mRNA_C-linearis_contig10.669.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig10.669.1
Unique NamemRNA_C-linearis_contig10.669.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: D7G5R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R1_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 8.390e-120
Identity = 173/273 (63.37%), Postives = 216/273 (79.12%), Query Frame = 1
Query:   31 IKKEREAKIRAVERLKAARREFVRISDKQGEALHTLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFFNPVYEERGDEDMSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQ 849
            +K ++E KIR  +R+ AAR+E  RI+D+QG ALH LL DPE++ IF+KK P  + QRA++EDQ RWN      +G+RFHP TLRIA+Y+ GVAGSA YN+L   +HLP+ RR+QQ++A+ A PRTGVLV+NI+KYG LAA QDA  ADLTGVL+WDL HL+KNG  FAP  G ++GLVDE TFFNPVY+ + DED  L   L +++A+QYVE FFVS+G PEYKFVVWREAV+ LSTDYIQRM+ R MRFL+ AH+DK FDV+ATVCDGASEQ
Sbjct:    3 VKSQKEGKIRLQDRVLAARKESERINDQQGAALHELLLDPESRTIFEKKLPEDSAQRAIFEDQLRWNTRMASSKGFRFHPATLRIAIYMHGVAGSAGYNMLRNFIHLPSPRRVQQLQAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGLDFAPKEGRLTGLVDEATFFNPVYQGKVDEDGGLGKQLGKILATQYVE-FFVSLGNPEYKFVVWREAVRSLSTDYIQRMLTRTMRFLSIAHRDKGFDVVATVCDGASEQ 274          
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: A0A6H5KVF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF4_9PHAE)

HSP 1 Score: 359 bits (921), Expect = 6.480e-114
Identity = 169/282 (59.93%), Postives = 215/282 (76.24%), Query Frame = 1
Query:    1 DRTIYINGQNIKKEREAKIRAVERLKAARREFVRISDKQGEALHTLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFFNPVYEERGDEDMSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASE 846
            D  ++    ++ +ER A +R  ER+ + R+E VR+  +QGEALH  L D ET+ +   + P G+ QR  YEDQ +WN ++GK +G+RFHP T+R+A+Y+QG+AG+A YN+L  +LHLP+  RI+Q+R   A PRT VL ENI KYG LAA QDA   DL GVL WDLMHLNKNGF+FAPN GG +GLVDET FFNP+Y+  G     +E TLE++VA+QYVEMFFVS+GKPEYKFVVWREAV+ LSTDYIQRM++RVMR+LA AH DKAFDV+AT+CDGA E
Sbjct:  466 DHKLWSTAASLNRERNATVRLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTCVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETAFFNPIYKHEGGVVKEVEPTLEKIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRVMRYLAMAHPDKAFDVVATICDGAPE 747          
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: D7FZI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZI2_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 2.220e-111
Identity = 168/279 (60.22%), Postives = 211/279 (75.63%), Query Frame = 1
Query:   10 IYINGQNIKKEREAKIRAVERLKAARREFVRISDKQGEALHTLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFFNPVYEERGDEDMSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASE 846
            ++    ++ +ER    R  ER+ + R+E VR+  +QGEALH  L D ET+ +   + P G+ QR  YEDQ +WN ++GK +G+RFHP T+R+A+Y+QG+AG+A YN+L  +LHLP+  RI+Q+R   A PRTGVL ENI KYG LAA QDA   DL GVL WDLMHLNKNGF+FAPN GG +GLVDETTFFNP+Y+  G     +E  LE++VA+QYVEMFFVS+GKPEYKFVVWREAV+ LSTDYIQRM++R MR+LA AH DKAFDVIAT CDGA E
