mRNA_C-linearis_contig10.669.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI) HSP 1 Score: 353 bits (905), Expect = 8.390e-120 Identity = 173/273 (63.37%), Postives = 216/273 (79.12%), Query Frame = 1
Query: 31 IKKEREAKIRAVERLKAARREFVRISDKQGEALHTLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFFNPVYEERGDEDMSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQ 849
+K ++E KIR +R+ AAR+E RI+D+QG ALH LL DPE++ IF+KK P + QRA++EDQ RWN +G+RFHP TLRIA+Y+ GVAGSA YN+L +HLP+ RR+QQ++A+ A PRTGVLV+NI+KYG LAA QDA ADLTGVL+WDL HL+KNG FAP G ++GLVDE TFFNPVY+ + DED L L +++A+QYVE FFVS+G PEYKFVVWREAV+ LSTDYIQRM+ R MRFL+ AH+DK FDV+ATVCDGASEQ
Sbjct: 3 VKSQKEGKIRLQDRVLAARKESERINDQQGAALHELLLDPESRTIFEKKLPEDSAQRAIFEDQLRWNTRMASSKGFRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQQLQAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGLDFAPKEGRLTGLVDEATFFNPVYQGKVDEDGGLGKQLGKILATQYVE-FFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLSIAHRDKGFDVVATVCDGASEQ 274
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE) HSP 1 Score: 359 bits (921), Expect = 6.480e-114 Identity = 169/282 (59.93%), Postives = 215/282 (76.24%), Query Frame = 1
Query: 1 DRTIYINGQNIKKEREAKIRAVERLKAARREFVRISDKQGEALHTLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFFNPVYEERGDEDMSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASE 846
D ++ ++ +ER A +R ER+ + R+E VR+ +QGEALH L D ET+ + + P G+ QR YEDQ +WN ++GK +G+RFHP T+R+A+Y+QG+AG+A YN+L +LHLP+ RI+Q+R A PRT VL ENI KYG LAA QDA DL GVL WDLMHLNKNGF+FAPN GG +GLVDET FFNP+Y+ G +E TLE++VA+QYVEMFFVS+GKPEYKFVVWREAV+ LSTDYIQRM++RVMR+LA AH DKAFDV+AT+CDGA E
Sbjct: 466 DHKLWSTAASLNRERNATVRLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTCVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETAFFNPIYKHEGGVVKEVEPTLEKIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRVMRYLAMAHPDKAFDVVATICDGAPE 747
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI) HSP 1 Score: 354 bits (908), Expect = 2.220e-111 Identity = 168/279 (60.22%), Postives = 211/279 (75.63%), Query Frame = 1
Query: 10 IYINGQNIKKEREAKIRAVERLKAARREFVRISDKQGEALHTLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFFNPVYEERGDEDMSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASE 846
++ ++ +ER R ER+ + R+E VR+ +QGEALH L D ET+ + + P G+ QR YEDQ +WN ++GK +G+RFHP T+R+A+Y+QG+AG+A YN+L +LHLP+ RI+Q+R A PRTGVL ENI KYG LAA QDA DL GVL WDLMHLNKNGF+FAPN GG +GLVDETTFFNP+Y+ G +E LE++VA+QYVEMFFVS+GKPEYKFVVWREAV+ LSTDYIQRM++R MR+LA AH DKAFDVIAT CDGA E
Sbjct: 378 LWSTAADLNRERTTTARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGVVKEVEPILEKIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRAMRYLAMAHPDKAFDVIATECDGAPE 656
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE) HSP 1 Score: 306 bits (784), Expect = 1.470e-95 Identity = 144/213 (67.61%), Postives = 175/213 (82.16%), Query Frame = 1
Query: 211 EDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFFNPVYEERGDEDMSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQ 849
+DQ +WN ++GK +G+RFHP T+R+A+Y+QG+AG+A YN+L+ +LHLP+ RI+Q+R A PRTGVL ENI K G LAA QD ADL GVLAWDLMHLNKNGF+FAPN GG +GLVDETTFFNP+Y+ G +E LE++VA+QYVEM+FVSVGKPEYKFVVWREAV+ LSTD+IQRM++RVMR LA AH DKAFDVIATVCDGA Q
Sbjct: 303 QDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLTNVLHLPSPERIKQLRRNAAPPRTGVLTENILKNGKLAATQDTDKADLMGVLAWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGIVKEVEPILEKIVATQYVEMYFVSVGKPEYKFVVWREAVRSLSTDFIQRMLIRVMRSLAMAHPDKAFDVIATVCDGAPGQ 515
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI) HSP 1 Score: 243 bits (620), Expect = 3.290e-73 Identity = 114/215 (53.02%), Postives = 152/215 (70.70%), Query Frame = 1
Query: 1 DRTIYINGQNIKKEREAKIRAVERLKAARREFVRISDKQGEALHTLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFFNPVYEERGDEDMSLENTLERV 645
D ++ ++ +ER A R ER+ + R+E VR+ +QGEALH L D ET+ + + P G+ QR YEDQ +WN ++GK +G+RFHP T+R+A+Y+QG+AG+A YN+L +LHLP+ RI+Q+R A PRTGVL ENI KYG LAA QDA DL GVL WDLMHLNK+GF+F PN GG +GLVDETTFFNP+Y+ G +E TLE++
Sbjct: 333 DHKLWSTAADLNRERNATARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLMNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKSGFSFTPNGGGFTGLVDETTFFNPIYKHEGGVVREVEPTLEKL 547
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE) HSP 1 Score: 184 bits (467), Expect = 2.960e-54 Identity = 100/210 (47.62%), Postives = 136/210 (64.76%), Query Frame = 1
