mRNA_C-linearis_contig10.673.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.673.1
Unique NamemRNA_C-linearis_contig10.673.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE)

HSP 1 Score: 464 bits (1193), Expect = 2.120e-158
Identity = 215/275 (78.18%), Postives = 246/275 (89.45%), Query Frame = 3
Query:  354 FVVSGRVGLCVLLYRLSFPTRLNGMRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLAQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
            FVVSGR  LCVLLYRL+FP RL  MRLVFG+SES ICE FN MLHFLD++ G+LL L+V R++P L EFAEA++NSG PLT+CWGFIDGTVRGIARP  +QRLFYNGHKRKHAMKFQGVI PDG+FVD+WGPV GTRHD+++LAQSGLMEKL+ LNSP+GHPYCLYGDPAYG+SNHL+CPFSA SVG  L+P M  FNKRMSHCRVTVEWGFKE+TGK++FV++KPQQKFL+SPVAKQYRVATLLSN HSC+NGG+EISQYFGV PPT EEY+ V
Sbjct:   57 FVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIARPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGP-LTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 330          
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: D8LL85_ECTSI (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LL85_ECTSI)

HSP 1 Score: 441 bits (1135), Expect = 2.600e-149
Identity = 207/276 (75.00%), Postives = 243/276 (88.04%), Query Frame = 3
Query:  354 FVVSGRVGLCVLLYRLSFPTRLNGMRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLA-QLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
            F VSGR  LCVLLYRL+FP RL  MRLVFG+SES I ETFN MLHFL++K G+LL L+V+R+KPRL EFAEA+YN+  PLT+CWGFIDGTVRGIARPVRFQR +YNGHKRKHA+KFQGVI PDG+FVD+WGPV+GTRHD+Y+LAQSGLM+KLA   NSPSGHPYCLYGDPAYG+S+HL CPFSA S  G L+P M  FN+RMSHCRV VEWGFKE+T K++FV++KPQQK+L+SPV KQY VATLLSN+HSCLNGG++ISQ+F V PPTL+EYL+V
Sbjct:   76 FAVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCISETFNWMLHFLEFKWGWLLSLDVERLKPRLVEFAEAIYNADCPLTHCWGFIDGTVRGIARPVRFQRWYYNGHKRKHAIKFQGVITPDGLFVDMWGPVLGTRHDSYLLAQSGLMQKLATHSNSPSGHPYCLYGDPAYGLSDHLACPFSASS-HGPLTPDMADFNQRMSHCRVAVEWGFKEMTSKWTFVDMKPQQKYLLSPVGKQYLVATLLSNIHSCLNGGNQISQFFDVQPPTLQEYLKV 350          
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5KLS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLS3_9PHAE)

HSP 1 Score: 431 bits (1109), Expect = 1.610e-140
Identity = 207/275 (75.27%), Postives = 231/275 (84.00%), Query Frame = 3
Query:  354 FVVSGRVGLCVLLYRLSFPTRLNGMRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLAQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
            FVVSGR  LCVLLYR++FP RL  M LVFGMSESRICE F  MLHFLD+K GFLL L V+ ++ RL EFAEAVYN+G PL  CWGFIDGTVRGIARP R+QRLFYN HK KHA KFQGV+ PDG+F D+WGPVVGTRHDNY+LAQSGLM+KLA LNSPSG PY LYGDPAYG+SNHLICPFSA SVG  L+P +  FNKR+S CRVTVEWGFKE+   ++FVN+K QQK L+SPVA QYRVATLLSN HSCLNGG+EISQYFGV PP+ EEYL V
Sbjct:  424 FVVSGREALCVLLYRMAFPCRLKDMPLVFGMSESRICEAFKWMLHFLDFKWGFLLSLSVESVQLRLLEFAEAVYNAGCPLPRCWGFIDGTVRGIARPKRWQRLFYNDHKGKHAFKFQGVVTPDGLFADLWGPVVGTRHDNYILAQSGLMQKLAMLNSPSGQPYYLYGDPAYGLSNHLICPFSASSVGP-LTPEVADFNKRISACRVTVEWGFKEICNYWAFVNMKQQQKSLLSPVAVQYRVATLLSNWHSCLNGGNEISQYFGVGPPSFEEYLGV 697          
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE)