Sbjct:  378 LWSTAADLNRERTTTARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLRNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGVVKEVEPILEKIVATQYVEMFFVSIGKPEYKFVVWREAVRSLSTDYIQRMLIRAMRYLAMAHPDKAFDVIATECDGAPE 656          
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: A0A6H5L5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M0_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 1.470e-95
Identity = 144/213 (67.61%), Postives = 175/213 (82.16%), Query Frame = 1
Query:  211 EDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFFNPVYEERGDEDMSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQ 849
            +DQ +WN ++GK +G+RFHP T+R+A+Y+QG+AG+A YN+L+ +LHLP+  RI+Q+R   A PRTGVL ENI K G LAA QD   ADL GVLAWDLMHLNKNGF+FAPN GG +GLVDETTFFNP+Y+  G     +E  LE++VA+QYVEM+FVSVGKPEYKFVVWREAV+ LSTD+IQRM++RVMR LA AH DKAFDVIATVCDGA  Q
Sbjct:  303 QDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLTNVLHLPSPERIKQLRRNAAPPRTGVLTENILKNGKLAATQDTDKADLMGVLAWDLMHLNKNGFSFAPNGGGFTGLVDETTFFNPIYKHEGGIVKEVEPILEKIVATQYVEMYFVSVGKPEYKFVVWREAVRSLSTDFIQRMLIRVMRSLAMAHPDKAFDVIATVCDGAPGQ 515          
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: D7G2I2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2I2_ECTSI)

HSP 1 Score: 243 bits (620), Expect = 3.290e-73
Identity = 114/215 (53.02%), Postives = 152/215 (70.70%), Query Frame = 1
Query:    1 DRTIYINGQNIKKEREAKIRAVERLKAARREFVRISDKQGEALHTLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFFNPVYEERGDEDMSLENTLERV 645
            D  ++    ++ +ER A  R  ER+ + R+E VR+  +QGEALH  L D ET+ +   + P G+ QR  YEDQ +WN ++GK +G+RFHP T+R+A+Y+QG+AG+A YN+L  +LHLP+  RI+Q+R   A PRTGVL ENI KYG LAA QDA   DL GVL WDLMHLNK+GF+F PN GG +GLVDETTFFNP+Y+  G     +E TLE++
Sbjct:  333 DHKLWSTAADLNRERNATARLRERIVSMRKECVRVPVEQGEALHKFLVDAETKEVIHSRLPQGSDQRYFYEDQVKWNTSHGKAKGFRFHPATMRLAIYIQGIAGTAAYNMLMNVLHLPSPERIKQLRRNAAPPRTGVLTENILKYGKLAATQDADKVDLMGVLTWDLMHLNKSGFSFTPNGGGFTGLVDETTFFNPIYKHEGGVVREVEPTLEKL 547          
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: A0A6H5KQL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQL9_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 2.960e-54
Identity = 100/210 (47.62%), Postives = 136/210 (64.76%), Query Frame = 1
Query:  226 WNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRT-GVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFF-NPVYEERGDED-MSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASE 846
            +N+  G  +G+RF P  LR A+Y     GSA YN++  +LHLP+   ++++R   AG  T GV    ++ YG +AA  +    DL G+L WDLMHLN NGF   PN GGI GLVD  +   +P+   +G  D +SLE TLE  VA+QY+E+F+VS+G  +YKF V+REAVKGL+   ++RM+  VM  L   H+DK FDVI TVCDGA+E
