mRNA_C-linearis_contig100.704.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI) HSP 1 Score: 309 bits (791), Expect = 5.130e-102 Identity = 153/250 (61.20%), Postives = 184/250 (73.60%), Query Frame = 1 Query: 4 RVPLMECGDLPCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVLDDQEQKNRLTGGRRAVIITAFGVWDAVHGTGDEASLNACSDVVTKLTNVAQLHTTVQETAVNTDASPPMVFLLQNNPFLADSEEDHFLSDLHQIQRQIVENSEEGELYIVRDRDSIYERMSCFRMGESIHFMDPVKLVEGKMLWDLIALVA 753 R+PLM GDLPCGF+TR+ T E+LASRY HF+GDST+RRL ESF+SIAT S H YYHE RNLT+ LQV F+WAP+C +E L E++D+Q L GGRRA+I+TAFGVWD+ HG GDEA+L C+D V L VAQ TA N ASPP+VFLLQNNPFL SE+D FL DLHQIQR+IV++ E+ +Y+V DR+SI+ R+SC+RM ESIHF DPVKLVEGKMLWDLI LVA Sbjct: 93 RIPLMGSGDLPCGFETRLPTSTFEDLASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYCRQVKNE-----SLHEIMDNQA----LDGGRRAIIVTAFGVWDSSHGGGDEAALGVCADAVRSLVQVAQPPPAGSTTAENIAASPPLVFLLQNNPFLPGSEQDLFLRDLHQIQREIVDSGEQEAVYLVHDRESIFNRLSCYRMSESIHFNDPVKLVEGKMLWDLIELVA 333
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI) HSP 1 Score: 194 bits (494), Expect = 4.320e-56 Identity = 123/320 (38.44%), Postives = 165/320 (51.56%), Query Frame = 1 Query: 1 HRVPLMECGDLPCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVLDDQEQKNRLTGGRRAVIITAFGVWDAV------------------------HGTGDEASLNACSDVVTKLTNVAQ-------------------LH-----TTVQETAVN--------------TDASPPMVFLLQNNPFLADSEEDHFLSDLHQIQRQIVENSEEGE--------LYIVRDRDSIYERMSCFRMGESIHFMDPVKLVEGKMLWDLIALV 750 +R+P ME G LPCGF+ R + LE++AS++TFHF+GDST RRL ESFVSI T + S H+ H + + G L+ +FYWAPFC S VG L V+D + R G +R VIITAFGV D+ +G+ A+L AC +L A +H TT T N TD +PP+VFL+QNN + +S ED++L +L +IQR V+ E GE +Y+V D S++ +SC+R IHF +PVKLVEGKMLWDL+ALV Sbjct: 114 YRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGS---ESVGAKLATVMDGVKTAKR--GDKRTVIITAFGVHDSYELPLLVKGSASTSYMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAAKVMAWADPTAEKGQWSKAVHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQEWEAGEGNEDAEGGIYLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLLALV 428
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE) HSP 1 Score: 170 bits (430), Expect = 5.390e-46 Identity = 125/344 (36.34%), Postives = 162/344 (47.09%), Query Frame = 1 Query: 1 HRVPLMECGDLPCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVLDDQEQKNRLTGGRRAVIITAFGVWDAV--------HGTGD----------------EASLNACSDVVTKLTNVA------------------------QL---------HTTVQ--------------------ETAVNTDASP-------PMVFLLQNNPFLADSEEDHFLSDLHQIQRQIV--------ENSEEGE--LYIVRDRDSIYERMSCFRMGESIHFMDPVKLVEGKMLWDLIALV 750 +R+ M G LPCGF+ R+ +E++AS+Y+FHF+GDST+RRL ESFVSI T + S H N + G L+V FYWAP C SG E VG L V+D G+RAVIITAFGV DA HG+ A+L AC D T+L A QL H T Q E A++ A P P++FL+QNN + S E+ F DLH+IQRQ V ++GE L++V D +Y +SC+R IHF +PVKL+EGKMLWDL+ LV Sbjct: 99 YRLHHMHSGGLPCGFEERLGKEAMEDIASKYSFHFIGDSTSRRLGESFVSIFTGRGSTHPVVQRDINFSSGNLKVHFYWAPLC--SGPE-SVGAMLTTVMD---AVLAAKDGKRAVIITAFGVHDAFELQHAANGHGSPSYQSTLPQDIVEKDGMRAAALGACRDATTQLVRTAAATAVPGTAAPPVEEEQSPGDAQHQLPNVSTQVGRHETSQKQAAGIPPNNVRGGSVGAGKEDALDASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQAVGEWEASEGSKGDDGERGLFLVDDSVGLYGNLSCYRSANPIHFDEPVKLMEGKMLWDLLVLV 436
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE) HSP 1 Score: 158 bits (399), Expect = 7.050e-41 Identity = 121/388 (31.19%), Postives = 160/388 (41.24%), Query Frame = 1 Query: 1 HRVPLMECGDLPCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVL------------DDQEQKNRLTGG--RRAVIITAFGVWDAVH----------------GTGDEA---------SLNACSDVVTKLTNVAQLHTTVQ----------------------------ETAVNTDAS----------------------------------------------------PPMVFLLQNNPFLADSEEDHFLSDLHQIQRQIVENSEEGE---------------LYIVRDRDSIYERMSCFRMGESIHFMDPVKLVEGKMLWDLIALVAGVA 762 +RVPLME G+ CGF+T M L +LA +Y F F+GDSTTRRLAESFVSI + +AS H H R +++ G+L+V F WAP C G G+ + + L +D G RR VI TAFGV DA G EA +L C D +L VA + VN D +VFLLQNNPF SE D+FL LH+IQ Q+++ + + ++++RDRDS+Y MSC+R+ SIHF +PVKLVEGKMLW L+ +AG + Sbjct: 256 YRVPLMESGNASCGFETLMPDEKLLDLALKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDG---GISAAVRDALGFRSSTYGSGNNNDGXXXXXXENGSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVAAQGPTAAALETCRDATRELVEVAAAXXXXXXXXXXXDGGGDVGNNPSLSEATGEGGEGQVVVNADGRRDGIADKKLRGGGGVSSEVAVHESDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXLVFLLQNNPFNPRSELDYFLQQLHRIQEQVIDEAAAKQGCEXXXXXXXXXXXRVFLLRDRDSLYSSMSCYRIDGSIHFHEPVKLVEGKMLWHLVE-IAGAS 639
