +ER + G +G GGS + +G S + G G RA E RGLV+ LV LE +GVFRTI+GY+ Sbjct: 202 GHVATVKVLLAAGADTDIRD-----LDSHSALVFAAQYERIDVMKALLEHGVDVNVGEDHWNP-LHWAAQFNSTGCITVLLDAGADIDVKCSFLDGRTSLHFAAETGNNEALLALLRRGANVHQTTDDGSTALHLVSEMEGHAPDDTVDILLRRGASEQAVDRNGKAPVDLFKRVQRRFQSARPMGDSEWPELERAIELLARAPADRTWRRRCWLIMLRERTNKERTIHGGRRRKGKKVGNGEGLLLGDGKRGGSNNVRRSGRSRGR-----------GGG---RAAVEVDLRGLVSVLVCLESDGVFRTILGYI 496
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D7FYF2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF2_ECTSI) HSP 1 Score: 112 bits (281), Expect = 1.340e-22 Identity = 123/359 (34.26%), Postives = 151/359 (42.06%), Query Frame = 3 Query: 222 RGGTPLMCASGRGHVTTVKILLATGA-DLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPN-GKTALHLVTQYKQGVGL---LLDAGASVHNKTVHGCTPLHFAAGR-------TNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPR-VEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRR-------RCSL---DEAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMA-----QCMGSSXXXXXXXEVGQDDHGGSESESIAGESCAK-----SRHVEVARTDDGVGTQERAQR--------------ERVRRGLVAALVGLELEGVFRTIVGYL 1157 RG PL A V + LLA GA T S R L LAA G D++ LL+HG D+N+ G TALH + G G L+DAGA ++ + G +PLH+AA + + ALL RPR + + V LLLRWGG E VG T + LLE + +C L DE E AR LL RA DRAWRRRC VMLRAR +R A + E GQ + GSES + G A S A D G + +QR ER R +V LV L E VFRTIVG+L Sbjct: 99 RGARPLHHAIAEDRVAATETLLAAGALSATADDSSSFR-----PLVLAACKGSIDIINILLKHGVDVNSRDDVVGATALHAAANWSSGSGAVHALIDAGAEINVQRKDGGSPLHYAAASRASPPSSSPFETILALLERGASVNQVHSGTAQTPLLLACQHRPRGLGSVVDLLLRWGGDEKVVGGDGRTASELLELDQHHHATENEHHQCHLEQDDEIERARSLLSRAKEDRAWRRRCLPVMLRARQQRVCTAPNGDIEARRRGGRDHADLEAGQTE--GSESIGVGGAPGAANEIEDSNGTATADLVDNSGVEGESQRLACVSGSDNRLDETERWTR-VVDKLVRLTAEDVFRTIVGFL 449
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI) HSP 1 Score: 110 bits (275), Expect = 3.560e-22 Identity = 79/197 (40.10%), Postives = 103/197 (52.28%), Query Frame = 3 Query: 342 HSALDLAAVNGRGDVVVALLEHGADIN--AASPNGKTALH--LVTQYKQGVGLLLDAGASVHNKTVHGC----TPLHFAAGRTNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRRRCSLDEAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMA 908 ++ +++A G V+ A LEHG D + A +G TALH + + V +LL+AGA +++ G TPL AA + A+R LLR Q P V V LLLRWG SETAV TPA + ++LA R + +E A LL RAP DRAWRRR WVVMLRAR+E ER+A Sbjct: 168 NAEINVATQLGHVGVIKAFLEHGVDASSQACPASGWTALHQAALDNQAEAVEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLAAHEQTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRARSETERIA 364
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI) HSP 1 Score: 109 bits (272), Expect = 3.400e-21 Identity = 86/227 (37.89%), Postives = 104/227 (45.81%), Query Frame = 3 Query: 231 TPLMCASGRGHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPNGKTALHLVTQYKQG--VGLLLDAGASVHNKTVHGCTPLHFAAG-RTNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRRRCSLDEAELARGLLVRAPVDRAWRRRCWVVMLRARAERER 902 +PL AS RGH++TVK LL GAD+++RT +S +NA S +G TALH Q + +LLDAGA + K TPL A +V+A+ LLR C P +A V LLLRWG SE + G TPA LL E E A LL AP DRAWRRR W+VMLRAR ERER Sbjct: 206 SPLTVASQRGHLSTVKTLLNAGADVSMRTGHR-----NSXXXXXXXXXXXXXXXXXXXXXXXVNA-SKHGYTALHAGCAMNQAGAMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGPMDKTMLHLA--CMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSRKAREVERAHVLLANAPADRAWRRRSWLVMLRARTERER 424