Sbjct:    4 YNKFQGSSKGWRFSPKVLRWALYALANMGSAGYNVIQDVLHLPSIGHLRKVRRAAAGTTTWGVQHHLVEAYGKMAAEDNLGRFDLCGILVWDLMHLNTNGFKVRPNGGGIQGLVDPDSILRHPLDGVKGVADNISLEETLETFVATQYLEVFWVSIGNLKYKFCVYREAVKGLTGPKLKRMLNEVMLRLYTVHEDKQFDVICTVCDGAAE 213          
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: A0A6H5KFP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFP1_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 1.800e-53
Identity = 111/269 (41.26%), Postives = 158/269 (58.74%), Query Frame = 1
Query:  109 DKQGEALH-TLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAA--------------------DLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFF-NPVYEERG-DEDMSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASE 846
            ++QG  LH TL  +P+ + +F  + P G+  RA+ E+  R+N+  G  +G+RF+   LR A Y     G A Y +L  +LHLP  + +Q+I A +   + G     I+ +  +A   + S +                    DL G+L WDLMHLN+N F   PN GGI GLVD  +FF +P+   +G DE ++LE TLE  VA+QY+E+F+VS+G P+YKF V+REAV+GLS   I RM+  +   L  AH+DK FDVI TVCDGA+E
Sbjct:  237 NEQGRRLHETLSGNPDVKDVF-ARLPEGSLARAVVEEMMRYNQHRGSAKGWRFNAKVLRWACYALAKMGGAGYQVLRDVLHLPHIKHVQKIVAASTSTKMGEQYHLIEAFAKMACEDNXSTSRYVELFWFYSLLWRPYGLVFDLLGILVWDLMHLNQNDFRVCPNGGGIEGLVDRDSFFRHPLDAVQGVDEHITLEKTLETFVATQYLEVFWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEITNKLYEAHEDKKFDVIGTVCDGAAE 504          
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 1.200e-51
Identity = 104/249 (41.77%), Postives = 150/249 (60.24%), Query Frame = 1
Query:  109 DKQGEALHTLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRT-GVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVD-ETTFFNPVYEERG-DEDMSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYIQRMVVRVMRFLAAAHQDKAFDVIATVCDGASE 846
            D QG  LH  L   + + +F    P  +++RAL +     NE  G  +G+R+ P  +R   Y     G A Y ++  +LHLP+   + + R    G  T G+  + I+ +G +AA ++    DL G+L WD MHLN NGFT  PN GGISGLV  ++  ++P+   +G D+ +SLE+TLE  +A+QY+E+++VS+G P+YKF V+REAV+GLS   I RM+  +M  L  AH DK  DVI TVCDGA E
Sbjct:   42 DDQGRRLHEALKTEDVEELF-ADIPEDSYERALVDHMMDRNEREGPKKGWRYSPKVVRWYCYALAKMGKAGYALIRDILHLPSISTVNRARRAGRGTATWGLQHDLIEAHGKMAAEENLGRFDLAGILCWDCMHLNTNGFTVRPNGGGISGLVSGDSVLYHPLEAVQGVDKTISLEDTLETFMATQYLEVWWVSIGNPKYKFCVYREAVRGLSGPKISRMLDEIMLRLYEAHPDKKIDVIGTVCDGAGE 289          
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: D7FVM8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM8_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 3.100e-47
Identity = 79/128 (61.72%), Postives = 101/128 (78.91%), Query Frame = 1
Query:  292 YLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAAMQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFFNPVYEERGDEDMSLENTLERVVASQYVEMFF 675
            Y+ GVAGSA YN+L   +HLP+ RR+Q++ A+ A PRTGVLV+NI+KYG LAA QDA  ADLTGVL+WDL HL+KNGF FAP  GG +GLVDE TFFNPVY+ + DED  L+  L++++A++YVE  F
