mRNA_C-linearis_contig100.695.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE) HSP 1 Score: 402 bits (1032), Expect = 1.780e-133 Identity = 204/322 (63.35%), Postives = 242/322 (75.16%), Query Frame = 2 Query: 2 GAGSGGADDAPPLRKIADLWKSEFLLISTHLREVLRVAIG------STSRSVGLAAMTLPGFVSDDILLKSQPEEGTGDNMEEGAGDTTPTRVLRDLGAAVELYHQTKVEYITGLL-QPADQDAFRRAHRLVQAGVGFGVAEHSVKALQIALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEPLMRSFDNVGKLRIT 946
G G G D+ PPLR+I++L +SE I+++L+ VLRVA+G +TS S+GL P F++DD+L E G D+ E A DT PT VLRDL VELYH+ K YIT LL D DA RA+RL+++GVGFGVAEHSVKALQIALSS+ +GG VGEDGKL GY I FNF+R D +GHFY KRVGLWL PDGPHEGNHQGSCQ +F GL+RC QITGTNCN HEQN++KK KFLPSV+G+GFDTFTFN+TLINELENV INRKTC LAV+SA+ H RL ACRKEVW+ GRCFC +PLMRSFD +GKL I+
Sbjct: 248 GEGGRGGDNTPPLREISELSRSELATITSYLKGVLRVAVGLAEATEATSLSLGL-----PEFLTDDVLYIEVAEGGAEDDTGEEADDTGPTPVLRDLEGIVELYHERKARYITRLLGAEPDGDASERAYRLIRSGVGFGVAEHSVKALQIALSSDCVGGGVGEDGKLPGYSIDFNFKRTPSYDNYGHFYGGKRVGLWLGPDGPHEGNHQGSCQAKFGGLTRCRQITGTNCNPHEQNHSKKIKFLPSVTGMGFDTFTFNVTLINELENVKINRKTCTLAVSSASGHPRHRLPACRKEVWSCGRCFCSKPLMRSFDKLGKLCIS 564
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE) HSP 1 Score: 382 bits (982), Expect = 7.760e-124 Identity = 198/321 (61.68%), Postives = 233/321 (72.59%), Query Frame = 2 Query: 2 GAGSGGADDAPPLRKIADLWKSEFLLISTHLREVLRVAIGSTSRSVGLAAMTLPGFVSDDILLKSQPEEGT----GDNMEEGAGDTTPTRVLRDLGAAVELYHQTKVEYITGLLQPADQDAFRRAHRLVQAGVGFGVAEHSVKALQIALSSESL---GGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEPLMRSFDNVGKLRI 943
G GGAD+ PP R+IADL E + IS HL E LRVAIGST + G M +P F+ DD+L SQ EG D++EEG G+ P VLR L V LYHQ KV + T LL D D+ RA+RLVQAGVGFGVAEHSV ALQ+ALSS+SL GGE+ +DGKL GYG+SFNF+R+R FGH YD +RVG+WL PDGPHEGNHQG CQ ++ G+SRCPQ TG NCN HEQN++KK+K LPSVSG+GFDTFTFNI LINELENV INRKT +AV+SAT + RL ACRKEVWT GRCFC +PLMRSFD ++
Sbjct: 227 GERGGGADEIPPEREIADLSTKELIDISGHLMETLRVAIGSTD-AAGWTMMCMPEFLGDDVLYYSQSMEGVIGGAVDDIEEGVGEAAP--VLRKLEDTVNLYHQKKVTFTTDLLAAVDNDSSERAYRLVQAGVGFGVAEHSVTALQMALSSDSLTIWGGELDKDGKLPGYGVSFNFKRERSFGEFGHCYDGQRVGVWLGPDGPHEGNHQGHCQMKYGGVSRCPQPTGVNCNAHEQNHSKKTKRLPSVSGMGFDTFTFNIILINELENVKINRKTWIVAVSSATELLYERLHACRKEVWTCGRCFCSKPLMRSFDQFDLFQM 544
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5K302_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K302_9PHAE) HSP 1 Score: 331 bits (849), Expect = 6.130e-111 Identity = 168/222 (75.68%), Postives = 178/222 (80.18%), Query Frame = 2 Query: 305 KVEYITGLLQPADQDAFRRAHRLVQAGVGFGVAEHSVKALQIALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEPLMRSFDNVGKLRITRA*PRDGM 970
+VEYI LLQPADQ A RA V HS A S GG VGEDGKLSGY ISFNFRR R+ +FGHFYD KRVGLWLAPDGPHEGNHQGSCQD FAGLS CPQI+GTNCNTHEQN+AKKSKFLPSVSG+GFDTFTFNITLINELENV+INRKTCNLAVASAT+H H RL ACRKEVWT GRCFCE PLMRSFDN+GKLRITRA +DGM
Sbjct: 2 QVEYIASLLQPADQHASERACESVG---------HS------AFWRLSRGG-VGEDGKLSGYDISFNFRRGREFSSFGHFYDNKRVGLWLAPDGPHEGNHQGSCQDMFAGLSSCPQISGTNCNTHEQNHAKKSKFLPSVSGMGFDTFTFNITLINELENVEINRKTCNLAVASATQHPHVRLHACRKEVWTYGRCFCENPLMRSFDNLGKLRITRASLQDGM 207