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI) HSP 1 Score: 105 bits (262), Expect = 4.960e-20 Identity = 96/315 (30.48%), Postives = 128/315 (40.63%), Query Frame = 3 Query: 231 TPLMCASGRGHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPNGKTALHLVTQYKQGVG----LLLDAGASVHNKTVHGCTPLHFAAGRTNVRAMRALLRXXXXXXXXXXXXXXXXXXX-CAAQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRR-RCSLDEAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMAQCMGSSXXXXXXXEVGQDDHGGSESESIAGESCAKSRHVEVARTDDGVGTQERAQRERVRRGLVAALVGLELEGVFRTIVGYL 1157 TPLM A RGH+ V+ LL GAD +LR ++ +S ++A G TALH + G +L+ A A K+V G TPLH AA V + ALL+ C QR + A++ LLLRWG ETA TP +L CS DE + AR LLVRAP DR WRRR W+V+LR+R G+S + ++ K ++VA GV V L LE E VFR+++G+L Sbjct: 209 TPLMLAVRRGHLAIVETLLEAGADCSLR-----QLEDYSXXXXXXXXXXXXXXXXXXXXXXXVDAQDRAGCTALHTAILFSDRAGPAVHMLVKARADTELKSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSRTIVVAHRCAKGASDSGLSLCQARRN---------------GKGARIDVAGNSSGV---------------VELLTELEPEAVFRSVLGFL 488
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE) HSP 1 Score: 105 bits (262), Expect = 5.390e-20 Identity = 109/348 (31.32%), Postives = 135/348 (38.79%), Query Frame = 3 Query: 225 GGTPLMCASGRGHVTTVKILLATGADLTLR-TSPMCR----------------------------ISLHSALDLAAVNGRGDVVVALLEHGADINAA----SPNGKTALHLVTQYKQGVGLLLDAGASVHNKTVHGCTPLHFAAGRTNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRRRCSLDEAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMAQCMGSSXXXXXXXEVGQDDHGGSESESIAGESCAKSRHVEVARTDDGVGTQER----AQRERVRRGLVAALVGLELEGVFRTIVGYL 1157 G TPLM A+ +GHV TVK+LLA GAD+ +R C I S L AA + R D V LL+ GA+IN + + + LL GA V KT G T LH A A+ +V+ V LLRWG SE AV TP L ++A E + A LL RAP DRAWRRR W+VML R ++ER + G GE V + + G G R A + RG+V LVGLE EGVFRTIVGY+ Sbjct: 206 GYTPLMVAAEQGHVATVKVLLAAGADVDVREVDYSCSAXXXXXXXXXXXXXXXXXXXXXXANEGVIDDQSPLHWAAGHNRPDCVAVLLDAGANINGRCNFLDNHXXXXXXXXXXXXEALLALLSRGARVDEKTDDGSTALHLAGH---------------------------------ARGYKVDDTVDTLLRWGASEQAVDENDETPVDRLTEVAREVVWEWPELDRALELLARAPADRAWRRRGWLVMLHERTKKERHVR--GDRPRK--------------------GEKVGSGEEVLLGDGERGRGKNARRRGGAAVKADLRGVVNVLVGLESEGVFRTIVGYV 498
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: A0A6H5K8N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N6_9PHAE) HSP 1 Score: 102 bits (255), Expect = 2.610e-19 Identity = 118/360 (32.78%), Postives = 152/360 (42.22%), Query Frame = 3 Query: 222 RGGTPLMCASGRGHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPN-GKTALHLVTQYKQG---VGLLLDAGASVHNKTVHGCTPLHFAAGR-------TNVRAMRALLRXXXXXXXXXXXXXXXXXXXCAAQRPR-VEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRR-------RCSL---DEAELARGLLVRAPVDRAWRRRCWVVMLRARAERERMAQCMGSSXXXXXXXEVGQDDHG--------GSESESIAGESCA-----KSRHVEVARTDDGVGTQERAQ-------------RERVRRGLVAALVGLELEGVFRTIVGYL 