Sbjct:  149 YMHGVAGSAGYNMLRNFIHLPSPRRVQRLEAQAAPPRTGVLVDNIRKYGRLAAEQDADKADLTGVLSWDLTHLSKNGFDFAPKEGGFTGLVDEATFFNPVYQRKVDEDGDLDKQLDKILATKYVERTF 276          
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.170e-20
Identity = 50/114 (43.86%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  109 DKQGEALHTLLSDPETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQGVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAA 450
            D QG+A+H  L    T+ + DKK P  + +R L  D  + N   G  RGYRFH  TLR  +Y  GVAG+A YN L  +LHLP    I+ +R K   P +GVLV+NI+ + I  A
Sbjct:  200 DDQGDAIHKFLIADSTRTLLDKKLPAESDERTLLNDLIQGNLAKGNGRGYRFHESTLRFCIYYSGVAGTAAYNALREVLHLPFPSHIRHLREKAVPPGSGVLVDNIQMFFISLA 313          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig10.669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7G5R1_ECTSI8.390e-12063.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KVF4_9PHAE6.480e-11459.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZI2_ECTSI2.220e-11160.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5M0_9PHAE1.470e-9567.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2I2_ECTSI3.290e-7353.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQL9_9PHAE2.960e-5447.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFP1_9PHAE1.800e-5341.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE1.200e-5141.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVM8_ECTSI3.100e-4761.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRH8_9PHAE3.170e-2043.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig10contigC-linearis_contig10:3549742..3551427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size849
Cds size849
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig10.669.1prot_C-linearis_contig10.669.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig10 3549742..3551427 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927352.1327415-CDS-C-linearis_contig10:3549741..35499541622927352.1327415-CDS-C-linearis_contig10:3549741..3549954Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3549742..3549954 +
1690879646.3379714-CDS-C-linearis_contig10:3549741..35499541690879646.3379714-CDS-C-linearis_contig10:3549741..3549954Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3549742..3549954 +
1622927352.1433973-CDS-C-linearis_contig10:3550152..35503681622927352.1433973-CDS-C-linearis_contig10:3550152..3550368Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3550153..3550368 +
1690879646.354351-CDS-C-linearis_contig10:3550152..35503681690879646.354351-CDS-C-linearis_contig10:3550152..3550368Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3550153..3550368 +
