mRNA_C-linearis_contig10.673.1 (mRNA) Chordaria linearis ClinC8C monoicous
|
Overview
Homology
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5KB08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB08_9PHAE) HSP 1 Score: 464 bits (1193), Expect = 2.120e-158 Identity = 215/275 (78.18%), Postives = 246/275 (89.45%), Query Frame = 3
Query: 354 FVVSGRVGLCVLLYRLSFPTRLNGMRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLAQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
FVVSGR LCVLLYRL+FP RL MRLVFG+SES ICE FN MLHFLD++ G+LL L+V R++P L EFAEA++NSG PLT+CWGFIDGTVRGIARP +QRLFYNGHKRKHAMKFQGVI PDG+FVD+WGPV GTRHD+++LAQSGLMEKL+ LNSP+GHPYCLYGDPAYG+SNHL+CPFSA SVG L+P M FNKRMSHCRVTVEWGFKE+TGK++FV++KPQQKFL+SPVAKQYRVATLLSN HSC+NGG+EISQYFGV PPT EEY+ V
Sbjct: 57 FVVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIARPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGP-LTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 330
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: D8LL85_ECTSI (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D8LL85_ECTSI) HSP 1 Score: 441 bits (1135), Expect = 2.600e-149 Identity = 207/276 (75.00%), Postives = 243/276 (88.04%), Query Frame = 3
Query: 354 FVVSGRVGLCVLLYRLSFPTRLNGMRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLA-QLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
F VSGR LCVLLYRL+FP RL MRLVFG+SES I ETFN MLHFL++K G+LL L+V+R+KPRL EFAEA+YN+ PLT+CWGFIDGTVRGIARPVRFQR +YNGHKRKHA+KFQGVI PDG+FVD+WGPV+GTRHD+Y+LAQSGLM+KLA NSPSGHPYCLYGDPAYG+S+HL CPFSA S G L+P M FN+RMSHCRV VEWGFKE+T K++FV++KPQQK+L+SPV KQY VATLLSN+HSCLNGG++ISQ+F V PPTL+EYL+V
Sbjct: 76 FAVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCISETFNWMLHFLEFKWGWLLSLDVERLKPRLVEFAEAIYNADCPLTHCWGFIDGTVRGIARPVRFQRWYYNGHKRKHAIKFQGVITPDGLFVDMWGPVLGTRHDSYLLAQSGLMQKLATHSNSPSGHPYCLYGDPAYGLSDHLACPFSASS-HGPLTPDMADFNQRMSHCRVAVEWGFKEMTSKWTFVDMKPQQKYLLSPVGKQYLVATLLSNIHSCLNGGNQISQFFDVQPPTLQEYLKV 350
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5KLS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLS3_9PHAE) HSP 1 Score: 431 bits (1109), Expect = 1.610e-140 Identity = 207/275 (75.27%), Postives = 231/275 (84.00%), Query Frame = 3
Query: 354 FVVSGRVGLCVLLYRLSFPTRLNGMRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLAQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
FVVSGR LCVLLYR++FP RL M LVFGMSESRICE F MLHFLD+K GFLL L V+ ++ RL EFAEAVYN+G PL CWGFIDGTVRGIARP R+QRLFYN HK KHA KFQGV+ PDG+F D+WGPVVGTRHDNY+LAQSGLM+KLA LNSPSG PY LYGDPAYG+SNHLICPFSA SVG L+P + FNKR+S CRVTVEWGFKE+ ++FVN+K QQK L+SPVA QYRVATLLSN HSCLNGG+EISQYFGV PP+ EEYL V
Sbjct: 424 FVVSGREALCVLLYRMAFPCRLKDMPLVFGMSESRICEAFKWMLHFLDFKWGFLLSLSVESVQLRLLEFAEAVYNAGCPLPRCWGFIDGTVRGIARPKRWQRLFYNDHKGKHAFKFQGVVTPDGLFADLWGPVVGTRHDNYILAQSGLMQKLAMLNSPSGQPYYLYGDPAYGLSNHLICPFSASSVGP-LTPEVADFNKRISACRVTVEWGFKEICNYWAFVNMKQQQKSLLSPVAVQYRVATLLSNWHSCLNGGNEISQYFGVGPPSFEEYLGV 697
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5JS57_9PHAE (DDE Tnp4 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS57_9PHAE) HSP 1 Score: 412 bits (1059), Expect = 8.810e-137 Identity = 196/276 (71.01%), Postives = 231/276 (83.70%), Query Frame = 3
Query: 354 FVVSGRVGLCVLLYRLSFPTRLNGMRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKL-AQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
FVV GR LCVLLYRL+FP L MRL FG+SES ICETFN MLHF+D+K GFLL L+V R+ P+L FAEAVYN G PLT+CW FIDGTVRGIARP+R +R FYNG+KRKHA+KFQGV+ PDG+FVD++ VGT HD Y+LA+S L+EKL +NSPSGHPYC+YGDPAYG ++H+ CPFSA SV G L+PAM FNK MS CRVTVEWGFKE+T K++FV++K QQKFL+SPVA QY+VATLLSN HSCLNGG++ISQYFGV PPTLEEYL+V