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5KLN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN2_9PHAE) HSP 1 Score: 305 bits (781), Expect = 1.520e-96 Identity = 167/336 (49.70%), Postives = 196/336 (58.33%), Query Frame = 2 Query: 2 GAGSGGADDAPPLRKIADLWKSEFLLISTHLREVLRVAIGSTSRSVGLAAMTLPGFVSDDILLKSQ-----------------------------------PEEGTGDNMEEGAGDTTPTRVLRDLGAAVELYHQTKVEYITGLLQPADQDAFRRAHRLVQAGVGFGVAEHSVKALQIALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEP 904
G GGAD+ PP R+IADL E L IS HL E LRVAIGST + GL M +P F+ DD+L Q P G D +EEG G+ P VLR L AV LYHQ +ALSS+SLGG++ ++GKL GYG+SFN +R+R FGHFYD +RVGLWL PDGP EGNHQG CQ ++ G+SRCPQ+TG NCN HEQN+ KK+K LPSVSG+GFDTFTFNITLINELENV INRKTC++AV+SA H H RL ACR+EVWT GRCFC EP
Sbjct: 203 GERGGGADETPPEREIADLSTKELLDISGHLIETLRVAIGSTD-AAGLTMMCMPEFLGDDVLYVLQSINGRSYRRSGRWHRGRCRRGCSGFEKIGGRRQPLPPGGAVDGIEEGVGEAAP--VLRKLEDAVNLYHQ------------------------------------------MALSSDSLGGQLDKNGKLPGYGVSFNLKRERSFGEFGHFYDGQRVGLWLGPDGPLEGNHQGPCQMKYGGVSRCPQLTGVNCNVHEQNHEKKTKHLPSVSGMGFDTFTFNITLINELENVKINRKTCSVAVSSAIEHPHERLYACRQEVWTCGRCFCSEP 493
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE) HSP 1 Score: 296 bits (758), Expect = 1.080e-91 Identity = 149/270 (55.19%), Postives = 185/270 (68.52%), Query Frame = 2 Query: 32 PPLRKIADLWKSEFLLISTHLREVLRVAIGSTSRSVGLAAMTLPGFVSDDILLKSQPEEGTGDNMEEGAGDTTPTRVLRDLGAAVELYHQTKVEYITGLLQPADQDAFRRAHRLVQAGVGFGVAEHSVKALQIALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSH 841
PP I DL ++E +I+ HL E+LRVA GS + GLA + +P FV + L S E LR L ++ YH TKV YIT LL D RA R ++AGVGFG AEHSVKALQ+ALSS+SLGG + + G+L GYGISF+F+R R +GHFYD KRVGLWLAPDGPHEGNHQG CQ++F GL+RCPQ+TG NCN HEQN++K K LPSV+G+GFDTF FN+ LINE E+ INRKTC+LAV+SAT+ ++
Sbjct: 352 PPESAITDLSRAELGMIAAHLMEILRVAAGSPPPARGLADVEVPSFVLEKYFLYSHAE------------------TLRPLEDVIDNYHNTKVSYITHLLGAKDDIRRERASRFIRAGVGFGEAEHSVKALQMALSSDSLGGGLDDHGRLPGYGISFHFQRFRSFGDYGHFYDGKRVGLWLAPDGPHEGNHQGKCQEKFGGLARCPQLTGVNCNAHEQNHSKNKKHLPSVNGMGFDTFNFNVNLINESEHRGINRKTCDLAVSSATQQAY 603
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5JIR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR9_9PHAE) HSP 1 Score: 280 bits (715), Expect = 4.180e-91 Identity = 126/173 (72.83%), Postives = 145/173 (83.82%), Query Frame = 2 Query: 428 IALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEPLMRSFDNVGKLRIT 946
+ALSS+SLGG+ +DGKL GYG+SFNF+R+R FGHFYD +RVGLWL PDGPHEGNHQG CQ + G+ RCPQ+TG NCN HEQN+ KK+K LPSVSG+GFDTFT+NITLINELENV INRKTC++AV+SA H H RL ACRKEVWT GRCFC +PLMRSFD GKLRIT
Sbjct: 1 MALSSDSLGGQFDKDGKLPGYGVSFNFKRERSFGEFGHFYDGQRVGLWLGPDGPHEGNHQGPCQMKDGGVFRCPQLTGVNCNVHEQNHEKKTKHLPSVSGMGFDTFTYNITLINELENVKINRKTCSVAVSSAIEHPHERLHACRKEVWTCGRCFCSKPLMRSFDQFGKLRIT 173
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5JV99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV99_9PHAE) HSP 1 Score: 253 bits (646), Expect = 4.070e-78 Identity = 112/157 (71.34%), Postives = 130/157 (82.80%), Query Frame = 2 Query: 476 KLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEPLMRSFDNVGKLRIT 946
KL GYG+SFNF+R+R FGHFYD +RVGLWL PDGPHEGNHQG CQ ++ G SRCPQ+TG NCN HEQ ++KK + LPS S +GFDTFTFNITLIN+LENV INRKTC++AV+SAT H H RL ACRKEVWT GRCFC +PL+RSFD G+LRIT
Sbjct: 199 KLPGYGVSFNFKRERSFGKFGHFYDGQRVGLWLGPDGPHEGNHQGPCQMKYGGESRCPQLTGVNCNVHEQKHSKKPRHLPSGSVMGFDTFTFNITLINDLENVKINRKTCSVAVSSATEHPHERLHACRKEVWTCGRCFCSKPLIRSFDQFGELRIT 355