1622927352.154017-CDS-C-linearis_contig10:3550830..35510671622927352.154017-CDS-C-linearis_contig10:3550830..3551067Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3550831..3551067 +
1690879646.3622382-CDS-C-linearis_contig10:3550830..35510671690879646.3622382-CDS-C-linearis_contig10:3550830..3551067Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3550831..3551067 +
1622927352.1640217-CDS-C-linearis_contig10:3551244..35514271622927352.1640217-CDS-C-linearis_contig10:3551244..3551427Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3551245..3551427 +
1690879646.3709576-CDS-C-linearis_contig10:3551244..35514271690879646.3709576-CDS-C-linearis_contig10:3551244..3551427Chordaria linearis ClinC8C monoicousCDSC-linearis_contig10 3551245..3551427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig10.669.1

>prot_C-linearis_contig10.669.1 ID=prot_C-linearis_contig10.669.1|Name=mRNA_C-linearis_contig10.669.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=283bp
DRTIYINGQNIKKEREAKIRAVERLKAARREFVRISDKQGEALHTLLSDP
ETQAIFDKKCPPGTHQRALYEDQKRWNETNGKVRGYRFHPGTLRIAVYLQ
GVAGSAVYNILSTMLHLPTTRRIQQIRAKTAGPRTGVLVENIKKYGILAA
MQDASAADLTGVLAWDLMHLNKNGFTFAPNAGGISGLVDETTFFNPVYEE
RGDEDMSLENTLERVVASQYVEMFFVSVGKPEYKFVVWREAVKGLSTDYI
QRMVVRVMRFLAAAHQDKAFDVIATVCDGASEQ
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mRNA from alignment at C-linearis_contig10:3549742..3551427+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig10.669.1 ID=mRNA_C-linearis_contig10.669.1|Name=mRNA_C-linearis_contig10.669.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1686bp|location=Sequence derived from alignment at C-linearis_contig10:3549742..3551427+ (Chordaria linearis ClinC8C monoicous)
GATCGCACCATCTACATCAACGGCCAAAATATCAAGAAGGAGCGAGAAGC GAAGATCCGCGCGGTGGAGCGACTTAAAGCTGCGAGGAGGGAGTTCGTGC GGATCAGCGACAAGCAGGGGGAAGCTCTCCACACCTTGCTCTCCGACCCC GAGACGCAGGCGATCTTCGACAAGAAGTGTCCGCCGGGGACCCACCAGCG AGCGTTGTATGAGGTATGTTTTTTTCCCAGCCGTCGCGCACTGAAAACTA GTTTTTTTAGTTGAGTTGTTTTACGTTTTCCATGGTATTGTTTAAGGCAG CGCATGAGCCGTGATTATAATTTGGCCGTGTTCGGCGTGCGCTATCGCGT CTAACTGGAAGCTTTTCTTCGTGTGGTCGACCCCACTGTCGTAACTCCCG ATATATGACAGGATCAGAAGAGGTGGAACGAAACCAACGGGAAAGTACGA GGGTATCGGTTCCACCCTGGTACACTACGAATCGCTGTCTATCTGCAAGG CGTGGCTGGTTCCGCGGTGTACAACATCCTGAGTACGATGCTGCACCTCC CAACCACGAGGCGCATCCAGCAGATCCGGGCCAAGACCGCGGGCCCGAGG ACGGGTGTCTTGGTGGAGAACATCAAGGTACGCTTCCCCATTTGTGTGTC TTCTCGCCTAGAGTGTGGAATGGCGTTTATTGTTATAAGGGCATGTATAC CCCCCCCTTTGTAAATATAGTGTGGAATGTCCTGTGATGTGCGCACTCGA GGTACACTTCTCCGCCGTTGTATTTTTTTTTTCCGCCTCGAATGGAACGG GCCTTCATGTACGTCTCTATGTTCCTCGCTCCCCTCCTTCTGTGTAATTC TTGTTGTTCTTTTGCCTGGAGTGTGCAATGTCCTGTGATGTACTCGTACT CGAGGTACACTTTTCCGCCGGTGTTGATTTTTTTTTTTTCGCCTCGAATG GAACAGAATTCCATGTATACTACCCCGCCCCCACGTTCTTCAGTGCATTA TTTTTGTTCTGTTTTGTCTAGAGTGTGGAATGTCCTGTGATGTGCTGGTA CTCCAGGTACGCTCTCCCAACCGTCGTTTGGTCCAACAGAAATATGGTAT TCTCGCGGCTATGCAAGATGCGTCCGCGGCGGATCTGACGGGTGTGTTGG