mRNA_C-linearis_contig100.696.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig100.696.1 vs. uniprot
Match: A0A6H5JUN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN3_9PHAE) HSP 1 Score: 291 bits (744), Expect = 9.160e-89 Identity = 173/273 (63.37%), Postives = 187/273 (68.50%), Query Frame = 3 Query: 1017 ISKYPTRVLLIQCLTRLWESAGIGDGERCSKIFIGKPSGSTAGVEGLFGNDGVMYGLVFQVARESAADAVDIMAHRQVQPCLLITD-IPCMIAPIAERLHPGLLQGGGALPRNAEGQVTL-------------------------FPSPPA-ASASD--PAEPLLTVYAAYAAGQPMPGVQPHLDFRALLQRAGDVVERNREIQAAEEAASRVSDWSSSPKRIADLAETTLKSLHKKGWHAMTLFEVVLVYWLWFGAAECDAPADEVQGPAPR 1748
+ ++P LLIQCLTR WESAGIGD ERCS+IFIGKPSG T GVEGLFG DGV+Y LVFQVARESAAD VDI++HRQ + P P GGGALPRNAE QV L FPSP ASASD PA+ + TVYAAYA GQPMPGVQPHLDFRALLQRA DVVERNRE+ A E AS V DWSSS KRIADLAE+TLKSLHK+GWHAMTLFEVVL+Y LWF AA AP DE QGPAPR
Sbjct: 102 VQRFPPLELLIQCLTRPWESAGIGDRERCSRIFIGKPSGLTTGVEGLFGTDGVLYALVFQVARESAADGVDIISHRQSSTTMPADHGYPMHDCTHCREASPRSTPGGGALPRNAELQVCLKELQHVGARAYEFPDLNEVRVPPMEFPSPTTTASASDAHPAQSVPTVYAAYAVGQPMPGVQPHLDFRALLQRACDVVERNREVHATEGNASGV-DWSSSAKRIADLAESTLKSLHKQGWHAMTLFEVVLMYMLWFQAAAHAAPEDEEQGPAPR 373
BLAST of mRNA_C-linearis_contig100.696.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE) HSP 1 Score: 207 bits (527), Expect = 1.020e-55 Identity = 125/247 (50.61%), Postives = 149/247 (60.32%), Query Frame = 3 Query: 1086 GDGERCSKIFIGKPSGSTAGVEGLFGNDGVMYGLVFQVARESAADAVDIMAHRQVQPCLLITDIPCMIAPIAERLHPGLLQGGGALPRNAEGQVTL------------FPSP----------PAASASDPAEPL--------LTVYAAYAAGQPMPGVQPHLDFRALLQRAGDVVERNREIQAAEEAASRVSDWSSSPKRIADLAETTLKSLHKKGWHAMTLFEVVLVYWLWFGAAECDAPADEVQG 1736
G+GERCSK+F+GKPSG+TAGVEG F DGV FQV ESAAD VDI+AH VQPCL+ITDIPC I PIAERL PGLLQ GG LPR+AEGQV L FP P A+ + A P+ + PGVQPH+DFR+LL+RA D +R R + +D SSS RI+DLAE+TL LHK+GW+AMTL+EVVL+Y+LWF A P E G
Sbjct: 5 GEGERCSKLFVGKPSGTTAGVEGFFTTDGVFVYGTFQVTPESAADVVDILAHILVQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPRDAEGQVCLKELQHIGAHAYEFPDEHEVKVPPMGFPTAAFTLGASPVQXXXXXXXXXXXXXXXXAETAPGVQPHVDFRSLLRRAADAQDRARTV----------ADPSSSLMRISDLAESTLNGLHKRGWYAMTLYEVVLLYYLWFQATGWATPEGEAPG 241
BLAST of mRNA_C-linearis_contig100.696.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI) HSP 1 Score: 204 bits (518), Expect = 5.040e-55 Identity = 131/276 (47.46%), Postives = 162/276 (58.70%), Query Frame = 3 Query: 978 EHLQALLPPGGKGISKYPTRVLLIQCLTRLWESA-GIGDGERCSKIFIGKPSGSTAGVEGLFGNDGVMYGLVFQVARESAADAVDIMAHRQVQPCLLITDIPCMIAPIAERLHPGLLQGGGALPRNAEGQVTL-------------------------FPSPPAASASDPAEPLLTVYAAYAAGQPMPGVQPHLDFRALLQRAGDVVERNREIQAAEEAASRVSDWSSSPKRIADLAETTLKSLHKKGWHAMTLFEVVLVYWLWFGAAECDAPADE 1727
+++ L G KGIS++ + L+QC LW S G G GERCSK+FIGK G+TAGVEG F DGVMY VFQ+A ESAADAVD+ AH V P L+ITDIPCM+APIAERLHP LL+ G LPR+A+G V+L FPSPP +SA+D + +YA YA QPH++F ALLQR+ A A + V D SS KR LAE L SLH++G +AMTLFEVV V+ W A +A AD+
Sbjct: 187 KNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCSKLFIGKQPGTTAGVEGAFTPDGVMYANVFQIAAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATDVV--VDNIYAVYADANFSLPAQPHVNFGALLQRS------------ARSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRA-VNAKADD 447