HSP 1 Score: 412 bits (1059), Expect = 8.810e-137
Identity = 196/276 (71.01%), Postives = 231/276 (83.70%), Query Frame = 3
Query:  354 FVVSGRVGLCVLLYRLSFPTRLNGMRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKL-AQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
            FVV GR  LCVLLYRL+FP  L  MRL FG+SES ICETFN MLHF+D+K GFLL L+V R+ P+L  FAEAVYN G PLT+CW FIDGTVRGIARP+R +R FYNG+KRKHA+KFQGV+ PDG+FVD++   VGT HD Y+LA+S L+EKL   +NSPSGHPYC+YGDPAYG ++H+ CPFSA SV G L+PAM  FNK MS CRVTVEWGFKE+T K++FV++K QQKFL+SPVA QY+VATLLSN HSCLNGG++ISQYFGV PPTLEEYL+V
Sbjct:  146 FVVGGREALCVLLYRLAFPCCLKDMRLDFGLSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIARPIRNKRFFYNGYKRKHAIKFQGVVTPDGLFVDLYDAEVGTTHDGYLLAESTLLEKLQTHMNSPSGHPYCVYGDPAYGQTDHIQCPFSA-SVNGPLTPAMRKFNKSMSQCRVTVEWGFKEMTSKWAFVDMKCQQKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYLKV 420          
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5KH29_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH29_9PHAE)

HSP 1 Score: 409 bits (1050), Expect = 1.340e-135
Identity = 197/277 (71.12%), Postives = 234/277 (84.48%), Query Frame = 3
Query:  354 FVVSGRVGLCVLLYRLSFPTRLNGMRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLY-EFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLA-QLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
            F+VSGR  LCVLLYRL+FP RL  MRLVFG+SES ICETFNRMLHFLD+K G+LL ++V+R+KPRL  EFAEA+YN+G PLT+CWGFID T+RGIAR     RL        HA+KFQGV+ PDG+FVD+WG V+GTRHD+Y+LAQSGLM+KLA   NSPSG PYCLYGDPAYG+S+HL+CPFSA S G  L+P M  FN+RMSHCRVTVEWGFKE+T K++FV++K QQK+L+SPV KQYRVATLLSNMHSCLNGG++ISQYF + PPTLEEYL+V
Sbjct:  137 FIVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICETFNRMLHFLDFKWGWLLSVDVERLKPRLLVEFAEAIYNAGCPLTHCWGFIDETIRGIARV----RLADTHQLSIHAIKFQGVVTPDGLFVDLWGLVLGTRHDSYLLAQSGLMQKLAAHFNSPSGRPYCLYGDPAYGLSDHLVCPFSAASYGP-LTPEMADFNQRMSHCRVTVEWGFKEMTSKWAFVDMKSQQKYLLSPVGKQYRVATLLSNMHSCLNGGNQISQYFNLQPPTLEEYLKV 408          
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5L370_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L370_9PHAE)

HSP 1 Score: 400 bits (1028), Expect = 1.100e-133
Identity = 194/275 (70.55%), Postives = 225/275 (81.82%), Query Frame = 3
Query:  357 VVSGRVGLCVLLYRLSFPTRLNGMRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKL-AQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
            VV GR  LCVLLYRL+FP RL  MRLVFG+SES ICETFN MLH +D K  FLL L+V R+ P+L  FAEAVYN G PLT+CW FIDGTVRGIARP+R QR FY+G+KRKHA+KFQGV+ PDG+  D++   VGTRHD Y+LAQS L+EKL   +NSPSGHPYCL+GDPAYG ++H+ CPFSA SV G+LS AM  FNK MS  RVTVEWGFKE+T K++FV +K QQKFL+SPVA QY VATLLSN HSCLNGG++ISQYFGV PPTLEEYL+V
Sbjct:   41 VVGGREALCVLLYRLAFPCRLKDMRLVFGLSESCICETFNWMLHIMDVKLRFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIARPIRNQRFFYSGYKRKHAIKFQGVVTPDGLIDDLYAAEVGTRHDGYLLAQSALLEKLQTHMNSPSGHPYCLHGDPAYGQTDHVQCPFSA-SVNGLLSSAMRNFNKSMSQRRVTVEWGFKEMTSKWAFVGMKCQQKFLLSPVATQYNVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYLKV 314          
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5JJ08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ08_9PHAE)