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5JBW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW4_9PHAE) HSP 1 Score: 222 bits (565), Expect = 3.480e-68 Identity = 101/135 (74.81%), Postives = 117/135 (86.67%), Query Frame = 2 Query: 380 AGVGFGVAEHSVKALQIALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNHQGSCQDRFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENV 784
A VGFGVAEHSVKALQ ALSS+SLGG++ +DG+L GYG+S NF R+R FGHFYD +RVGLWL PDGPHEGNHQGSCQ ++ G+SRCPQ+TG NCN HEQN++KK+K LPSVSG+GFDTFT NITLINELENV
Sbjct: 18 AWVGFGVAEHSVKALQRALSSDSLGGQLDKDGQLPGYGVSLNFNRERSFGEFGHFYDGQRVGLWLGPDGPHEGNHQGSCQMKYGGVSRCPQLTGVNCNVHEQNHSKKTKHLPSVSGMGFDTFTLNITLINELENV 152
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5KBD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD1_9PHAE) HSP 1 Score: 224 bits (570), Expect = 1.040e-66 Identity = 120/198 (60.61%), Postives = 142/198 (71.72%), Query Frame = 2 Query: 23 DDAPPLRKIADLWKSEFLLISTHLREVLRVAIGSTSRSVGLAAMTLPGFVSDDILLKSQPEEG-TG---DNMEEGAGDTTPTRVLRDLGAAVELYHQTKVEYITGLLQPADQDAFRRAHRLVQAGVGFGVAEHSVKALQIALSSESLGGEVGEDGKLSGYGISFNFRRDRQLDAFGHFYDKKRVGLWLAPDGPHEGNH 604
D+ PP R+IAD+ E L IS HL E LRVAIGST + GL M +P F+ DD+L SQ EG TG D++EEG G+ P VLR L AV+L+HQ KV +IT L D D RA RLVQA VGFGVAEHSVKAL +ALSS+SLGGE+ +DGKL G+G+SFNF+R+R FGHFYD +RVGLWL PDGPHEGNH
Sbjct: 165 DETPPEREIADVSTKELLDISGHLMETLRVAIGSTD-AAGLTMMCMPEFLGDDVLYYSQSMEGVTGGAVDDIEEGVGEAAP--VLRKLEDAVDLFHQKKVTFITDSLDAVDHDTSERACRLVQARVGFGVAEHSVKALHMALSSDSLGGELDKDGKLPGHGVSFNFKRERSFGEFGHFYDGQRVGLWLGPDGPHEGNH 359
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Match: A0A6H5K6F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6F2_9PHAE) HSP 1 Score: 179 bits (453), Expect = 1.630e-52 Identity = 81/108 (75.00%), Postives = 94/108 (87.04%), Query Frame = 2 Query: 623 RFAGLSRCPQITGTNCNTHEQNYAKKSKFLPSVSGVGFDTFTFNITLINELENVDINRKTCNLAVASATRHSHARLLACRKEVWTMGRCFCEEPLMRSFDNVGKLRIT 946
++ G+SRCPQ+TG NCN HEQN++KK++ LPSVSG+GFDTFTFNITLINELENV INRKTC++AV+SAT H H RL ACRKEV T GRCFC +PLMRSFD GKLRIT
Sbjct: 2 KYGGVSRCPQLTGVNCNVHEQNHSKKTEHLPSVSGMGFDTFTFNITLINELENVKINRKTCSVAVSSATEHPHERLHACRKEVSTCGRCFCSKPLMRSFDQFGKLRIT 109 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig100.695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.695.1 >prot_C-linearis_contig100.695.1 ID=prot_C-linearis_contig100.695.1|Name=mRNA_C-linearis_contig100.695.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=268bp MTLPGFVSDDILLKSQPEEGTGDNMEEGAGDTTPTRVLRDLGAAVELYHQback to top mRNA from alignment at C-linearis_contig100:336798..338485- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig100.695.1 ID=mRNA_C-linearis_contig100.695.1|Name=mRNA_C-linearis_contig100.695.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1688bp|location=Sequence derived from alignment at C-linearis_contig100:336798..338485- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig100:336798..338485- >mRNA_C-linearis_contig100.695.1 ID=mRNA_C-linearis_contig100.695.1|Name=mRNA_C-linearis_contig100.695.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at C-linearis_contig100:336798..338485- (Chordaria linearis ClinC8C monoicous)back to top |