CGTGGGACCTGATGCATCTGAACAAGAACGGGTTCACGTTTGCGCCGAAC GCGGGCGGCATTTCGGGGCTCGTGGACGAGACGACCTTTTTCAACCCCGT CTACGAGGAGCGCGGAGACGAAGATATGAGTCTTGAGAACACTCTCGAGC GGGTGGTCGCTTCCCAGTATGTCGAGGTAATTGTTGTATGTTCCCAGGCT CCCCGCATCACAGGCTTCTTTGCTGTCGACCGGGCTCTATATAGCGTTGG ACGTGACATCTTCTATATTTTGCCTCCAACAAGAGTATTATAACCGTCAA TCCTGATACACCGCCTTCCTGCATGCCCCCTACTTATCTTTCGTCGCCTG CAGATGTTCTTCGTCAGTGTCGGCAAGCCAGAGTACAAGTTTGTCGTCTG GCGCGAGGCTGTGAAGGGGCTCAGCACGGACTACATTCAGCGCATGGTGG TGAGGGTCATGCGTTTCCTCGCGGCCGCCCACCAGGACAAGGCGTTTGAC GTCATCGCCACCGTTTGCGACGGCGCATCTGAGCAA
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Coding sequence (CDS) from alignment at C-linearis_contig10:3549742..3551427+

>mRNA_C-linearis_contig10.669.1 ID=mRNA_C-linearis_contig10.669.1|Name=mRNA_C-linearis_contig10.669.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1698bp|location=Sequence derived from alignment at C-linearis_contig10:3549742..3551427+ (Chordaria linearis ClinC8C monoicous)
GATCGCACCATCTACATCAACGGCCAAAATATCAAGAAGGAGCGAGAAGC
GAAGATCCGCGCGGTGGAGCGACTTAAAGCTGCGAGGAGGGAGTTCGTGC
GGATCAGCGACAAGCAGGGGGAAGCTCTCCACACCTTGCTCTCCGACCCC
GAGACGCAGGCGATCTTCGACAAGAAGTGTCCGCCGGGGACCCACCAGCG
AGCGTTGTATGAGGATCGCACCATCTACATCAACGGCCAAAATATCAAGA
AGGAGCGAGAAGCGAAGATCCGCGCGGTGGAGCGACTTAAAGCTGCGAGG
AGGGAGTTCGTGCGGATCAGCGACAAGCAGGGGGAAGCTCTCCACACCTT
GCTCTCCGACCCCGAGACGCAGGCGATCTTCGACAAGAAGTGTCCGCCGG
GGACCCACCAGCGAGCGTTGTATGAGGATCAGAAGAGGTGGAACGAAACC
AACGGGAAAGTACGAGGGTATCGGTTCCACCCTGGTACACTACGAATCGC
TGTCTATCTGCAAGGCGTGGCTGGTTCCGCGGTGTACAACATCCTGAGTA
CGATGCTGCACCTCCCAACCACGAGGCGCATCCAGCAGATCCGGGCCAAG
ACCGCGGGCCCGAGGACGGGTGTCTTGGTGGAGAACATCAAGGATCAGAA
GAGGTGGAACGAAACCAACGGGAAAGTACGAGGGTATCGGTTCCACCCTG
GTACACTACGAATCGCTGTCTATCTGCAAGGCGTGGCTGGTTCCGCGGTG
TACAACATCCTGAGTACGATGCTGCACCTCCCAACCACGAGGCGCATCCA
GCAGATCCGGGCCAAGACCGCGGGCCCGAGGACGGGTGTCTTGGTGGAGA
ACATCAAGAAATATGGTATTCTCGCGGCTATGCAAGATGCGTCCGCGGCG
GATCTGACGGGTGTGTTGGCGTGGGACCTGATGCATCTGAACAAGAACGG
GTTCACGTTTGCGCCGAACGCGGGCGGCATTTCGGGGCTCGTGGACGAGA
CGACCTTTTTCAACCCCGTCTACGAGGAGCGCGGAGACGAAGATATGAGT
CTTGAGAACACTCTCGAGCGGGTGGTCGCTTCCCAGTATGTCGAGAAATA
TGGTATTCTCGCGGCTATGCAAGATGCGTCCGCGGCGGATCTGACGGGTG
TGTTGGCGTGGGACCTGATGCATCTGAACAAGAACGGGTTCACGTTTGCG
CCGAACGCGGGCGGCATTTCGGGGCTCGTGGACGAGACGACCTTTTTCAA
CCCCGTCTACGAGGAGCGCGGAGACGAAGATATGAGTCTTGAGAACACTC
TCGAGCGGGTGGTCGCTTCCCAGTATGTCGAGATGTTCTTCGTCAGTGTC
GGCAAGCCAGAGTACAAGTTTGTCGTCTGGCGCGAGGCTGTGAAGGGGCT
CAGCACGGACTACATTCAGCGCATGGTGGTGAGGGTCATGCGTTTCCTCG
CGGCCGCCCACCAGGACAAGGCGTTTGACGTCATCGCCACCGTTTGCGAC
GGCGCATCTGAGCAAATGTTCTTCGTCAGTGTCGGCAAGCCAGAGTACAA
GTTTGTCGTCTGGCGCGAGGCTGTGAAGGGGCTCAGCACGGACTACATTC
AGCGCATGGTGGTGAGGGTCATGCGTTTCCTCGCGGCCGCCCACCAGGAC
AAGGCGTTTGACGTCATCGCCACCGTTTGCGACGGCGCATCTGAGCAA
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