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI) HSP 1 Score: 149 bits (375), Expect = 2.810e-38 Identity = 115/336 (34.23%), Postives = 150/336 (44.64%), Query Frame = 1 Query: 34 PCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVLDDQEQKNRLTGGRRAVIITAFGVWDAV--------HGTGD----------------EASLNACSDVVTKLTNVA------------------------QL-----------HTTVQ---------------------ETAVNTDASP-------PMVFLLQNNPFLADSEEDHFLSDLHQIQRQIVENSEEGE----------LYIVRDRDSIYERMSCFRMGESIHFMDPVKLVEGKMLWDLIALV 750 PC Q R+ +E +AS+Y+FH +GDST+RRL ESFVSI T + S H R+ + G L+V FYWAP C SG E VG L V+D G+RAVIITA+GV DA HG+ A+L AC D T+L A QL H T + +T + A P P++FL+QNN + S E+ F DLH IQRQ+V E E L++V + +Y +SC+R IHF +PVKL+EGKMLWDL+ LV Sbjct: 77 PCVSQERLGKDAMEYIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHRIAQRDRDFSSGNLKVHFYWAPLC--SGPE-SVGAMLASVMD---AVRAAKDGKRAVIITAYGVHDAFELHHAANGHGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAATAVPGTEAPPVEEEQSPGDGRRQLPNVSTKVEVGPHETSEKQAAGIPPHNVRGGSVGAGNEDTLLGASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHIIQRQVVGEWEASEGSKGDGGERGLFLVDNSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLLVLV 406
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.620e-27 Identity = 66/143 (46.15%), Postives = 80/143 (55.94%), Query Frame = 1 Query: 1 HRVPLMECGDLPCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVL---------------DDQEQKNRLTGGRRAVIITAFGVWDAVH 384 +RVPLME GD CGF+TRM L +LAS+Y F F+GDSTTRRLAESFVSI + +AS H H R +++ G+L+V F WAP C G GV + + L DD RR VI TAFGV DA Sbjct: 228 YRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVGG---GVSAAVRDALGFRSSTYGSDNNYDGDDXXXXXXXXSPRRTVIFTAFGVHDATE 367
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE) HSP 1 Score: 108 bits (269), Expect = 4.490e-24 Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = 1 Query: 67 TLENLASRYTFHFVGDSTTRRLAESFVSIATDKASGHEYYHERRNLTIGELQVKFYWAPFCEASGHEPGVGVGLEEVLDDQEQKNRLTGGRRAVIITAFGVWDAVHGTGDEA-----------------------SLNACSDVVTKLTNVAQL 456 TLE+L+SRY FHFVGDSTTRRLAESFVSI T +AS H HER +++ G L+V F+WAP C + + + ++E++ Q + G RA+IITAFGV +A GD+A +LN C +V ++L +VA L Sbjct: 78 TLEDLSSRYVFHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARSK--IQASIDEIVAAQLRN----GDARAIIITAFGVHNAHRLYGDQAGTLPRYTAPSSHDTFREEDAEAAALNVCEEVTSQLVHVANL 224 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.704.1 >prot_C-linearis_contig100.704.1 ID=prot_C-linearis_contig100.704.1|Name=mRNA_C-linearis_contig100.704.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=251bp MECGDLPCGFQTRMTHRTLENLASRYTFHFVGDSTTRRLAESFVSIATDKback to top mRNA from alignment at C-linearis_contig100:567852..570966+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig100.704.1 ID=mRNA_C-linearis_contig100.704.1|Name=mRNA_C-linearis_contig100.704.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3115bp|location=Sequence derived from alignment at C-linearis_contig100:567852..570966+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig100:567852..570966+ >mRNA_C-linearis_contig100.704.1 ID=mRNA_C-linearis_contig100.704.1|Name=mRNA_C-linearis_contig100.704.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at C-linearis_contig100:567852..570966+ (Chordaria linearis ClinC8C monoicous)back to top |