BLAST of mRNA_C-linearis_contig100.696.1 vs. uniprot
Match: A0A6H5L6Z2_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z2_9PHAE) HSP 1 Score: 203 bits (516), Expect = 3.790e-53 Identity = 94/127 (74.02%), Postives = 103/127 (81.10%), Query Frame = 3 Query: 3 EGAIGGDTGFASYTQRTNPLEFAEKVAQLRAITVVYKFPVDEPELKPGTYGRKKIHVNTCFCTGCGERYHQLANGQATLLGQGTNGGAELRVVEFERKACTRCKLAGWAGDDIYEDGVLTTTTKLCL 383
EG IGGDTGFASYTQ NPL F EK+AQLR IT VYKFPV EPELKPGTYGRK+IHVN CFCTGCG++Y +L +G+ATLLGQ TNGGAELRVV+ ERK C RCKL GWAGDDIY DGV + L
Sbjct: 514 EGTIGGDTGFASYTQGENPLYFGEKMAQLRVITAVYKFPVAEPELKPGTYGRKRIHVNACFCTGCGQKYQELPDGEATLLGQRTNGGAELRVVKVERKGCKRCKLIGWAGDDIYADGVFNYNNNVVL 640
BLAST of mRNA_C-linearis_contig100.696.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE) HSP 1 Score: 183 bits (464), Expect = 1.740e-46 Identity = 120/253 (47.43%), Postives = 150/253 (59.29%), Query Frame = 3 Query: 1047 IQCLTRLWESA-GIGDGERCSKIFIGKPSGSTAGVEGLFGNDGVMYGLVFQVARESAADAVDIMAHRQVQPCLLITDIPCMIAPIAERLHPGLLQGGGALPRNAEGQVTL------------FPS------PP------AASASDPAEPL----LTVYAAYAAGQPMPGVQPHLDFRALLQRAGDVVERNREIQAAEEAASRVSDWSSSPKRIADLAETTLKSLHKKGWHAMTLFEVVLVYWLWFGAAECDAP 1718
I C +LW A G + +RCSK+FI +PSG TAGVEGLF DGV+ + QV P +L+TDIPCM+AP AE+ PGLLQ GGALPRNA+GQV+L +P PP +ASAS A P+ VY A+A P VQPH+DF ALL+ AGDVVERNR++Q + DWSSSPKRI++LAET+L+ LH++G +A+ LFEVVL Y LWF A P
Sbjct: 93 IGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVVDLEPLWTPCGTWRAIATPSVLVTDIPCMVAPNAEKNVPGLLQNGGALPRNAKGQVSLPGLQHIGARGYDYPDRHEVRVPPTGCAFVSASASSTAPPVDQLRYNVYDAFATALSGP-VQPHIDFSALLKHAGDVVERNRQVQGTD-------DWSSSPKRISELAETSLRYLHQQGCYALNLFEVVLAYALWFQEASVADP 337
BLAST of mRNA_C-linearis_contig100.696.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE) HSP 1 Score: 169 bits (429), Expect = 3.190e-41 Identity = 100/184 (54.35%), Postives = 125/184 (67.93%), Query Frame = 3 Query: 1233 MAHRQVQPCLLITDIPCMIAPIAERLHPGLLQGGGALPRNAEGQVTL------------FPS------PPA------ASASDPAEPLLTVYAAYAAGQPMPGVQPHLDFRALLQRAGDVVERNREIQAAEEAASRV---SDWSSSPKRIADLAETTLKSLHKKGWHAMTLFEVVLVYWLWFGAA 1703
+A +VQPCL+ITDIPCM+APIA++ HP LL GGALPRNAEGQV+L FP PP AS++ A+P+ VYA YAA +P PGVQ LDFR LL D+VE++R+++AA +A V SDWSSSPKRI++LAE TL SLH +GW+A+ LFEVVLV+ LWF AA
Sbjct: 10 IATTKVQPCLVITDIPCMLAPIADKNHPDLLDEGGALPRNAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFTSATASSALGAQPVHNVYAVYAAAEPPPGVQAQLDFRTLLGHHSDMVEKDRQLRAAPDAEGDVTGASDWSSSPKRISELAENTLASLHNQGWYAIDLFEVVLVFSLWFQAA 193
BLAST of mRNA_C-linearis_contig100.696.1 vs. uniprot
Match: A0A6H5KZ13_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ13_9PHAE) HSP 1 Score: 156 bits (394), Expect = 6.160e-40 Identity = 73/98 (74.49%), Postives = 82/98 (83.67%), Query Frame = 3 Query: 3 EGAIGGDTGFASYTQRTNPLEFAEKVAQLRAITVVYKFPVDEPELKPGTYGRKKIHVNTCFCTGCGERYHQLANGQATLLGQGTNGGAELRVVEFERK 296
E IGG TGFASYTQ NPL F E++AQ R IT VYKFPV EPELKPGTYGRK+IHVN CFCTGCG++Y +L +G+ATLLGQ TNGGAELRVV+ ERK
Sbjct: 156 EDTIGGCTGFASYTQHENPLYFGEEMAQHRVITAVYKFPVAEPELKPGTYGRKRIHVNACFCTGCGQKYQELPDGEATLLGQRTNGGAELRVVKVERK 253
