Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 573 |
| Cds size | 303 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927353.1109571-CDS-C-linearis_contig100:24819..25122 | 1622927353.1109571-CDS-C-linearis_contig100:24819..25122 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig100 24820..25122 + |
| 1690879647.07529-CDS-C-linearis_contig100:24819..25122 | 1690879647.07529-CDS-C-linearis_contig100:24819..25122 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig100 24820..25122 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927353.1224368-UTR-C-linearis_contig100:25122..25392 | 1622927353.1224368-UTR-C-linearis_contig100:25122..25392 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig100 25123..25392 + |
| 1690879647.0910573-UTR-C-linearis_contig100:25122..25392 | 1690879647.0910573-UTR-C-linearis_contig100:25122..25392 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig100 25123..25392 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig100.680.1 >prot_C-linearis_contig100.680.1 ID=prot_C-linearis_contig100.680.1|Name=mRNA_C-linearis_contig100.680.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=101bp
VRNNCLEKTKCFSLPHPFPAQPFSGPVEWPLTADDTQALQSGLKRKSITE
TRLFAGNPRRNKICARHTTVTQKRSTTRTKKNTHPRFQERCPKAMALLQS
* back to topmRNA from alignment at C-linearis_contig100:24820..25392+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig100.680.1 ID=mRNA_C-linearis_contig100.680.1|Name=mRNA_C-linearis_contig100.680.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=573bp|location=Sequence derived from alignment at C-linearis_contig100:24820..25392+ (Chordaria linearis ClinC8C monoicous)
GTTCGAAATAACTGCCTTGAAAAAACGAAATGTTTCTCTCTTCCCCACCC
CTTTCCTGCGCAACCCTTCTCCGGGCCGGTTGAGTGGCCGCTAACAGCAG
ACGACACCCAAGCGCTGCAATCAGGATTGAAACGCAAATCCATCACCGAA
ACTCGGTTGTTCGCTGGAAACCCACGCCGCAATAAAATATGCGCACGCCA
CACCACGGTCACGCAAAAAAGAAGCACAACACGGACAAAAAAAAACACGC
ATCCCCGTTTTCAGGAGCGATGTCCAAAGGCCATGGCGCTTCTTCAATCT
TGAAACGGCCTTTGACGGTTCGGCGGCTTGACTTTGCTCGAACCTTTCGC
CAATAATGCACGGTCCCCTCATCCAAGAATGAAAATCCTGACTATTGATA
CGTCGCAGTGTGGAGAAAAGAGCCAACGCCTCCAACCACAGGCTAGGACG
AGTGAAGCAAACAAAAAACATGCGATAAAACAGTAAAAAAGAACGCTTCA
AAACATGAAAGAATGTATAGACTATGCTGCGAAATTTATGACATTGAGGT
AACAACAACACGGGCCGCCGAAG back to topCoding sequence (CDS) from alignment at C-linearis_contig100:24820..25392+ >mRNA_C-linearis_contig100.680.1 ID=mRNA_C-linearis_contig100.680.1|Name=mRNA_C-linearis_contig100.680.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at C-linearis_contig100:24820..25392+ (Chordaria linearis ClinC8C monoicous)
GTTCGAAATAACTGCCTTGAAAAAACGAAATGTTTCTCTCTTCCCCACCC
CTTTCCTGCGCAACCCTTCTCCGGGCCGGTTGAGTGGCCGCTAACAGCAG
ACGACACCCAAGCGCTGCAATCAGGATTGAAACGCAAATCCATCACCGAA
ACTCGGTTGTTCGCTGGAAACCCACGCCGCAATAAAATATGCGCACGCCA
CACCACGGTCACGCAAAAAAGAAGCACAACACGGACAAAAAAAAACACGC
ATCCCCGTTTTCAGGAGCGATGTCCAAAGGCCATGGCGCTTCTTCAATCT
TGAGTTCGAAATAACTGCCTTGAAAAAACGAAATGTTTCTCTCTTCCCCA
CCCCTTTCCTGCGCAACCCTTCTCCGGGCCGGTTGAGTGGCCGCTAACAG
CAGACGACACCCAAGCGCTGCAATCAGGATTGAAACGCAAATCCATCACC
GAAACTCGGTTGTTCGCTGGAAACCCACGCCGCAATAAAATATGCGCACG
CCACACCACGGTCACGCAAAAAAGAAGCACAACACGGACAAAAAAAAACA
CGCATCCCCGTTTTCAGGAGCGATGTCCAAAGGCCATGGCGCTTCTTCAA
TCTTGA back to top
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