1157 RG PL A V + LL GA L +P S L LAA G D++ LL+HG D+N+ G TALH G V L+DAGA ++ + G +PLH+AA + + ALL+ RPR + + V LLLRWGG +T VG T + LLE + +C L DE AR LL RA DRAWRRRC VMLRA +R C S G+D HG GS+ I G A +S A D G + +Q ++R R +V LV L +E VFRTIVG++ Sbjct: 99 RGARPLHHAIAEDRVAATEALLVAGA---LGATPEDSSSFRP-LVLAACKGSIDIINVLLKHGVDVNSRDDVVGATALHAAANCASGASAVHALVDAGAEINVQRKDGGSPLHYAAASRASSSPSSPFETILALLQRGASVNQVHSGTAQTPLLLACQHRPRGLGSVVDLLLRWGGDDTVVGGDGRTASELLELDQHHHATETEHHQCHLEQDDEIGRARTLLSRAKEDRAWRRRCLPVMLRAHQQRV----CTAPSGDIEARRRGGRD-HGDLEAGQMEGSKRIDIGGAPGAANEIEESNGTATADLVDNSGVEGESQSLACVGGSDRLDEKDRWTR-VVDKLVRLTVEDVFRTIVGFI 448
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D7G1Y4_ECTSI (N/a n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y4_ECTSI) HSP 1 Score: 96.7 bits (239), Expect = 3.770e-17 Identity = 49/56 (87.50%), Postives = 53/56 (94.64%), Query Frame = 3 Query: 1986 SGKGTICAEVVKRSNAVHVSCGDLLREEVQCWTPLGLQVAEKMKEGKLVDASTVLA 2153 SGKGTICAEVVKR+NAVHVS GDLLR+EVQ TPLGLQVAE+MKEG+LVDASTVLA Sbjct: 259 SGKGTICAEVVKRANAVHVSSGDLLRDEVQRQTPLGLQVAERMKEGRLVDASTVLA 314
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 8.350e-17 Identity = 85/242 (35.12%), Postives = 115/242 (47.52%), Query Frame = 3 Query: 225 GGTPLMCASGRGHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVVVALLEHGADINAASPNGKTALHLVTQYKQ--GVGLLLDAGASVHNKTVHGCTPLHFAAGRTNVRAMRALLRXXXXXXXXXXXXXXXXXXXCA-AQRPRVEAAVGLLLRWGGSETAVGSGRLTPAGLLEQLAYRRRCSLD--EAELARGLLVRAPVDRAWRRRCWVVMLRA---RAERERMAQCMGSS 926 G TPL A GH++TVK LLA D ++R R +S LDLAA G V+ A+L+HG D+N + +G T+LH+ + + +L++AGA V + CTP A A AL + A R V A V +LLR G ETA+ T A ++ C L+ + E R LL APVDRAWRRR ++V+ RA +A R R A SS Sbjct: 71 GRTPLHLAVENGHLSTVKALLAADPDTSVRYRIWNRS--YSVLDLAAQKGDACVLRAILQHGVDVNRRT-DGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACINHCHEAALALYKHGSNIEARDIRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRAWRRRGFLVLCRAFWIKARRLRAASSNASS 309 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig101.708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig101.708.1 >prot_C-linearis_contig101.708.1 ID=prot_C-linearis_contig101.708.1|Name=mRNA_C-linearis_contig101.708.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=366bp MCASGRGHVTTVKILLATGADLTLRTSPMCRISLHSALDLAAVNGRGDVVback to top mRNA from alignment at C-linearis_contig101:26811..30051+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig101.708.1 ID=mRNA_C-linearis_contig101.708.1|Name=mRNA_C-linearis_contig101.708.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3241bp|location=Sequence derived from alignment at C-linearis_contig101:26811..30051+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig101:26811..30051+ >mRNA_C-linearis_contig101.708.1 ID=mRNA_C-linearis_contig101.708.1|Name=mRNA_C-linearis_contig101.708.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2196bp|location=Sequence derived from alignment at C-linearis_contig101:26811..30051+ (Chordaria linearis ClinC8C monoicous)back to top |