BLAST of mRNA_C-linearis_contig100.696.1 vs. uniprot
Match: A0A6H5JV99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV99_9PHAE) HSP 1 Score: 157 bits (398), Expect = 1.990e-39 Identity = 95/184 (51.63%), Postives = 121/184 (65.76%), Query Frame = 3 Query: 1245 QVQPCLLITDIPCMIAPIAERLHPGLLQGGGALPRNAEGQVTL-------------------------FPSPPAASASDPAEPLLTVYAAYAAGQPMPGVQPHLDFRALLQRAGDVVERNREIQAAEEAASRV---SDWSSSPKRIADLAETTLKSLHKKGWHAMTLFEVVLVY----WLWFGA 1700
+VQPCL+ITDIPC++APIA++ HP LL GGALPR+AEGQV+L FPS A+SA A+P+ VYA YAA +P PGVQ LDFR LL D+VE++R+++AA +A V SDWSSSPKRI++LAE TL SLH +GW+A+ LFEVVLV+ LW G+
Sbjct: 14 KVQPCLVITDIPCVLAPIADKNHPDLLDEGGALPRSAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFPSATASSALG-AQPVHNVYAVYAAAEPPPGVQAQLDFRTLLGHHSDMVEKDRQLRAAPDAEGDVTGASDWSSSPKRISELAENTLASLHNQGWYAIDLFEVVLVWRFLATLWRGS 196
BLAST of mRNA_C-linearis_contig100.696.1 vs. uniprot
Match: A0A6H5KTI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI3_9PHAE) HSP 1 Score: 144 bits (363), Expect = 1.060e-36 Identity = 64/103 (62.14%), Postives = 83/103 (80.58%), Query Frame = 2 Query: 509 RAMSSRIEDHNFHTMVLEAYFAFEALTEHVHDFVGYLHGRYPEILCVDGCAKMCSDDLSTEHFEVARVERDVDTDLQHELLKLSIISKMVFDGRLRWVVEAAP 817
R + IEDHNF ++ +AYFAFEAL +H FV ++HGR+PEI C+DGCAK+C+DD+S E F+ AR ERDVD DL +E+LK+S+ISKMVF+ RLRWV+EAAP
Sbjct: 9 RKSINSIEDHNFRALIKQAYFAFEALVQHPFGFVSFMHGRWPEIFCIDGCAKICTDDVSREQFDFARAERDVDADLHNEMLKMSMISKMVFNARLRWVLEAAP 111
BLAST of mRNA_C-linearis_contig100.696.1 vs. uniprot
Match: A0A6H5L2J5_9PHAE (CxC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J5_9PHAE) HSP 1 Score: 147 bits (370), Expect = 1.360e-36 Identity = 70/118 (59.32%), Postives = 84/118 (71.19%), Query Frame = 3 Query: 3 EGAIGGDTGFASYTQRTNPLEFAEKVAQLRAITVVYKFPVDEPELKPGTYGRKKIHVNTCFCTGCGERYHQLANGQATLLGQGTNGGAELRVVEFERKACTRCKLAGWAGDDIYEDGV 356
+GA G D G A+ Q +P+ F + +AQLR I+ VY+FPV EP LK GTYGR+ IHVN C CTGCGE Y +L +G+A LLGQG +LRVV ERK C RC L GWAGD+IYEDGV
Sbjct: 84 DGANGDDMGLATSIQTQDPVLFEQHMAQLRMISSVYRFPVCEPALKNGTYGRQTIHVNACLCTGCGEPYLKLPDGEAILLGQGARRKTDLRVVTVERKECRRCNLKGWAGDNIYEDGV 201 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.696.1 >prot_C-linearis_contig100.696.1 ID=prot_C-linearis_contig100.696.1|Name=mRNA_C-linearis_contig100.696.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=223bp MLLHRLRREVPSACQRPSNPSRPGDEWGGRTASGGVRAKGVHAVQAGRMGback to top mRNA from alignment at C-linearis_contig100:338518..345048- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig100.696.1 ID=mRNA_C-linearis_contig100.696.1|Name=mRNA_C-linearis_contig100.696.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6531bp|location=Sequence derived from alignment at C-linearis_contig100:338518..345048- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig100:338518..345048- >mRNA_C-linearis_contig100.696.1 ID=mRNA_C-linearis_contig100.696.1|Name=mRNA_C-linearis_contig100.696.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at C-linearis_contig100:338518..345048- (Chordaria linearis ClinC8C monoicous)back to top |