HSP 1 Score: 401 bits (1030), Expect = 3.580e-133
Identity = 186/248 (75.00%), Postives = 216/248 (87.10%), Query Frame = 3
Query:  435 VFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLAQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
            VFG+SES ICE FN MLHFLD++ G+LL L+V R++  L EFAEA++NS   LT+CWGFIDGTVRGIARP  +QR+FYNGHKRKHAMKFQGVI PDG+FVD+WGPV GTRHD+++LAQSGLMEKL+ LNSP+GHPYCLYGDPAYG+SN+L+CPFSA SVG   +P M  FNKRMSHCRVTVEWGFKE+TGK+  VN+KPQQKF +SP+AKQYRVATLLSN HSC+NGG+EISQYFGV P T EEYL V
Sbjct:  122 VFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQLHLIEFAEAIFNSCCRLTHCWGFIDGTVRGIARPKYWQRMFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNYLVCPFSASSVGP-RTPEMADFNKRMSHCRVTVEWGFKEMTGKWVLVNMKPQQKFSLSPIAKQYRVATLLSNWHSCMNGGNEISQYFGVVPLTFEEYLAV 368          
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5KY46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY46_9PHAE)

HSP 1 Score: 362 bits (929), Expect = 5.110e-120
Identity = 166/212 (78.30%), Postives = 188/212 (88.68%), Query Frame = 3
Query:  543 PRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLAQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
            P L EFAEA++NSG PLT+CWGFIDGTVRGIARP  +QRLFYNGHKRKHAMKFQGVI PDG+FVD+WGPV GTRH +++LAQ GLMEKL+  NSP GHPY LYGDPAYG+SNHL+CPFSA S G  L+P M  FNKRMSHCRVTVEWGFKE+TGK++FV++KPQQKFL+SPVAKQYRVATLLSN HSC+NGG+EISQYFGV PPT EEY+ V
Sbjct:   20 PHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIARPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHHSFILAQFGLMEKLSMQNSPIGHPYYLYGDPAYGLSNHLVCPFSASSAGP-LTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 230          
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5JR24_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR24_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 3.640e-116
Identity = 173/246 (70.33%), Postives = 198/246 (80.49%), Query Frame = 3
Query:  447 SESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLAQ--LNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
            SES ICE FN MLHFLD++ G+LL L+V R++P L EFAEAV NSG PLT+CWGFIDGTVRGIA+P  +QRLFYNGHKRKHAMKFQG+                     Y +AQSGLMEKL+    NSP+GHPYCLYGDPAYG+SNHL+CPFSA SVG  L+P M  FNKRMSHCRVTVEWGFKE+TGK++FV++KPQQKFL+SPVAKQYRVATLLSN HSC+NGG+EISQYFGV PPT EEY+ V
Sbjct:   52 SESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAVVNSGCPLTHCWGFIDGTVRGIAKPKYWQRLFYNGHKRKHAMKFQGL---------------------YSIAQSGLMEKLSMPNSNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGP-LTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 275          
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5K0J0_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J0_9PHAE)