Sbjct: 146 FVVGGREALCVLLYRLAFPCCLKDMRLDFGLSESCICETFNWMLHFMDFKWGFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIARPIRNKRFFYNGYKRKHAIKFQGVVTPDGLFVDLYDAEVGTTHDGYLLAESTLLEKLQTHMNSPSGHPYCVYGDPAYGQTDHIQCPFSA-SVNGPLTPAMRKFNKSMSQCRVTVEWGFKEMTSKWAFVDMKCQQKFLLSPVATQYKVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYLKV 420
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5KH29_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH29_9PHAE) HSP 1 Score: 409 bits (1050), Expect = 1.340e-135 Identity = 197/277 (71.12%), Postives = 234/277 (84.48%), Query Frame = 3
Query: 354 FVVSGRVGLCVLLYRLSFPTRLNGMRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLY-EFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLA-QLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
F+VSGR LCVLLYRL+FP RL MRLVFG+SES ICETFNRMLHFLD+K G+LL ++V+R+KPRL EFAEA+YN+G PLT+CWGFID T+RGIAR RL HA+KFQGV+ PDG+FVD+WG V+GTRHD+Y+LAQSGLM+KLA NSPSG PYCLYGDPAYG+S+HL+CPFSA S G L+P M FN+RMSHCRVTVEWGFKE+T K++FV++K QQK+L+SPV KQYRVATLLSNMHSCLNGG++ISQYF + PPTLEEYL+V
Sbjct: 137 FIVSGREALCVLLYRLAFPCRLKDMRLVFGLSESCICETFNRMLHFLDFKWGWLLSVDVERLKPRLLVEFAEAIYNAGCPLTHCWGFIDETIRGIARV----RLADTHQLSIHAIKFQGVVTPDGLFVDLWGLVLGTRHDSYLLAQSGLMQKLAAHFNSPSGRPYCLYGDPAYGLSDHLVCPFSAASYGP-LTPEMADFNQRMSHCRVTVEWGFKEMTSKWAFVDMKSQQKYLLSPVGKQYRVATLLSNMHSCLNGGNQISQYFNLQPPTLEEYLKV 408
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5L370_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L370_9PHAE) HSP 1 Score: 400 bits (1028), Expect = 1.100e-133 Identity = 194/275 (70.55%), Postives = 225/275 (81.82%), Query Frame = 3
Query: 357 VVSGRVGLCVLLYRLSFPTRLNGMRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKL-AQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
VV GR LCVLLYRL+FP RL MRLVFG+SES ICETFN MLH +D K FLL L+V R+ P+L FAEAVYN G PLT+CW FIDGTVRGIARP+R QR FY+G+KRKHA+KFQGV+ PDG+ D++ VGTRHD Y+LAQS L+EKL +NSPSGHPYCL+GDPAYG ++H+ CPFSA SV G+LS AM FNK MS RVTVEWGFKE+T K++FV +K QQKFL+SPVA QY VATLLSN HSCLNGG++ISQYFGV PPTLEEYL+V
Sbjct: 41 VVGGREALCVLLYRLAFPCRLKDMRLVFGLSESCICETFNWMLHIMDVKLRFLLSLDVQRLVPKLRTFAEAVYNKGCPLTHCWAFIDGTVRGIARPIRNQRFFYSGYKRKHAIKFQGVVTPDGLIDDLYAAEVGTRHDGYLLAQSALLEKLQTHMNSPSGHPYCLHGDPAYGQTDHVQCPFSA-SVNGLLSSAMRNFNKSMSQRRVTVEWGFKEMTSKWAFVGMKCQQKFLLSPVATQYNVATLLSNFHSCLNGGNQISQYFGVEPPTLEEYLKV 314
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5JJ08_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ08_9PHAE) HSP 1 Score: 401 bits (1030), Expect = 3.580e-133 Identity = 186/248 (75.00%), Postives = 216/248 (87.10%), Query Frame = 3
Query: 435 VFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLAQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
VFG+SES ICE FN MLHFLD++ G+LL L+V R++ L EFAEA++NS LT+CWGFIDGTVRGIARP +QR+FYNGHKRKHAMKFQGVI PDG+FVD+WGPV GTRHD+++LAQSGLMEKL+ LNSP+GHPYCLYGDPAYG+SN+L+CPFSA SVG +P M FNKRMSHCRVTVEWGFKE+TGK+ VN+KPQQKF +SP+AKQYRVATLLSN HSC+NGG+EISQYFGV P T EEYL V
Sbjct: 122 VFGLSESCICEAFNWMLHFLDFRWGYLLSLDVARLQLHLIEFAEAIFNSCCRLTHCWGFIDGTVRGIARPKYWQRMFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHDSFILAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLSNYLVCPFSASSVGP-RTPEMADFNKRMSHCRVTVEWGFKEMTGKWVLVNMKPQQKFSLSPIAKQYRVATLLSNWHSCMNGGNEISQYFGVVPLTFEEYLAV 368
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5KY46_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY46_9PHAE) HSP 1 Score: 362 bits (929), Expect = 5.110e-120 Identity = 166/212 (78.30%), Postives = 188/212 (88.68%), Query Frame = 3