Query: 226 WNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRT-GVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFF-NPVYEERGDED-MSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASE 846
+N+ G +G+RF P LR A+Y GSA YN++ +LHLP+ ++++R AG T GV ++ YG +AA + DL G+L WDLMHLN NGF PN GGI GLVD + +P+ +G D +SLE TLE VA+QY+E+F+VS+G +YKF V+REAVKGL+ ++RM+ VM L H+DK FDVI TVCDGA+E
Sbjct: 4 YNKFQGSSKGWRFSPKVLRWALYALANMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVADNISLEETLETFVATQYLEVFWVSIGNLKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTVHEDKQFDVICTVCDGAAE 213
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE) HSP 1 Score: 196 bits (498), Expect = 1.800e-53 Identity = 111/269 (41.26%), Postives = 158/269 (58.74%), Query Frame = 1
Query: 109 DKQGEALH-TLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAA--------------------DLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFF-NPVYEERG-DEDMSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASE 846
++QG LH TL +P+ + +F + P G+ RA+ E+ R+N+ G +G+RF+ LR A Y G A Y +L +LHLP + +Q+I A + + G I+ + +A + S + DL G+L WDLMHLN+N F PN GGI GLVD +FF +P+ +G DE ++LE TLE VA+QY+E+F+VS+G P+YKF V+REAV+GLS I RM+ + L AH+DK FDVI TVCDGA+E
Sbjct: 237 NEQGRRLHETLSGNPDVKDVF-ARLPEGSLARAVVEEMMRYNQHRGSAKGWRFNAKVLRWACYALAKMGGAGYQVLRDVLHLPHIKHVQKIVAASTSTKMGEQYHLIEAFAKMACEDNXSTSRYVELFWFYSLLWRPYGLVFDLLGILVWDLMHLNQNDFRVCPNGGGIEGLVDRDSFFRHPLDAVQGVDEHITLEKTLETFVATQYLEVFWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEITNKLYEAHEDKKFDVIGTVCDGAAE 504
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE) HSP 1 Score: 189 bits (479), Expect = 1.200e-51 Identity = 104/249 (41.77%), Postives = 150/249 (60.24%), Query Frame = 1
Query: 109 DKQGEALHTLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRT-GVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVD-ETTFFNPVYEERG-DEDMSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASE 846
D QG LH L + + +F P +++RAL + NE G +G+R+ P +R Y G A Y ++ +LHLP+ + + R G T G+ + I+ +G +AA ++ DL G+L WD MHLN NGFT PN GGISGLV ++ ++P+ +G D+ +SLE+TLE +A+QY+E+++VS+G P+YKF V+REAV+GLS I RM+ +M L AH DK DVI TVCDGA E
Sbjct: 42 DDQGRRLHEALKTEDVEELF-ADIPEDSYERALVDHMMDRNEREGPKKGWRYSPKVVRWYCYALAKMGKAGYALIRDILHLPSISTVNRARRAGRGTATWGLQHDLIEAHGKMAAEENLGRFDLAGILCWDCMHLNTNGFTVRPNGGGISGLVSGDSVLYHPLEAVQGVDKTISLEDTLETFMATQYLEVWWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEIMLRLYEAHPDKKIDVIGTVCDGAGE 289
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: D7FVM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM8_ECTSI) HSP 1 Score: 169 bits (428), Expect = 3.100e-47 Identity = 79/128 (61.72%), Postives = 101/128 (78.91%), Query Frame = 1
Query: 292 YLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFFNPVYEERGDEDMSLENTLERVVASQYVEMFF 675
Y+ GVAGSA YN+L +HLP+ RR+Q++ A+ A PRTGVLV+NI+KYG LAA QDA ADLTGVL+WDL HL+KNGF FAP GG +GLVDE TFFNPVY+ + DED L+ L++++A++YVE F
Sbjct: 149 YMHGVAGSAGYNMLRNFIHLPSPRRVQRLEAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGFDFAPKEGGFTGLVDEATFFNPVYQRKVDEDGDLDKQLDKILATKYVERTF 276
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE) HSP 1 Score: 100 bits (250), Expect = 3.170e-20 Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 109 DKQGEALHTLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAA 450
D QG+A+H L T+ + DKK P + +R L D + N G RGYRFH TLR +Y GVAG+A YN L +LHLP I+ +R K P +GVLV+NI+ + I A
Sbjct: 200 DDQGDAIHKFLIADSTRTLLDKKLPAESDERTLLNDLIQGNLAKGNGRGYRFHESTLRFCIYYSGVAGTAAYNALREVLHLPFPSHIRHLREKAVPPGSGVLVDNIQMFFISLA 313 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig10.669.1 >prot_C-linearis_contig10.669.1 ID=prot_C-linearis_contig10.669.1|Name=mRNA_C-linearis_contig10.669.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp DRTIYINGQNIKKEREAKIRAVERLKAARREFVRISDKQGEALHTLLSDPback to top mRNA from alignment at C-linearis_contig10:3549742..3551427+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig10.669.1 ID=mRNA_C-linearis_contig10.669.1|Name=mRNA_C-linearis_contig10.669.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1686bp|location=Sequence derived from alignment at C-linearis_contig10:3549742..3551427+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig10:3549742..3551427+ >mRNA_C-linearis_contig10.669.1 ID=mRNA_C-linearis_contig10.669.1|Name=mRNA_C-linearis_contig10.669.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at C-linearis_contig10:3549742..3551427+ (Chordaria linearis ClinC8C monoicous)back to top |