HSP 1 Score: 353 bits (906), Expect = 3.760e-116
Identity = 172/248 (69.35%), Postives = 199/248 (80.24%), Query Frame = 3
Query:  426 MRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGI--ARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLAQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLE 1163
            MRLVFGMSES ICE FN MLHFLD++ G+LL L+V R++P L EFAE +                TV  +  A P  +QRLFYNGHKRKHAMKFQG+I PDG+FVD+WGPV GTRHD+++LAQSGLMEKL+ LNSP+GHPYCLYGDPAYG+ NHL+CPFSA SVG   +P M  FNKR SHCRVTVEWGFKE+TGK++FVN+KPQQKFL+SPVAKQYRVATLLSN HSC+NGG+EI QYFGV P T E
Sbjct:   25 MRLVFGMSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEXL----------------TVGDLSMAPPKYWQRLFYNGHKRKHAMKFQGIITPDGLFVDLWGPVAGTRHDSFMLAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLRNHLVCPFSASSVGP-FTPEMADFNKRTSHCRVTVEWGFKEMTGKWAFVNMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEIWQYFGVVPSTFE 255          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KB08_9PHAE2.120e-15878.18DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
D8LL85_ECTSI2.600e-14975.00DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5KLS3_9PHAE1.610e-14075.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS57_9PHAE8.810e-13771.01DDE Tnp4 domain-containing protein n=4 Tax=Ectocar... [more]
A0A6H5KH29_9PHAE1.340e-13571.12DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L370_9PHAE1.100e-13370.55DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5JJ08_9PHAE3.580e-13375.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KY46_9PHAE5.110e-12078.30DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JR24_9PHAE3.640e-11670.33DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K0J0_9PHAE3.760e-11669.35DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3596729..3598844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score409.5
Seed ortholog evalue1.2e-111
Seed eggNOG ortholog2880.D7G105
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DDE superfamily endonuclease
EggNOG OGs2AWDH@1,2RZYI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1666
Cds size756
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.673.1prot_C-linearis_contig10.673.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3597358..3598359 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927352.2402856-UTR-C-linearis_contig10:3596728..35970201622927352.2402856-UTR-C-linearis_contig10:3596728..3597020Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3596729..3597020 +
1690879646.398722-UTR-C-linearis_contig10:3596728..35970201690879646.398722-UTR-C-linearis_contig10:3596728..3597020Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3596729..3597020 +
1622927352.255295-UTR-C-linearis_contig10:3597224..35973571622927352.255295-UTR-C-linearis_contig10:3597224..3597357Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3597225..3597357 +
1690879646.4091508-UTR-C-linearis_contig10:3597224..35973571690879646.4091508-UTR-C-linearis_contig10:3597224..3597357Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3597225..3597357 +
1622927352.292253-UTR-C-linearis_contig10:3598359..35988441622927352.292253-UTR-C-linearis_contig10:3598359..3598844Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3598360..3598844 +
1690879646.4380026-UTR-C-linearis_contig10:3598359..35988441690879646.4380026-UTR-C-linearis_contig10:3598359..3598844Chordaria linearis ClinC8C monoicousUTRC-linearis_contig10 3598360..3598844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927352.267658-CDS-C-linearis_contig10:3597357..35975721622927352.267658-CDS-C-linearis_contig10:3597357..3597572Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3597358..3597572 +
1690879646.4176085-CDS-C-linearis_contig10:3597357..35975721690879646.4176085-CDS-C-linearis_contig10:3597357..3597572Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3597358..3597572 +
1622927352.2819097-CDS-C-linearis_contig10:3597818..35983591622927352.2819097-CDS-C-linearis_contig10:3597818..3598359Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3597819..3598359 +
1690879646.4279406-CDS-C-linearis_contig10:3597818..35983591690879646.4279406-CDS-C-linearis_contig10:3597818..3598359Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3597819..3598359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.673.1