Query: 543 PRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLAQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
P L EFAEA++NSG PLT+CWGFIDGTVRGIARP +QRLFYNGHKRKHAMKFQGVI PDG+FVD+WGPV GTRH +++LAQ GLMEKL+ NSP GHPY LYGDPAYG+SNHL+CPFSA S G L+P M FNKRMSHCRVTVEWGFKE+TGK++FV++KPQQKFL+SPVAKQYRVATLLSN HSC+NGG+EISQYFGV PPT EEY+ V
Sbjct: 20 PHLIEFAEAIFNSGCPLTHCWGFIDGTVRGIARPKYWQRLFYNGHKRKHAMKFQGVITPDGLFVDLWGPVAGTRHHSFILAQFGLMEKLSMQNSPIGHPYYLYGDPAYGLSNHLVCPFSASSAGP-LTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 230
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5JR24_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR24_9PHAE) HSP 1 Score: 354 bits (908), Expect = 3.640e-116 Identity = 173/246 (70.33%), Postives = 198/246 (80.49%), Query Frame = 3
Query: 447 SESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGIARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLAQ--LNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLEEYLRV 1178
SES ICE FN MLHFLD++ G+LL L+V R++P L EFAEAV NSG PLT+CWGFIDGTVRGIA+P +QRLFYNGHKRKHAMKFQG+ Y +AQSGLMEKL+ NSP+GHPYCLYGDPAYG+SNHL+CPFSA SVG L+P M FNKRMSHCRVTVEWGFKE+TGK++FV++KPQQKFL+SPVAKQYRVATLLSN HSC+NGG+EISQYFGV PPT EEY+ V
Sbjct: 52 SESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEAVVNSGCPLTHCWGFIDGTVRGIAKPKYWQRLFYNGHKRKHAMKFQGL---------------------YSIAQSGLMEKLSMPNSNSPTGHPYCLYGDPAYGLSNHLVCPFSASSVGP-LTPEMADFNKRMSHCRVTVEWGFKEMTGKWAFVSMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEISQYFGVVPPTFEEYVAV 275
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Match: A0A6H5K0J0_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J0_9PHAE) HSP 1 Score: 353 bits (906), Expect = 3.760e-116 Identity = 172/248 (69.35%), Postives = 199/248 (80.24%), Query Frame = 3
Query: 426 MRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYNSGSPLTYCWGFIDGTVRGI--ARPVRFQRLFYNGHKRKHAMKFQGVIAPDGIFVDVWGPVVGTRHDNYVLAQSGLMEKLAQLNSPSGHPYCLYGDPAYGISNHLICPFSAVSVGGVLSPAMIAFNKRMSHCRVTVEWGFKEVTGKFSFVNLKPQQKFLMSPVAKQYRVATLLSNMHSCLNGGHEISQYFGVSPPTLE 1163
MRLVFGMSES ICE FN MLHFLD++ G+LL L+V R++P L EFAE + TV + A P +QRLFYNGHKRKHAMKFQG+I PDG+FVD+WGPV GTRHD+++LAQSGLMEKL+ LNSP+GHPYCLYGDPAYG+ NHL+CPFSA SVG +P M FNKR SHCRVTVEWGFKE+TGK++FVN+KPQQKFL+SPVAKQYRVATLLSN HSC+NGG+EI QYFGV P T E
Sbjct: 25 MRLVFGMSESCICEAFNWMLHFLDFRWGYLLSLDVARLQPHLIEFAEXL----------------TVGDLSMAPPKYWQRLFYNGHKRKHAMKFQGIITPDGLFVDLWGPVAGTRHDSFMLAQSGLMEKLSMLNSPTGHPYCLYGDPAYGLRNHLVCPFSASSVGP-FTPEMADFNKRTSHCRVTVEWGFKEMTGKWAFVNMKPQQKFLLSPVAKQYRVATLLSNWHSCMNGGNEIWQYFGVVPSTFE 255 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.673.1 >prot_C-linearis_contig10.673.1 ID=prot_C-linearis_contig10.673.1|Name=mRNA_C-linearis_contig10.673.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=252bp MRLVFGMSESRICETFNRMLHFLDYKRGFLLELEVDRIKPRLYEFAEAVYback to top mRNA from alignment at C-linearis_contig10:3596729..3598844+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.673.1 ID=mRNA_C-linearis_contig10.673.1|Name=mRNA_C-linearis_contig10.673.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2116bp|location=Sequence derived from alignment at C-linearis_contig10:3596729..3598844+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:3596729..3598844+ >mRNA_C-linearis_contig10.673.1 ID=mRNA_C-linearis_contig10.673.1|Name=mRNA_C-linearis_contig10.673.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at C-linearis_contig10:3596729..3598844+ (Chordaria linearis ClinC8C monoicous)back to top |