>prot_C-linearis_contig10.673.1 ID=prot_C-linearis_contig10.673.1|Name=mRNA_C-linearis_contig10.673.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=252bp
MRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVY
NSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDG
IFVDVWGPVVGTRHDNYVLAQSGLMEKLAQLNSPSGHPYCLYGDPAYGIS
NHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNL
KPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLR
V*
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mRNA from alignment at C-linearis_contig10:3596729..3598844+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.673.1 ID=mRNA_C-linearis_contig10.673.1|Name=mRNA_C-linearis_contig10.673.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2116bp|location=Sequence derived from alignment at C-linearis_contig10:3596729..3598844+ (Chordaria linearis ClinC8C monoicous)
AGGGTTGCTGGGTTGCTGGCTTCGCTCACAACTGGAAATCGGGTCGTCAT GTCTCGTTTGCGCATTCGCGAAAGGGTAGCGCGAAAACGACGAGCACTAC GTAGTCGTGCTGGCGTGCAGGTCCTACTGTGACCAGTTTTCGAGCCTGTG GTTCGCGTACAACCTGGCCTTCATCTATGCCATCGCCCGCCTAGCCATCG ACGACACACCAACCGATCTTGCTCGGAGGGATGTATCTGTATTCTTCAGC CCTCAGGACTGCATCAACTTCCTGCGCTTTACGCAATCAGAGGTGCGAAG AAAACATGACTGCAATCTCAACTTGCGTCAACCACAAAATAGTTGCTCTC CTCTCTGTGTGGGCCCAGCGGGCTGTATTTAGTGCCGGAGCTTGTACGTA CTCAAAATCTCTCTCGAATCATAGGAGTAGAGCTGGGAAAAGGGCAGAGG ACATACATATCTTTTTCTTTTTGTATCTGCGAACGTGATGCGACAGATCA TGCTGCTGTTGGAGCTGCTCCTGATTCCGGCGTTCATCTGGACCGACTGC GGATTTATTTGTAGTCAGCGGTCGTGTGGGTCTGTGTGTACTCCTGTACC GGCTGTCTTTTCCGACCCGCCTCAATGGCATGCGACTGGTTTTTGGGATG AGCGAGTCTCGCATATGCGAGACGTTCAACAGGATGCTGCACTTCCTCGA CTACAAGCGGGGATTTCTGCTCGAACTGGAAGTGGACCGGATCAAGCCGC GACTGTACGAGTTTGCCGAAGCTGTGTACAACTCCGGTTCTCCTCTGACC TACTGTTGGGGCTTCATCGATGGCACCGTGAGGGGGATTGCAAGGTGTGC TTAAGCAGCATAGGGAATTAGAGTGTTTCAATGCTTAACAGATACAGATA CCGCACTGTCTACTGTTGTTCTGGCCCTGTACCCAAAGAAAGTCAGAGGC GTTGTCCACATATTTTCAAGTGCATCTCGCTCTTTATTTTTACCTCTCCA TGGGCTGTGCAGCGCTGTTTTCGGCGGAGGTATGTTTTCGTTCACTGACG TAGATGTCTTGTCCGCCCGTTCCGTTGTCGTGTCTTCCAGGCCTGTCCGA TTCCAACGCTTGTTCTACAACGGCCACAAGAGAAAGCATGCGATGAAGTT CCAAGGCGTCATAGCGCCGGACGGGATTTTCGTCGATGTGTGGGGCCCGG TGGTGGGCACCCGCCACGACAACTATGTTCTAGCGCAGTCGGGGTTGATG GAGAAGTTGGCCCAACTCAACAGCCCTTCAGGCCACCCGTACTGTTTGTA TGGAGACCCGGCGTATGGAATCAGCAACCATCTGATCTGCCCTTTCAGTG CAGTCAGTGTTGGCGGCGTTCTTTCGCCCGCAATGATCGCCTTTAACAAG CGGATGAGCCATTGCCGCGTGACCGTAGAGTGGGGGTTCAAGGAGGTGAC AGGCAAATTTTCTTTCGTCAACCTCAAGCCGCAGCAGAAGTTTCTCATGA GCCCTGTGGCCAAGCAGTACAGGGTTGCCACCCTGTTGTCAAACATGCAC TCGTGTCTCAACGGGGGGCACGAAATCTCTCAGTATTTCGGCGTGTCGCC GCCCACTCTGGAAGAGTACCTGCGAGTGTAGGCGAGCTAGTGTAGGCACT TGGCGACTGGATGAGCCAGTTCCTCTCTTGGGGCGTTTGGAGCATTGGTC GATAGTGGTACTGTGCTGATTGCGCTTTCCACATGACGTTTGGGGGGGGT GTATGCTGCTTGTGGTTTGTTTCGTTGGTTGGCGTCTGCGGCCGCGTGTA TGGATACGTTGCCGCTGATGGGCTCTACGATTGGTGACGTTGTTGATAAA TTGAGGAGCCCCGCGTTCGAGGGTGCACTTTTTCTTGCGCACTTGCGCCC AACGGCTCTTCAAAAATAAACCATTGCACACCAAAGTCTCTACCGCCCTG GTTCGGCGAGGCAGTATTTTACCAGCACAAAAAACCACAGCCATTTTTTC CACCACAAAAAATCGCACAAGACGCAGACGGATGTCACGTTTTTCCGTGG TGCCTACTGAGAGAGAGAGCACCGCTCACATTTACCTACCCCTACCACAA AAGAATCGGACTTGAT
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Coding sequence (CDS) from alignment at C-linearis_contig10:3596729..3598844+

>mRNA_C-linearis_contig10.673.1 ID=mRNA_C-linearis_contig10.673.1|Name=mRNA_C-linearis_contig10.673.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at C-linearis_contig10:3596729..3598844+ (Chordaria linearis ClinC8C monoicous)
ATGCGACTGGTTTTTGGGATGAGCGAGTCTCGCATATGCGAGACGTTCAA
CAGGATGCTGCACTTCCTCGACTACAAGCGGGGATTTCTGCTCGAACTGG
AAGTGGACCGGATCAAGCCGCGACTGTACGAGTTTGCCGAAGCTGTGTAC
AACTCCGGTTCTCCTCTGACCTACTGTTGGGGCTTCATCGATGGCACCGT
GAGGGGGATTGCAAGATGCGACTGGTTTTTGGGATGAGCGAGTCTCGCAT
ATGCGAGACGTTCAACAGGATGCTGCACTTCCTCGACTACAAGCGGGGAT
TTCTGCTCGAACTGGAAGTGGACCGGATCAAGCCGCGACTGTACGAGTTT
GCCGAAGCTGTGTACAACTCCGGTTCTCCTCTGACCTACTGTTGGGGCTT
CATCGATGGCACCGTGAGGGGGATTGCAAGGCCTGTCCGATTCCAACGCT
TGTTCTACAACGGCCACAAGAGAAAGCATGCGATGAAGTTCCAAGGCGTC
ATAGCGCCGGACGGGATTTTCGTCGATGTGTGGGGCCCGGTGGTGGGCAC
CCGCCACGACAACTATGTTCTAGCGCAGTCGGGGTTGATGGAGAAGTTGG
CCCAACTCAACAGCCCTTCAGGCCACCCGTACTGTTTGTATGGAGACCCG
GCGTATGGAATCAGCAACCATCTGATCTGCCCTTTCAGTGCAGTCAGTGT
TGGCGGCGTTCTTTCGCCCGCAATGATCGCCTTTAACAAGCGGATGAGCC
ATTGCCGCGTGACCGTAGAGTGGGGGTTCAAGGAGGTGACAGGCAAATTT
TCTTTCGTCAACCTCAAGCCGCAGCAGAAGTTTCTCATGAGCCCTGTGGC
CAAGCAGTACAGGGTTGCCACCCTGTTGTCAAACATGCACTCGTGTCTCA
ACGGGGGGCACGAAATCTCTCAGTATTTCGGCGTGTCGCCGCCCACTCTG
GAAGAGTACCTGCGAGTGTAGGCCTGTCCGATTCCAACGCTTGTTCTACA
ACGGCCACAAGAGAAAGCATGCGATGAAGTTCCAAGGCGTCATAGCGCCG
GACGGGATTTTCGTCGATGTGTGGGGCCCGGTGGTGGGCACCCGCCACGA
CAACTATGTTCTAGCGCAGTCGGGGTTGATGGAGAAGTTGGCCCAACTCA
ACAGCCCTTCAGGCCACCCGTACTGTTTGTATGGAGACCCGGCGTATGGA
ATCAGCAACCATCTGATCTGCCCTTTCAGTGCAGTCAGTGTTGGCGGCGT
TCTTTCGCCCGCAATGATCGCCTTTAACAAGCGGATGAGCCATTGCCGCG
TGACCGTAGAGTGGGGGTTCAAGGAGGTGACAGGCAAATTTTCTTTCGTC
AACCTCAAGCCGCAGCAGAAGTTTCTCATGAGCCCTGTGGCCAAGCAGTA
CAGGGTTGCCACCCTGTTGTCAAACATGCACTCGTGTCTCAACGGGGGGC
ACGAAATCTCTCAGTATTTCGGCGTGTCGCCGCCCACTCTGGAAGAGTAC
CTGCGAGTGTAG
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